INFERNAL1/a [1.1.4 | Dec 2020] NAME ncr1241 ACC RF02451 DESC Bacillus sRNA ncr1241 STATES 198 NODES 54 CLEN 63 W 93 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 20:04:02 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 3.121094 CKSUM 3407072486 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 64.70 NC 39.60 EFP7GF -11.4211 0.71922 ECMLC 0.53031 -10.03559 1.32065 1600000 495019 0.002424 ECMGC 0.39261 -17.21809 -2.72180 1600000 118520 0.003375 ECMLI 0.49979 -8.39982 3.19875 1600000 395094 0.003037 ECMGI 0.44394 -11.76706 0.40773 1600000 88991 0.004495 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 93 131 -7.368 -7.576 -0.040 -5.990 IL 1 1 2 1 4 1 17 96 134 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 95 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 16 93 131 -8.359 -0.016 -7.013 0.450 0.242 -1.233 0.038 D 4 2 3 5 3 0 13 92 130 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 94 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 15 92 130 -8.726 -0.014 -7.044 0.087 0.293 -0.536 0.032 D 7 5 3 8 3 0 12 91 129 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 15 93 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 72 - U - - MR 9 8 3 11 3 1 14 92 129 -8.726 -0.014 -7.044 -2.236 -2.106 -2.999 1.778 D 10 8 3 11 3 0 11 89 127 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 14 92 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 71 - U - - MR 12 11 3 14 3 1 13 91 128 -8.726 -0.014 -7.044 -0.405 -1.241 -1.722 1.333 D 13 11 3 14 3 0 10 89 126 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 13 91 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 70 - U - - MR 15 14 3 17 3 1 12 90 127 -8.726 -0.014 -7.044 -2.236 -2.106 -2.999 1.778 D 16 14 3 17 3 0 9 88 125 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 90 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - U - - MR 18 17 3 20 3 1 11 89 126 -8.726 -0.014 -7.044 -2.236 -2.106 -2.999 1.778 D 19 17 3 20 3 0 9 87 125 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 89 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - U - - MR 21 20 3 23 3 1 10 88 125 -8.726 -0.014 -7.044 -2.236 -2.106 -2.999 1.778 D 22 20 3 23 3 0 9 86 124 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 88 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - U - - MR 24 23 3 26 2 1 9 87 124 -8.819 -0.003 -1.391 -0.665 -2.145 1.466 D 25 23 3 26 2 0 8 86 124 -4.432 -0.068 IR 26 26 3 26 2 1 9 87 125 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 28 108 0 8 86 123 [ BEGL 10 ] - - - - - - S 28 27 1 29 4 0 0 40 59 -0.038 -7.061 -6.468 -7.109 [ MATP 11 ] 3 28 u a - - MP 29 28 1 33 6 2 2 40 59 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -1.922 -2.010 -2.105 1.388 -2.033 -2.941 1.422 0.284 -2.158 1.119 -2.713 0.015 1.498 -2.240 -0.163 -0.188 ML 30 28 1 33 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 1 33 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 1 33 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 4 27 A U - - MP 35 34 6 39 6 2 2 38 57 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -4.547 -3.410 -4.481 3.663 -5.238 -6.399 -0.886 -4.471 -4.375 0.257 -4.958 -0.784 -1.297 -5.437 -2.823 -3.294 ML 36 34 6 39 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 26 a u - - MP 41 40 6 45 6 2 2 36 55 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -2.431 -2.322 -2.565 2.643 -2.616 -3.422 0.921 -2.884 -2.661 1.349 -3.198 -0.547 0.712 -0.936 -0.690 -0.658 ML 42 40 6 45 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 6 25 G C - - MP 47 46 6 51 6 2 2 34 53 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -5.507 -3.467 -5.721 -0.335 -6.298 -4.979 -1.472 -5.987 -4.791 3.778 -5.081 -1.207 -1.840 -4.959 -3.558 -4.587 ML 48 46 6 51 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 7 24 G C - - MP 53 52 6 57 4 2 2 32 51 -7.368 -7.576 -0.040 -5.990 -5.507 -3.467 -5.721 -0.335 -6.298 -4.979 -1.472 -5.987 -4.791 3.778 -5.081 -1.207 -1.840 -4.959 -3.558 -4.587 ML 54 52 6 57 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 56 52 6 57 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 57 57 5 57 4 1 1 34 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 8 - C - - - ML 59 58 6 61 3 1 1 30 49 -8.359 -0.016 -7.013 -2.703 1.806 -3.525 -1.932 D 60 58 6 61 3 0 0 29 48 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 9 - U - - - ML 62 