INFERNAL1/a [1.1.5 | Sep 2023] NAME GlsR6 ACC RF02475 DESC Small nucleolar RNA GlsR6 STATES 181 NODES 61 CLEN 59 W 139 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 17:53:11 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02475/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.961914 CKSUM 466948067 NULL 0.000 0.000 0.000 0.000 GA 75.00 TC 87.90 NC 35.40 EFP7GF -10.0110 0.71896 ECMLC 0.74133 -8.99505 -0.02555 1600000 926715 0.001295 ECMGC 0.43226 -17.80091 -4.34693 1600000 134208 0.002980 ECMLI 0.61502 -9.07931 0.94255 1600000 570178 0.002105 ECMGI 0.47221 -10.54876 0.72791 1600000 82155 0.004869 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 139 222 -7.319 -7.526 -0.041 -5.940 IL 1 1 2 1 4 1 18 141 224 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 141 223 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 17 139 222 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 4 2 3 5 3 0 12 136 218 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 19 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 16 138 220 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 7 5 3 8 3 0 12 135 217 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 18 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 16 136 219 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 10 8 3 11 3 0 11 133 216 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 17 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 15 135 218 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 13 11 3 14 3 0 10 132 214 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 17 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 14 134 216 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 16 14 3 17 3 0 10 131 213 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 16 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 14 132 215 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 19 17 3 20 3 0 9 129 211 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 15 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 13 131 213 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 22 20 3 23 3 0 8 128 210 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 15 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 12 130 212 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 25 23 3 26 3 0 8 127 208 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 14 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 12 128 210 -5.690 -0.057 -5.690 -2.162 1.692 -2.374 -1.504 D 28 26 3 29 3 0 7 125 207 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 11 127 209 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 31 29 3 32 3 0 6 124 205 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 13 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 10 126 207 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 34 32 3 35 3 0 6 123 204 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 12 132 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 10 124 206 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 37 35 3 38 3 0 5 121 202 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 11 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 9 123 204 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 40 38 3 41 3 0 4 120 201 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 11 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 8 122 203 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 43 41 3 44 3 0 4 118 199 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 10 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 8 120 201 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 46 44 3 47 3 0 3 117 198 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 9 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 7 119 200 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 49 47 3 50 3 0 2 116 196 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 9 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 7 118 198 -5.690 -0.057 -5.690 -2.162 1.692 -2.374 -1.504 D 52 50 3 53 3 0 2 114 194 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 8 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 6 116 196 -5.690 -0.057 -5.690 -2.162 1.692 -2.374 -1.504 D 55 53 3 56 3 0 1 113 193 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 5 115 195 -5.690 -0.057 -5.690 -2.162 1.692 -2.374 -1.504 D 58 56 3 59 3 0 1 112 191 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 5 113 193 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 61 59 3 62 3 0 0 110 190 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 4 112 192 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 64 62 3 65 3 0 0 109 188 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 6 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 4 111 190 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 67 65 3 68 3 0 0 107 187 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 5 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 3 109 189 -5.690 -0.057 -5.690 -2.162 1.692 -2.374 -1.504 D 70 68 3 71 3 0 0 106 185 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 5 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 3 108 187 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 73 71 3 74 3 0 0 105 183 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 4 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 75 74 3 77 3 1 2 106 185 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 76 74 3 77 3 0 0 103 182 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 4 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 2 105 184 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 79 77 3 80 3 0 0 102 180 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 3 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 2 104 182 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 82 80 3 83 3 0 0 100 179 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 3 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 1 102 181 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 85 83 3 86 3 0 0 99 177 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 3 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - c - - - ML 87 86 3 89 3 1 1 101 179 -5.690 -0.057 -5.690 -1.327 0.982 -1.514 0.352 D 88 86 3 89 3 0 0 97 175 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - c - - - ML 90 89 3 92 3 1 1 99 177 -5.690 -0.057 -5.690 -1.317 0.958 -1.502 0.382 D 91 89 3 92 3 0 0 96 174 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 93 92 3 95 3 1 1 98 176 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 94 92 3 95 3 0 0 95 172 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 1 96 174 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 97 95 3 98 3 0 0 93 170 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 1 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - u - - - ML 99 98 3 101 3 1 1 95 172 -5.690 -0.057 -5.690 -1.221 0.300 -1.400 0.971 D 100 98 3 101 3 0 0 92 169 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 1 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - g - - - ML 102 101 3 104 3 1 1 94 171 -5.690 -0.057 -5.690 0.137 0.038 0.207 -0.475 D 103 101 3 104 3 0 0 90 167 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - u - - - ML 105 104 3 107 3 1 1 92 169 -5.690 -0.057 -5.690 -0.668 0.079 0.122 0.294 D 106 104 3 107 3 0 0 89 165 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - - - ML 108 107 3 110 3 1 1 91 167 -5.690 -0.057 -5.690 -2.162 1.692 -2.374 -1.504 D 109 107 3 110 3 0 0 87 163 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - u - - - ML 111 110 3 113 3 1 1 89 166 -5.690 -0.057 -5.690 -1.221 0.300 -1.400 0.971 D 112 110 3 113 3 0 0 86 162 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 114 113 3 116 3 1 1 88 164 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 