# STOCKHOLM 1.0
#=GF ID Atu_C3
#=GF AC RF02498
#=GF DE Rhizobiales sRNA Atu_C3
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 100.0
#=GF NC 41.9
#=GF TC 180.9
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.99 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 22336765
#=GF RT Deep sequencing uncovers numerous small RNAs on all four replicons of the
#=GF RT plant pathogen Agrobacterium tumefaciens.
#=GF RA Wilms I, Overloper A, Nowrousian M, Sharma CM, Narberhaus F
#=GF RL RNA Biol. 2012;9:446-457.
#=GF WK Bacterial_small_RNA
#=GF SQ 2

AE007869.2/317175-317330 UCCAACAAGGGGUGCGGAGCUCAGUCCACAGAUUAUCUCGAUGAUCAUAUCGACGAUAUUCACCUUCUUGCUAGCGGAUCUUUCGAGAUCCGUUUUUUCAGGUCAUGGAGCUUUUUGUGCCGUUUCGGUCUCGGAACGGGAAGGAGCUUUUUGUCC
CP002248.1/312893-313047 -UCAACAAGGGGUGCGGAUCUCAGUCCACAGAUUAUCUCGAUGAUCGUAUCGACGAUAUUCACCUUCUUGCUGGCGGGCCUUUCGAGGUCCGUUUUCUCAGGUCAUUGAGCUUUUUGUGCCGUUUCGGUCUCGGAACGGGCUGGAGCUUUUUGUCC
#=GC SS_cons             :::::(((((((<<-<<<______>>>->><<-<<<<<<<<<<____>>>>>>->>>>->>,))-)))))::<<<<<<<<<____>>>>>>>>>::::::<<-<<--<<<<<<<---<-<<<<<<<<____>>>>>>>>>-->>>>>>>-->>->>
#=GC RF                  uucAACaaGgGGuGcGGaucUcAGuCCACaGaUuauCuCGaugAUcacauCGacGauaUuCACCUcCuuGcUggCGGgcCuUUcGaGgcCCGccUUuUcAGGUCaUugaGCuccUUGcGCCGuucCGGUcUCGgaaCGGgaaggaGCucUUuGUCC
//
