INFERNAL1/a [1.1.5 | Sep 2023] NAME Virus_CITE_4 ACC RF02459 DESC Necrovirus cap-independent translation element STATES 264 NODES 67 CLEN 85 W 102 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 21:24:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02459/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 1.459961 CKSUM 3477280846 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 47.50 NC 38.00 EFP7GF -8.2014 0.71888 ECMLC 0.66470 -5.24376 2.93371 1600000 275318 0.004359 ECMGC 0.42379 -15.65711 -3.70926 1600000 63249 0.006324 ECMLI 0.64114 -3.38676 4.67639 1600000 211015 0.005687 ECMGI 0.47364 -10.00841 0.28498 1600000 52410 0.007632 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 102 123 -9.032 -8.971 -0.067 -4.861 -8.028 -8.423 IL 1 1 2 1 6 4 33 104 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 4 33 104 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 89 u a - - MP 3 2 3 7 6 6 33 102 123 -8.989 -8.928 -0.023 -7.704 -7.984 -8.379 -3.085 -2.732 -3.107 0.877 -2.577 -3.861 1.737 -3.062 -3.126 1.834 -3.595 -0.600 2.166 -3.276 -0.266 -2.039 ML 4 2 3 7 6 3 30 101 121 -6.710 -7.056 -1.770 -0.655 -6.906 -4.435 0.038 -0.849 0.683 -0.300 MR 5 2 3 7 6 3 30 101 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 1 26 98 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 4 32 102 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 4 32 102 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 88 g c - - MP 9 8 6 13 6 5 31 100 121 -8.989 -8.928 -0.023 -7.704 -7.984 -8.379 -3.000 -2.425 -3.044 1.458 -2.908 -3.830 1.392 -3.203 -3.109 2.361 -3.579 -0.233 1.413 -3.142 -0.581 -2.007 ML 10 8 6 13 6 3 30 99 119 -6.710 -7.056 -1.770 -0.655 -6.906 -4.435 -0.071 0.483 -0.773 0.091 MR 11 8 6 13 6 3 30 99 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 26 96 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 3 30 100 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 3 30 100 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 87 G C - - MP 15 14 6 19 4 3 29 98 119 -3.396 -7.805 -0.595 -2.067 -4.147 -2.815 -4.210 0.580 -4.395 -4.446 0.100 -4.396 -3.912 3.455 -4.296 -0.501 -0.306 -4.071 -1.910 -3.096 ML 16 14 6 19 4 2 29 98 118 -3.253 -5.377 -0.577 -2.318 0.038 -0.849 0.683 -0.300 MR 17 14 6 19 4 2 29 97 118 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 25 95 115 -12.737 -14.007 -2.036 -0.404 IL 19 19 5 19 4 3 30 99 119 -1.468 -5.101 -0.944 -3.479 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 3 30 98 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 86 - a - - MR 21 20 6 23 3 4 31 96 116 -7.924 -0.025 -6.242 0.650 -0.084 -0.813 -0.123 D 22 20 6 23 3 0 25 94 114 -7.519 -2.697 -0.251 IR 23 23 3 23 3 3 30 97 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 85 - a - - MR 24 23 3 26 3 3 30 95 115 -7.924 -0.025 -6.242 0.650 -0.084 -0.813 -0.123 D 25 23 3 26 3 0 24 93 113 -7.519 -2.697 -0.251 IR 26 26 3 26 3 3 29 96 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 84 - C - - MR 27 26 3 29 3 3 29 94 114 -7.924 -0.025 -6.242 -0.709 1.163 -1.472 -0.343 D 28 26 3 29 3 0 24 93 113 -7.519 -0.521 -1.749 IR 29 29 3 29 3 2 28 95 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 83 - A - - MR 30 29 3 32 5 2 29 93 113 -6.929 -0.044 -6.744 -6.956 -7.848 1.089 -1.287 -0.220 -0.727 D 31 29 3 32 5 0 22 91 112 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 26 93 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 82 a u - - MP 33 32 3 37 6 4 30 92 112 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -3.156 -2.226 -3.271 2.191 -3.726 -4.434 0.504 -3.450 -3.152 1.801 -3.676 1.941 0.226 -3.623 -1.394 -2.130 ML 34 32 3 37 6 1 24 90 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 23 90 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 19 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 25 91 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 26 91 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 81 c g - - MP 39 38 6 43 6 3 30 90 110 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -2.463 -2.480 -2.576 0.857 -2.166 -3.360 2.062 -2.658 -0.649 1.069 -3.128 -0.735 2.042 -2.733 -0.043 -1.655 ML 40 38 6 43 6 1 23 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 23 