115 113 3 116 3 0 0 84 160 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - - - ML 117 116 3 119 3 1 1 86 162 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 118 116 3 119 3 0 0 82 158 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 120 119 3 122 3 1 1 84 160 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 121 119 3 122 3 0 0 81 156 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 123 122 3 125 3 1 1 83 158 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 124 122 3 125 3 0 0 79 154 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - U - - - ML 126 125 3 128 3 1 1 81 157 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 127 125 3 128 3 0 0 78 153 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 129 128 3 131 3 1 1 80 155 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 130 128 3 131 3 0 0 76 151 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 132 131 3 134 3 1 1 78 153 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 133 131 3 134 3 0 0 74 149 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 135 134 3 137 3 1 1 77 151 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 136 134 3 137 3 0 0 73 147 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - c - - - ML 138 137 3 140 3 1 1 75 149 -5.690 -0.057 -5.690 -1.327 0.982 -1.514 0.352 D 139 137 3 140 3 0 0 71 145 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - G - - - ML 141 140 3 143 3 1 1 73 147 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 142 140 3 143 3 0 0 69 143 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - A - - - ML 144 143 3 146 3 1 1 71 145 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 145 143 3 146 3 0 0 68 141 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - U - - - ML 147 146 3 149 3 1 1 70 143 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 148 146 3 149 3 0 0 66 138 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - U - - - ML 150 149 3 152 3 1 1 68 141 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 151 149 3 152 3 0 0 64 136 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 66 139 -5.690 -0.057 -5.690 -1.898 -1.531 -2.068 1.654 D 154 152 3 155 3 0 0 62 134 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 64 136 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 157 155 3 158 3 0 0 60 131 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - a - - - ML 159 158 3 161 3 1 1 62 134 -5.690 -0.057 -5.690 0.810 -1.355 0.439 -1.000 D 160 158 3 161 3 0 0 58 129 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - C - - - ML 162 161 3 164 3 1 1 60 131 -5.690 -0.057 -5.690 -2.162 1.692 -2.374 -1.504 D 163 161 3 164 3 0 0 55 126 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - A - - - ML 165 164 3 167 3 1 1 58 129 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 166 164 3 167 3 0 0 52 123 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - G - - - ML 168 167 3 170 3 1 1 55 126 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 169 167 3 170 3 0 0 49 119 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - A - - - ML 171 170 3 173 3 1 1 52 122 -5.690 -0.057 -5.690 1.764 -2.484 -2.221 -2.248 D 172 170 3 173 3 0 0 44 114 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 174 173 3 176 3 1 1 48 117 -5.690 -0.057 -5.690 -1.915 -2.739 1.767 -2.459 D 175 173 3 176 3 0 0 32 101 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - C - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -2.162 1.692 -2.374 -1.504 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME GlsR6 ACC RF02475 DESC Small nucleolar RNA GlsR6 LENG 59 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Mon Jul 8 17:53:11 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02475/CM NSEQ 3 EFFN 2.961914 CKSUM 466948067 STATS LOCAL MSV -8.1253 0.71896 STATS LOCAL VITERBI -8.5790 0.71896 STATS LOCAL FORWARD -3.8635 0.71896 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37671 1.59686 1.35383 1.24893 1.38629 1.38629 1.38629 1.38629 0.02331 5.07308 4.08791 0.39730 1.11515 0.00000 * 1 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 2 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 3 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 4 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 5 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 6 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 7 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 8 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 9 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 10 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 11 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 12 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 13 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 14 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 15 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 16 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 17 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 18 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 19 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 20 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 21 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 22 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 23 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 24 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 25 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 26 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 27 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 28 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 29 2.30625 0.70573 2.43548 1.14236 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 30 2.29892 0.72248 2.42768 1.12134 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 31 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 32 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 33 2.23283 1.17804 2.35680 0.71300 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 34 1.29149 1.36023 1.24261 1.71531 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 35 1.84907 1.33153 1.30160 1.18271 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 36 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 37 2.23283 1.17804 2.35680 0.71300 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 38 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 39 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 40 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 41 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 42 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 43 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 44 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 45 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 46 2.30625 0.70573 2.43548 1.14236 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 47 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 48 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 49 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 50 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 51 2.70178 2.44737 2.81950 0.23984 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 52 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 53 0.82491 2.32582 1.08169 2.07946 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 54 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 55 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 56 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 57 0.16362 3.10831 2.92564 2.94446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 58 2.71339 3.28484 0.16162 3.09050 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03952 3.94389 3.94389 1.46634 0.26236 1.09861 0.40547 59 2.88455 0.21354 3.03155 2.42860 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //