# STOCKHOLM 1.0
#=GF ID Ms_IGR-7
#=GF AC RF02469
#=GF DE Actinobacteria sRNA Ms_IGR-7
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 45.0
#=GF NC 44.9
#=GF TC 45.0
#=GF SE Eberhardt R
#=GF SS Predicted; PMID:23169799
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.71 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 23169799
#=GF RT Identification of small RNAs in Mycobacterium smegmatis using heterologous
#=GF RT Hfq.
#=GF RA Li SK, Ng PK, Qin H, Lau JK, Lau JP, Tsui SK, Chan TF, Lau TC
#=GF RL RNA. 2013;19:74-84.
#=GF WK Bacterial_small_RNA
#=GF SQ 14

AFAQ01001960.1/4293-4412             UGGAAGUGC-CUUU-CUUGAAC-UGGACUGGUUUGUGCGU-GAAGAACAUCAAUCAUCCCAGUUCAGGGGGCGCUUUCUUUAUUUCG---ACACGCC-GCUAC-CCGCCGGG--G-GCA-UCGGUGGAUUCAG
#=GR AFAQ01001960.1/4293-4412     PP *********.****.88*****.*****************.**********************************************...******9.99999.65516999..9.***.*************
CP000854.1/3843116-3843234           CGGAAGUGCCGUUC-U-CGAAC-UGGACCGAUUGUUGCCU-GAACAAUAUCAAUCUUCCCAGCUCAGAACGCACUUUCCUUAUCCCG---ACACCCCGACAAA-CAG-UCCA--U-U-G-UCAGUGGAUCGAG
#=GR CP000854.1/3843116-3843234   PP ********648888.9.*****.*****************.**********************************************...***9987456666.666.6666..5.4.5.6889*********
CAFW01000025.1/44348-44232           CAGAGGUGC-CUUU-C-UGAUCCUAGAA--AUAGUGGCGU-GAACAACUACUAUUAUUCCAGGUCAAAAGGCACUUCUUCAGUUAAA---CCGCCGA-ACUCA-CAC-CAAA--U-UUA-UCGGUGGAUCCAG
#=GR CAFW01000025.1/44348-44232   PP *********.****.*.***99787766..**********.***************9999999********************9999...9999999.*****.***.****..*.***.*************
CP000667.1/3059689-3059577           -CGAGGUGC-CCUC-U-CGAAC-CGGC-UGAUAGAAGCGU-CG-UAACUCCGAUCUUCCCAGUUCAGAGGGCACUUCUAUC-UCCGG---GGUCCCG-UCGA----G-CCGAGCU-UCG-UCGGUGGAUCGAG
#=GR CP000667.1/3059689-3059577   PP .799*****.****.*.*****.7765.9***********.**.9*****************************9975555.44455...5566666.6655....5.5555559.***.*************
CP002047.1/10314482-10314600         CGGAGAUGU-ACCU-C-CGAAC-UGGUCGAGUAGAAGCCU-AGAGAACUCCUAUUCUCCCAGGUCAGAGUGCAUCUCCACUUUCAUGUCCAAACACU--GGAC-CAA-CCG-----UCACCCGGUGGAUCGAG
#=GR CP002047.1/10314482-10314600 PP *********.****.*.*****.*****************.*************************************7555544441004444443..4566.666.666.....5552578899*******
CP000480.1/1402449-1402332           CGGAAGUGC-CUUU-C-UGACCGUGGGCUGAUCGAAGUGU-GG-UAACUCCAAUCAUCCCAGCUCAAAGGGCACUUUCCUUAUAUCA---ACACCCU-CCGAC-CAG-GCGA--U-UCA-UCGGUGGAUCGAG
AGSZ01000509.1/1542-1659             CGGAAGUGC-CUUU-C-UGACC-UGGACUGAUUAGUGCGUCGA-GAACACCAAUCUUCCCAGUUCAAAGGGCACUUUCCUCAUUCCG---ACACCCU-GCGAC-CAG-CCGA--U-ACA-UCGGUGGAUCGAG
CP000479.1/1447034-1447152           CGGAAGUGC-CUUU-C-UGACCA-GGACUGAUUGUUGCGU-AGAGAACAUCAAUCUUUCCAGCUCAGAGGGCACUUUCCUCGUUACG---ACACCCGGUCAAC-GAG-CCCG--U-UCA-UCGGUGGAUUCAG
CP002385.1/875738-875855             CGGAAGUGC-CUUU-C-UGAAC-UGGCCUGAUUGAUGCGU-AGAGAACACCAAUCCUCCCAGCUCAAGGGGCACUUUCCUCAUUCCG---ACACCCC-ACGAC-CAA-CCAA--U-UUA-UCGGUGGAUCGAG
CP000511.1/5931006-5930889           CGGAAGUGC-CUUU-C-GGAGU-UGUGUCGAUAAGUGCGU-AGAGAACACUCAUCAUCACAGCUCAGAGGGCACUUUCCUCGUUACG---ACACCCG-AUGAC-CAG-CUGA--U-UCA-UCGGUGGAUCGAG
CP000656.1/4916615-4916498           CGGAAGUGC-CUUU-C-CGAGU-UGUGCCGAUAAGUGCGU-AGAGAACACUCAUCAUCGCAGCUCAGAGGGCACUUUCCUCAUUCCG---ACACCCC-ACGAC-CAG-CCAA--U-UCA-UCGGUGGAUCGAG
CP000385.1/10110-9992                UGGAAGUGC-CUUU-C-UUAAC-UGGCCUGAUUGAUGCGU-AGAGAACACCAAUCCUCCCAGCUCAAGGGGCACUUUCCUUAUAUCG---ACACCCA-CCUACACAG-GCAA--U-UCA-UCGGUGGAUCGAG
AACY022400814.1/578-461              CGGAAGUGC-CUUU-CUUGUGC-UGAAACGAUUUUAGUGU-GA-GAACUCAAAUCAUCCCAGCUCAGAGGGCACUUUCUUUACUCCG---ACACCCG-CCCGG-AA--CCUA--UCUCA-UCGGUGGAUCGAG
AGVE01000027.1/548-430               CGGAAGUGC-CUUUUC-GGAGCCGGGUCCGAUUAAUGCGU-GA-GAACAUCAAUCAUCCCAGCUCAGAGGGCACUUUCCUCAUUCCG---ACACUCG-AUGAA-CAG-CUAA--U-UCA-UCCGUGGAUUCAG
#=GC SS_cons                         :<<<<<<<<.<<<<.-.<<<-<.<<<<-<<<<-<-<<<__._____>>>->->>>>->>>>>->>>>>>>>>>>>>>>:::::::::...:::::::.:::::.:::.:<<<..<.<<<.____>>>>>>>::
#=GC RF                              CggAaGUGC.ccuc.C.uGAaC.uGggccGaUugauGcGU.agAgAaCaccaAuCgUccCaGcUCagaggGCACuUcccUuaUuacG...AcACcCu.acgAc.cAg.ccga..U.uCa.UCGGuGgAucgAG
//