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 18 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 25 89 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 25 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 80 g c - - MP 45 44 6 49 6 3 29 88 108 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -2.486 -2.143 1.514 1.240 -2.688 -3.586 1.077 -2.864 -2.632 1.559 -3.178 0.882 0.803 -2.844 -0.649 -1.691 ML 46 44 6 49 6 1 23 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 23 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 18 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 24 87 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 25 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 79 u a - - MP 51 50 6 55 6 3 28 86 106 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -2.990 -2.696 -3.040 1.580 -2.559 -3.844 1.703 -3.021 -3.051 1.336 -3.542 -0.589 2.142 -3.227 -0.281 -1.990 ML 52 50 6 55 6 1 22 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 22 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 18 82 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 24 85 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 24 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 78 g c - - MP 57 56 6 61 6 3 27 84 104 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -3.169 -2.465 -3.189 1.465 -3.140 -3.930 1.509 -3.388 -3.276 2.580 -3.720 -0.238 0.840 -3.251 -0.766 -2.144 ML 58 56 6 61 6 1 22 82 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 22 82 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 17 80 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 23 83 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 24 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 77 c g - - MP 63 62 6 67 6 3 26 82 102 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -3.267 -2.831 -3.260 0.800 -2.696 -3.962 2.358 -3.196 -3.289 2.109 -3.732 -0.670 1.160 -3.406 -0.350 -2.172 ML 64 62 6 67 6 1 22 80 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 21 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 17 78 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 23 81 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 23 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 76 A U - - MP 69 68 6 73 6 3 24 80 100 -9.032 -8.971 -0.122 -3.823 -8.028 -8.423 -3.495 -2.607 -3.532 3.096 -3.726 -4.766 0.557 -3.591 -3.439 1.401 -3.971 -0.136 0.137 -4.001 -1.386 -2.386 ML 70 68 6 73 6 1 21 78 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 20 78 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 17 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 22 79 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 22 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 75 a u - - MP 75 74 6 79 6 3 23 78 98 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.181 -2.386 -3.229 2.668 -3.256 -4.292 1.017 -3.294 -3.156 1.770 -3.669 0.016 0.587 -3.584 -0.934 -2.108 ML 76 74 6 79 6 1 21 77 97 -7.124 -7.471 -0.568 -1.879 -7.320 -4.850 -0.423 -0.647 -1.070 1.097 MR 77 74 6 79 6 1 19 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 16 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 21 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 21 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 74 G C - - MP 81 80 6 85 4 2 21 76 96 -6.741 -6.948 -0.062 -5.363 -4.373 -2.920 -4.446 0.439 -4.713 -4.544 -0.167 -4.657 -4.077 3.536 -4.442 -0.609 -0.564 -4.224 -2.186 -3.329 ML 82 80 6 85 4 1 19 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 17 75 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 16 74 95 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 20 77 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 20 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - c - - - ML 87 86 6 89 3 1 19 73 94 -8.177 -0.021 -6.495 0.311 0.492 -1.065 -0.193 D 88 86 6 89 3 0 15 72 92 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 19 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 73 - A - - MR 90 89 3 92 3 1 18 72 93 -8.177 -0.021 -6.495 1.622 -1.991 -1.662 -1.499 D 91 89 3 92 3 0 14 71 91 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 18 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 72 - C - - MR 93 92 3 95 3 1 18 71 92 -8.177 -0.021 -6.495 -1.290 1.476 -2.094 -0.798 D 94 92 3 95 3 0 13 70 90 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 17 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 71 - u - - MR 96 95 3 98 3 1 17 70 90 -8.177 -0.021 -6.495 0.011 -0.759 -1.107 0.954 D 97 95 3 98 3 0 12 69 89 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 16 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 70 - A - - MR 99 98 3 101 3 1 16 69 89 -8.177 -0.021 -6.495 1.001 -0.967 -1.015 -0.011 D 100 98 3 101 3 0 12 68 88 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 16 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 69 - c - - MR 102 101 3 104 5 1 15 68 88 -6.929 -0.044 -6.744 -6.956 -7.848 0.048 0.738 -1.182 -0.221 D 103 101 3 104 5 0 11 67 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 14 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 68 c g - - MP 105 104 3 109 6 2 14 67 87 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -2.402 -2.429 -2.520 0.806 -2.113 -3.273 2.240 -2.609 -2.551 0.966 -0.705 -0.760 1.376 -2.677 1.052 -1.622 ML 106 104 3 109 6 1 12 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 11 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 9 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 13 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 13 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 67 G C - - MP 111 110 6 115 4 2 13 65 85 -6.741 -6.948 -0.062 -5.363 -3.815 -2.607 -3.861 0.867 -4.341 -4.385 0.142 -4.170 -3.741 3.264 -4.152 0.570 -0.161 -3.826 -1.835 -2.767 ML 112 110 6 115 4 1 11 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 10 65 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 8 64 84 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 12 67 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 12 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - G - - - ML 117 116 6 119 3 1 11 63 83 -7.774 -0.024 -6.428 -1.174 -2.325 1.609 -1.710 D 118 116 6 119 3 0 8 62 82 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - A - - - ML 120 119 3 122 3 1 10 62 82 -7.774 -0.024 -6.428 1.622 -1.991 -1.662 -1.499 D 121 119 3 122 3 0 7 61 81 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 10 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - U - - - ML 123 122 3 125 3 1 9 61 81 -8.177 -0.021 -6.495 -1.143 -1.201 -1.856 1.504 D 124 122 3 125 3 0 7 60 80 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 9 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 66 - u - - MR 126 125 3 128 3 1 8 60 80 -8.177 -0.021 -6.495 0.287 -0.245 -0.933 0.498 D 127 125 3 128 3 0 6 59 78 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 8 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 65 - G - - MR 129 128 3 131 2 1 7 59 79 -8.125 -0.005 -1.174 -2.325 1.609 -1.710 D 130 128 3 131 2 0 6 58 78 -4.432 -0.068 IR 131 131 3 131 2 1 7 60 80 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 30 ] - - - - - - B 132 131 3 133 174 0 6 58 78 [ BEGL 31 ] - - - - - - S 133 132 1 134 4 0 0 27 46 -0.048 -6.733 -6.140 -6.780 [ MATP 32 ] 22 34 C G - - MP 134 133 1 138 6 2 2 27 46 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -4.172 -4.041 -3.923 -0.312 -2.731 -4.384 3.415 -3.502 -3.963 -0.009 -4.261 -1.985 0.818 -4.265 -0.431 -2.816 ML 135 133 1 138 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 1 138 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 1 138 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 33 C G - - MP 140 139 6 144 6 2 2 25 44 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -4.172 -4.041 -3.923 -0.312 -2.731 -4.384 3.415 -3.502 -3.963 -0.009 -4.261 -1.985 0.818 -4.265 -0.431 -2.816 ML 141 139 6 144 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 24 32 U A - - MP 146 145 6 150 6 2 2 23 42 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -3.814 -3.623 -3.692 0.052 -2.719 -4.289 1.599 -3.386 -3.701 0.372 -4.092 -1.533 3.111 -3.977 -0.405 -2.559 ML 147 145 6 150 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 25 31 G C - - MP 152 151 6 156 4 2 2 21 40 -6.741 -6.948 -0.062 -5.363 -4.373 -2.920 -4.446 0.439 -4.713 -4.544 -0.167 -4.657 -4.077 3.536 -4.442 -0.609 -0.564 -4.224 -2.186 -3.329 ML 153 151 6 156 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 26 - G - - - ML 158 157 6 160 3 1 1 18 36 -7.774 -0.024 -6.428 -1.174 -2.325 1.609 -1.710 D 159 157 6 160 3 0 0 17 36 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 27 - G - - - ML 161 160 3 163 3 1 1 16 35 -7.774 -0.024 -6.428 -0.076 -1.556 1.134 -0.951 D 162 160 3 163 3 0 0 16 34 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 28 - A - - - ML 164 163 3 166 3 1 1 15 33 -7.774 -0.024 -6.428 1.622 -1.991 -1.662 -1.499 D 165 163 3 166 3 0 0 15 33 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 29 - A - - - ML 167 166 3 169 3 1 1 13 32 -7.774 -0.024 -6.428 1.622 -1.991 -1.662 -1.499 D 168 166 3 169 3 0 0 13 32 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - A - - - ML 170 169 3 172 2 1 1 1 1 * 0.000 1.622 -1.991 -1.662 -1.499 D 171 169 3 172 2 0 0 0 0 * 0.000 IL 172 172 3 172 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 173 172 3 -1 0 0 0 0 0 [ BEGR 42 ] - - - - - - S 174 132 1 175 3 0 0 44 64 -7.774 -0.024 -6.428 IL 175 175 2 175 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - u - - - ML 176 175 2 178 3 1 1 44 64 -7.774 -0.024 -6.428 -0.568 0.164 -1.316 0.851 D 177 175 2 178 3 0 0 43 62 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 36 - U - - - ML 179 178 3 181 3 1 1 43 63 -7.774 -0.024 -6.428 -1.143 -1.201 -1.856 1.504 D 180 178 3 181 3 0 0 42 61 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 37 - U - - - ML 182 181 3 184 3 1 1 42 61 -3.585 -0.144 -6.428 -1.143 -1.201 -1.856 1.504 D 183 181 3 184 3 0 0 40 59 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 43 62 -1.656 -0.658 -4.356 0.000 0.000 0.000 0.000 [ MATL 46 ] 39 - a - - - ML 185 184 3 187 3 1 1 41 60 -7.774 -0.024 -6.428 0.854 -1.228 0.172 -0.645 D 186 184 3 187 3 0 0 39 59 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 40 - A - - - ML 188 187 3 190 3 1 1 39 59 -7.774 -0.024 -6.428 1.622 -1.991 -1.662 -1.499 D 189 187 3 190 3 0 0 38 58 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 41 - C - - - ML 191 190 3 193 3 1 1 38 58 -7.774 -0.024 -6.428 -1.290 1.476 -2.094 -0.798 D 192 190 3 193 3 0 0 37 56 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 42 - G - - - ML 194 193 3 196 5 1 1 37 56 -6.929 -0.044 -6.744 -6.956 -7.848 0.002 -1.509 1.080 -0.905 D 195 193 3 196 5 0 0 36 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 196 196 3 196 5 1 1 38 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 43 64 G C - - MP 197 196 3 201 6 2 2 36 55 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -4.373 -2.920 -4.446 0.439 -4.713 -4.544 -0.167 -4.657 -4.077 3.536 -4.442 -0.609 -0.564 -4.224 -2.186 -3.329 ML 198 196 3 201 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 199 196 3 201 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 200 196 3 201 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 201 201 5 201 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 202 202 6 202 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 44 63 G C - - MP 203 202 6 207 6 2 2 34 53 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -4.373 -2.920 -4.446 0.439 -4.713 -4.544 -0.167 -4.657 -4.077 3.536 -4.442 -0.609 -0.564 -4.224 -2.186 -3.329 ML 204 202 6 207 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 205 202 6 207 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 206 202 6 207 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 207 207 5 207 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 208 208 6 208 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 45 62 c g - - MP 209 208 6 213 6 2 2 32 51 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -3.275 -3.217 -3.232 0.435 -2.342 -3.873 2.483 -2.999 -3.247 0.703 -3.678 -1.253 2.046 -3.452 0.744 -2.156 ML 210 208 6 213 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 211 208 6 213 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 212 208 6 213 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 213 213 5 213 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 214 214 6 214 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 46 61 c g - - MP 215 214 6 219 6 2 2 30 49 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -2.875 -2.781 -2.926 1.166 -2.338 -3.668 1.863 -2.883 -2.953 1.083 -3.437 -0.855 1.688 -3.099 1.482 -1.919 ML 216 214 6 219 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 217 214 6 219 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 218 214 6 219 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 219 219 5 219 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 220 220 6 220 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 47 60 g c - - MP 221 220 6 225 6 2 2 28 47 -9.032 -8.971 -0.022 -7.748 -8.028 -8.423 -3.138 -2.658 -3.145 0.948 -2.754 -3.862 1.877 -3.194 -3.222 2.306 -3.669 -0.509 1.463 -3.241 -0.408 -2.089 ML 222 220 6 225 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 223 220 6 225 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 224 220 6 225 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 225 225 5 225 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 226 226 6 226 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 48 59 G C - - MP 227 226 6 231 4 2 2 26 45 -6.741 -6.948 -0.221 -3.005 -3.682 -2.566 -3.717 1.443 -4.081 -4.347 0.378 -3.987 -3.644 3.151 -4.071 -0.216 0.048 -3.742 -1.603 -2.619 ML 228 226 6 231 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 229 226 6 231 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 230 226 6 231 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 231 231 5 231 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 232 232 6 232 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 49 - g - - - ML 233 232 6 235 3 1 1 24 42 -7.634 -0.026 -6.288 -0.177 -0.325 0.572 -0.268 D 234 232 6 235 3 0 0 22 41 -6.978 -0.725 -1.370 IL 235 235 3 235 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 50 - g - - - ML 236 235 3 238 3 1 1 22 41 -7.774 -0.024 -6.428 -0.403 -1.141 0.897 -0.108 D 237 235 3 238 3 0 0 21 40 -6.174 -1.687 -0.566 IL 238 238 3 238 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 51 - G - - - ML 239 238 3 241 3 1 1 21 40 -7.774 -0.024 -6.428 -1.174 -2.325 1.609 -1.710 D 240 238 3 241 3 0 0 20 39 -6.174 -1.687 -0.566 IL 241 241 3 241 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 52 - U - - - ML 242 241 3 244 3 1 1 20 39 -7.774 -0.024 -6.428 -1.143 -1.201 -1.856 1.504 D 243 241 3 244 3 0 0 19 38 -6.174 -1.687 -0.566 IL 244 244 3 244 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 53 - G - - - ML 245 244 3 247 3 1 1 19 38 -7.774 -0.024 -6.428 -1.174 -2.325 1.609 -1.710 D 246 244 3 247 3 0 0 18 37 -6.174 -1.687 -0.566 IL 247 247 3 247 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 54 - G - - - ML 248 247 3 250 3 1 1 18 36 -7.774 -0.024 -6.428 -1.174 -2.325 1.609 -1.710 D 249 247 3 250 3 0 0 17 36 -6.174 -1.687 -0.566 IL 250 250 3 250 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 55 - U - - - ML 251 250 3 253 3 1 1 16 35 -7.774 -0.024 -6.428 -1.143 -1.201 -1.856 1.504 D 252 250 3 253 3 0 0 16 34 -6.174 -1.687 -0.566 IL 253 253 3 253 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 56 - g - - - ML 254 253 3 256 3 1 1 15 33 -7.774 -0.024 -6.428 -0.450 -1.220 0.990 -0.231 D 255 253 3 256 3 0 0 15 33 -6.174 -1.687 -0.566 IL 256 256 3 256 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 57 - c - - - ML 257 256 3 259 3 1 1 13 32 -7.774 -0.352 -2.239 -0.382 0.714 -0.455 -0.213 D 258 256 3 259 3 0 0 13 32 -6.174 -1.687 -0.566 IL 259 259 3 259 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 58 - C - - - ML 260 259 3 262 2 1 1 1 1 * 0.000 -0.622 1.097 -1.377 -0.277 D 261 259 3 262 2 0 0 0 0 * 0.000 IL 262 262 3 262 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 66 ] - - - - - - E 263 262 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Virus_CITE_4 ACC RF02459 DESC Necrovirus cap-independent translation element LENG 85 MAXL 173 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 21:24:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02459/CM NSEQ 5 EFFN 2.592773 CKSUM 3477280846 STATS LOCAL MSV -9.3888 0.71888 STATS LOCAL VITERBI -9.7731 0.71888 STATS LOCAL FORWARD -3.4750 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47252 1.43102 1.17903 1.49607 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 0.00000 * 1 2.06003 1.58178 1.28006 0.94438 1 