61 3 64 3 1 1 29 48 -8.359 -0.016 -7.013 -2.236 -2.106 -2.999 1.778 D 63 61 3 64 3 0 0 28 47 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 10 - U - - - ML 65 64 3 67 3 1 1 28 46 -8.359 -0.016 -7.013 -2.236 -2.106 -2.999 1.778 D 66 64 3 67 3 0 0 27 46 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 11 - U - - - ML 68 67 3 70 3 1 1 26 45 -8.359 -0.016 -7.013 -2.236 -2.106 -2.999 1.778 D 69 67 3 70 3 0 0 25 44 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 12 - C - - - ML 71 70 3 73 3 1 1 25 44 -8.359 -0.016 -7.013 -2.703 1.806 -3.525 -1.932 D 72 70 3 73 3 0 0 24 43 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 13 - U - - - ML 74 73 3 76 3 1 1 24 43 -8.359 -0.016 -7.013 -2.236 -2.106 -2.999 1.778 D 75 73 3 76 3 0 0 23 42 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 14 - A - - - ML 77 76 3 79 3 1 1 23 42 -8.359 -0.016 -7.013 1.845 -3.168 -2.723 -2.792 D 78 76 3 79 3 0 0 22 41 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - G - - - ML 80 79 3 82 3 1 1 22 41 -8.359 -0.016 -7.013 -2.391 -3.719 1.855 -3.101 D 81 79 3 82 3 0 0 21 40 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - U - - - ML 83 82 3 85 3 1 1 21 39 -8.359 -0.016 -7.013 -2.236 -2.106 -2.999 1.778 D 84 82 3 85 3 0 0 20 39 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - A - - - ML 86 85 3 88 3 1 1 20 38 -8.359 -0.016 -7.013 1.845 -3.168 -2.723 -2.792 D 87 85 3 88 3 0 0 19 38 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - U - - - ML 89 88 3 91 3 1 1 18 37 -8.359 -0.016 -7.013 -2.236 -2.106 -2.999 1.778 D 90 88 3 91 3 0 0 18 37 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - U - - - ML 92 91 3 94 3 1 1 17 36 -8.359 -0.016 -7.013 -2.236 -2.106 -2.999 1.778 D 93 91 3 94 3 0 0 17 35 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - C - - - ML 95 94 3 97 3 1 1 16 34 -8.359 -0.016 -7.013 -2.703 1.806 -3.525 -1.932 D 96 94 3 97 3 0 0 16 34 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - C - - - ML 98 97 3 100 3 1 1 14 33 -8.359 -0.016 -7.013 -2.703 1.806 -3.525 -1.932 D 99 97 3 100 3 0 0 15 33 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 22 - C - - - ML 101 100 3 103 3 1 1 13 31 -8.359 -0.148 -3.407 -2.703 1.806 -3.525 -1.932 D 102 100 3 103 3 0 0 13 32 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 23 - C - - - ML 104 103 3 106 2 1 1 1 1 * 0.000 -2.389 1.761 -3.219 -1.675 D 105 103 3 106 2 0 0 0 0 * 0.000 IL 106 106 3 106 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 107 106 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 108 27 1 109 3 0 0 60 98 -8.359 -0.111 -3.815 IL 109 109 2 109 3 1 1 62 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - U - - - ML 110 109 2 112 3 1 1 60 98 -8.264 -0.017 -6.918 -2.055 -1.955 -2.812 1.748 D 111 109 2 112 3 0 0 58 96 -6.997 -0.712 -1.389 IL 112 112 3 112 3 1 1 61 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - a - - - ML 113 112 3 115 3 1 1 59 97 -3.234 -0.175 -7.013 0.478 -1.019 -0.010 0.164 D 114 112 3 115 3 0 0 56 94 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 60 98 -0.962 -1.128 -5.102 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - - - ML 116 115 3 118 3 1 1 57 95 -8.359 -0.114 -3.777 -0.304 -1.032 -0.657 1.047 D 117 115 3 118 3 0 0 55 93 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 58 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - - - ML 119 118 3 121 5 1 1 56 94 -2.733 -0.263 -7.171 -7.383 -8.275 -2.050 -1.950 -2.806 1.747 D 120 118 3 121 5 0 0 55 92 -5.492 -0.505 -4.753 -3.128 -3.040 IL 121 121 3 121 5 1 1 56 94 -2.979 -0.315 -4.658 -6.490 -5.764 0.000 0.000 0.000 0.000 [ MATP 38 ] 37 66 g c - - MP 122 121 3 126 6 2 2 55 93 -9.283 -9.222 -0.097 -7.998 -4.173 -8.673 -3.175 -2.265 -3.259 1.029 -3.676 -3.851 0.464 -3.650 -3.325 2.671 -3.689 1.518 0.200 -0.363 -1.367 -2.276 ML 123 121 3 126 6 1 1 53 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 53 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 50 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 54 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 54 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 38 65 G C - - MP 128 127 6 132 6 2 2 53 91 -9.205 -9.145 -0.020 -7.921 -8.201 -8.596 -5.189 -3.310 -5.343 -0.106 -5.859 -4.863 -1.112 -5.608 -4.607 3.729 -4.914 -1.030 -1.486 -4.757 -3.175 -4.213 ML 129 127 6 132 6 1 1 51 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 