# STOCKHOLM 1.0
#=GF ID Gl_U6
#=GF AC RF02494
#=GF DE Giardia U6 spliceosomal RNA
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 100.0
#=GF NC 79.3
#=GF TC 135.3
#=GF SE Eberhardt R
#=GF SS Predicted; PMID:23019220
#=GF TP Gene; snRNA; splicing;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.03 -Z 2958934 CM SEQDB
#=GF DR SO; 0000396; U6_snRNA;
#=GF DR GO; 0000395; mRNA 5'-splice site recognition;
#=GF DR GO; 0030627; pre-mRNA 5'-splice site binding;
#=GF DR GO; 0005685; U1 snRNP;
#=GF RN [1]
#=GF RM 23019220
#=GF RT Evolutionarily divergent spliceosomal snRNAs and a conserved non-coding
#=GF RT RNA processing motif in Giardia lamblia.
#=GF RA Hudson AJ, Moore AN, Elniski D, Joseph J, Yee J, Russell AG
#=GF RL Nucleic Acids Res. 2012;40:10995-11008.
#=GF WK U6_spliceosomal_RNA
#=GF SQ 2

AACB02000012.1/102610-102509 GUUAACAAAAACAGAGACAGUUAGCACCAGCUUCAGUCUAGAGUCGCUGGGGGACCUCUGGUUUCGCGGGAGCCCGUUGGCGCGUGCUUGCACCCCGCUCCU
ACGJ01001509.1/9098-9199     GUUAACAAAAACAGAGACAGUUAGCACCAGCUUCGGUCUAGAGUCGCUGGGGAACCUCUGGUUUCGCGGGAGCCUGUUGGCGCGUGCUUGCACCCCGCUCCU
#=GC SS_cons                 ::::::::::::::::::::::::::<<<<<<<<______>>>-->>>>>:::::::::::::::(((((,<<<____>>>,,<<<____>>>)))))::::
#=GC RF                      GUUAACAAAAACAGAGACAGUUAGCACCaGCuuCaGUCUAGagUCGCuGGGGaACCUCUGGUUUCGCGGGAGCCuGUUGGCGCGuGCUUGCaCCCCGCUCCU
//