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 2 1.58224 1.76303 0.93207 1.47305 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 3 2.49211 3.11276 0.19287 3.03242 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.15419 2.08615 3.97775 1.14053 0.38515 1.09861 0.40547 4 1.00748 2.81798 0.68749 2.62694 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 5 2.06948 1.22223 1.61130 0.96877 8 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 6 0.69472 2.42815 1.16583 2.29341 9 a - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 7 1.45112 1.61434 1.76980 0.92557 10 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 8 1.57708 1.70134 0.76062 1.94068 11 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 9 2.18677 0.96633 1.12979 1.69205 12 c - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 10 0.29686 2.91577 1.93593 2.84041 13 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 11 0.63746 2.28619 1.57620 1.81428 14 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 12 2.59615 3.27867 0.16663 3.18803 15 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 13 1.16623 0.89715 2.34907 1.68594 16 c - - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 14 2.16169 1.03770 1.66132 1.07672 17 c - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 15 2.22627 2.95743 0.24743 2.82491 18 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 16 2.82070 3.71452 0.12920 3.28948 19 G - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 17 0.13641 3.35729 3.06993 3.07341 20 A - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 18 2.72118 2.66635 3.24285 0.19159 21 U - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 19 3.33212 0.21127 3.11363 2.20464 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 20 3.32559 0.21190 3.11043 2.20349 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 21 3.10840 2.00478 2.87134 0.26917 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 22 2.66202 3.36008 0.15254 3.29866 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 23 2.82070 3.71452 0.12920 3.28948 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 24 1.56118 2.82281 0.44289 2.42479 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 25 0.13641 3.35729 3.06993 3.07341 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 26 0.13641 3.35729 3.06993 3.07341 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 27 0.13641 3.35729 3.06993 3.07341 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 28 3.49005 0.18174 3.19424 2.35724 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 29 0.30608 3.05405 1.84109 2.84969 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 30 2.47703 3.26860 0.18442 3.07130 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 31 2.47350 3.26360 0.18534 3.06540 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 32 2.02200 1.20130 2.56513 0.71356 35 u - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 33 2.72118 2.66635 3.24285 0.19159 36 U - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 34 2.72118 2.66635 3.24285 0.19159 37 U - - , 1.38629 1.38629 1.38629 1.38629 0.15419 2.08615 3.97775 0.27841 1.41463 1.09861 0.40547 35 0.70648 2.49697 1.19590 2.10492 39 a - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 36 0.13641 3.35729 3.06993 3.07341 40 A - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 37 2.98942 0.17473 3.56547 2.50451 41 C - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 38 1.48310 2.77437 0.48172 2.37564 42 G - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 39 2.66446 3.36312 0.15204 3.30285 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 40 2.66332 3.36170 0.15227 3.30090 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 41 2.43414 0.95265 2.20063 0.87737 45 u - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 42 1.78334 1.49287 1.92683 0.77308 46 u - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 43 2.02325 1.39418 0.96026 1.43992 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 44 1.63853 2.74431 0.40211 2.62367 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.17519 3.97775 1.95213 1.46634 0.26236 1.09861 0.40547 45 1.68244 1.61698 0.81059 1.76617 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04366 3.84622 3.84622 1.46634 0.26236 0.23414 1.56661 46 1.90474 2.43834 0.59163 1.55870 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 47 2.82070 3.71452 0.12920 3.28948 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 48 2.72118 2.66635 3.24285 0.19159 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 49 2.82070 3.71452 0.12920 3.28948 53 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 50 2.82070 3.71452 0.12920 3.28948 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 51 2.72118 2.66635 3.24285 0.19159 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 52 1.96236 2.52068 0.52348 1.67872 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 53 1.90811 0.69021 1.74027 1.74471 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.36439 3.97775 1.24949 1.46634 0.26236 1.09861 0.40547 54 2.24726 0.37689 2.80268 1.91274 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05252 3.66587 3.66587 1.46634 0.26236 0.12281 2.15792 55 2.85620 0.46099 2.56036 1.44996 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 56 1.62289 1.04568 1.26425 1.77923 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 57 1.45874 2.09405 0.80101 1.63267 61 g - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 58 1.18718 2.36923 0.71110 2.20489 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 59 3.48973 0.18176 3.19409 2.35718 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 60 3.48397 0.18223 3.19147 2.35608 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 61 2.82070 3.71452 0.12920 3.28948 65 G - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 62 1.16987 1.54753 2.15435 1.01932 66 u - - , 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 63 3.05822 0.37725 2.77824 1.58408 67 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 64 1.76276 2.17447 0.55397 1.96541 68 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 65 1.42662 0.69317 2.48536 1.73388 69 c - - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 66 0.58944 2.23240 2.28673 1.44184 70 A - - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 67 1.44119 2.09955 2.37051 0.60256 71 U - - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 68 2.98942 0.17473 3.56547 2.50451 72 C - - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 69 0.13641 3.35729 3.06993 3.07341 73 A - - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 70 3.47800 0.18271 3.18876 2.35494 74 C - - ) 1.38629 1.38629 1.38629 1.38629 0.31521 3.97775 1.37976 1.46634 0.26236 1.09861 0.40547 71 2.49185 1.75476 2.12864 0.46953 75 U - - ) 1.38629 1.38629 1.38629 1.38629 0.05006 3.71259 3.71259 1.46634 0.26236 0.13876 2.04360 72 3.06297 2.24348 2.72626 0.24629 76 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 73 1.93493 1.21602 0.87857 1.93947 77 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 74 2.18135 0.84929 1.56753 1.38298 78 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 75 1.03364 1.95581 1.44620 1.31910 79 a - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 76 2.51669 1.90799 0.77692 1.16771 80 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 77 0.96559 2.06219 1.08340 1.87324 81 a - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 78 2.85390 1.79229 2.62619 0.35176 82 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 79 0.52221 2.55499 1.52861 2.18689 83 A - - - 1.38629 1.38629 1.38629 1.38629 0.31521 3.97775 1.37976 1.46634 0.26236 1.09861 0.40547 80 2.35289 0.33576 2.91407 1.99615 84 C - - - 1.38629 1.38629 1.38629 1.38629 0.05006 3.71259 3.71259 1.46634 0.26236 2.73674 0.06697 81 0.86374 1.38908 2.08112 1.58806 85 a - - - 1.38629 1.38629 1.38629 1.38629 0.05006 3.71259 3.71259 1.46634 0.26236 2.73674 0.06697 82 0.86374 1.38908 2.08112 1.58806 86 a - - - 1.38629 1.38629 1.38629 1.38629 0.20537 3.71259 1.82485 1.46634 0.26236 0.13876 2.04360 83 3.29926 0.21864 2.97295 2.22262 87 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04275 3.86686 3.86686 1.46634 0.26236 2.15228 0.12355 84 1.64595 1.01039 1.65103 1.38134 88 c - - ) 1.38629 1.38629 1.38629 1.38629 0.04275 3.86686 3.86686 1.46634 0.26236 2.15228 0.12355 85 1.03132 1.44046 1.39227 1.84431 89 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02160 3.84571 * 1.46634 0.26236 0.00000 * //