51 89 -7.737 -6.466 -0.742 -6.444 -1.578 -4.658 -0.392 -0.625 -1.035 1.071 D 131 127 6 132 6 0 0 48 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 52 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 52 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 39 64 A U - - MP 134 133 6 138 6 2 2 51 89 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -4.547 -3.410 -4.481 3.663 -5.238 -6.399 -0.886 -4.471 -4.375 0.257 -4.958 -0.784 -1.297 -5.437 -2.823 -3.294 ML 135 133 6 138 6 1 1 49 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 49 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 46 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 50 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 50 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 40 63 c g - - MP 140 139 6 144 6 2 2 49 87 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -4.129 -4.076 -3.959 -0.247 -2.788 -4.497 2.800 -3.530 -3.960 -0.051 -4.330 -2.011 2.454 -4.247 -0.441 -2.802 ML 141 139 6 144 6 1 1 47 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 47 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 44 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 48 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 48 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 41 62 g c - - MP 146 145 6 150 6 2 2 47 85 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -3.204 -2.462 -3.247 1.910 -3.456 -4.033 1.226 -3.558 -3.358 2.244 -3.801 1.135 0.482 -3.312 -1.124 -2.238 ML 147 145 6 150 6 1 1 45 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 45 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 42 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 46 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 46 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 42 61 c g - - MP 152 151 6 156 6 2 2 45 83 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -3.547 -3.244 -3.549 2.205 -2.893 -4.313 2.516 -3.419 -3.545 0.775 -4.012 -1.092 0.895 -3.775 -0.579 -2.455 ML 153 151 6 156 6 1 1 43 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 43 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 40 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 44 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 44 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 43 60 g c - - MP 158 157 6 162 6 2 2 43 81 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -3.439 -2.566 -3.420 1.824 -3.666 -4.162 0.749 -3.755 -3.589 2.700 -4.002 -0.288 1.028 -3.441 -1.221 -2.386 ML 159 157 6 162 6 1 1 41 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 41 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 38 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 42 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 42 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 44 59 a u - - MP 164 163 6 168 6 2 2 41 79 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -2.535 -2.414 -2.670 2.264 -2.525 -3.496 1.659 -2.886 -2.718 1.231 -0.161 -0.586 0.942 -2.818 -0.488 -1.791 ML 165 163 6 168 6 1 1 39 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 39 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 36 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 40 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 40 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 45 58 c g - - MP 170 169 6 174 6 2 2 39 77 -9.283 -9.222 -0.019 -7.998 -8.278 -8.673 -2.946 -2.893 -3.036 1.864 -2.519 -3.826 2.052 -3.038 -3.056 0.922 -3.570 -0.994 1.568 -3.191 0.622 -2.035 ML 171 169 6 174 6 1 1 37 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 37 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 34 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 38 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 38 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 46 57 c g - - MP 176 175 6 180 4 2 2 37 75 -7.368 -2.236 -0.385 -5.990 -3.322 -2.876 -3.371 0.781 -2.952 -4.170 2.438 -3.377 -3.392 1.993 -3.878 0.098 1.048 -3.492 -0.582 -2.268 ML 177 175 6 180 4 1 1 35 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 4 1 1 34 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 6 180 4 0 0 33 71 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 37 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 38 76 -0.701 -1.446 -5.817 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - u - - - ML 182 181 6 184 3 1 1 17 36 -8.359 -0.283 -2.512 -0.405 0.327 -1.462 0.702 D 183 181 6 184 3 0 0 17 35 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - a - - - ML 185 184 3 187 3 1 1 16 35 -8.094 -0.225 -2.832 0.814 -0.967 -0.523 0.049 D 186 184 3 187 3 0 0 15 33 -7.776 -3.289 -0.163 IL 187 187 3 187 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - u - - - ML 188 187 3 190 3 1 1 15 33 -7.891 -0.022 -6.545 0.289 -0.166 -0.982 0.465 D 189 187 3 190 3 0 0 13 32 -8.299 -0.895 -1.124 IL 190 190 3 190 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - u - - - ML 191 190 3 193 3 1 1 13 31 -8.192 -0.018 -6.846 -0.073 -0.505 -0.191 0.555 D 192 190 3 193 3 0 0 12 31 -7.393 -2.906 -0.217 IL 193 193 3 193 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - g - - - ML 194 193 3 196 2 1 1 1 1 * 0.000 0.175 -1.155 0.625 -0.184 D 195 193 3 196 2 0 0 0 0 * 0.000 IL 196 196 3 196 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 197 196 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME ncr1241 ACC RF02451 DESC Bacillus sRNA ncr1241 LENG 63 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 20:04:02 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 8 EFFN 5.019531 CKSUM 3407072486 STATS LOCAL MSV -7.8108 0.71922 STATS LOCAL VITERBI -8.9137 0.71922 STATS LOCAL FORWARD -3.7872 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.68440 1.39042 1.66374 0.97805 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 0.00000 * 1 1.04764 1.14240 2.42765 1.41907 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 2 1.35371 1.10599 1.77332 1.42268 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 3 1.55402 1.28586 1.57602 1.18616 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 4 0.10941 4.00027 2.74293 3.86572 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 5 0.68284 2.23400 1.72428 1.56341 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 6 3.22299 4.15159 0.07484 4.10238 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 7 3.22135 4.14900 0.07502 4.09887 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 8 3.94560 0.06948 4.45411 3.32014 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 9 3.52811 3.34925 4.06950 0.08508 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 10 3.52811 3.34925 4.06950 0.08508 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 11 3.52811 3.34925 4.06950 0.08508 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 12 3.94560 0.06948 4.45411 3.32014 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 13 3.52811 3.34925 4.06950 0.08508 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 14 0.05701 4.18878 3.83555 3.98108 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 15 3.60967 4.58570 0.05491 4.12421 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 16 3.52811 3.34925 4.06950 0.08508 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 17 0.05701 4.18878 3.83555 3.98108 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 18 3.52811 3.34925 4.06950 0.08508 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 19 3.52811 3.34925 4.06950 0.08508 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 20 3.94560 0.06948 4.45411 3.32014 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 21 3.94560 0.06948 4.45411 3.32014 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 22 3.94560 0.06948 4.45411 3.32014 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.13373 4.38017 2.18350 1.46634 0.26236 1.09861 0.40547 23 3.73849 0.08478 4.27263 3.13376 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02823 4.27467 4.27467 1.46634 0.26236 0.20077 1.70429 24 4.22792 0.09168 4.00890 2.90293 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 25 4.22839 0.09166 4.00915 2.90301 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 26 2.28382 1.65107 2.03271 0.55290 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 27 4.04795 3.13069 3.78832 0.08750 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 28 1.52042 1.88904 1.51596 0.89022 28 u - - > 1.38629 1.38629 1.38629 1.38629 0.10345 4.38017 2.45620 1.46634 0.26236 1.09861 0.40547 29 3.39380 3.23336 3.93279 0.09717 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.02740 4.30411 4.30411 1.46634 0.26236 0.25623 1.48705 30 1.03082 2.24021 1.35830 1.27385 30 a - - - 1.38629 1.38629 1.38629 1.38629 0.15603 2.02537 4.38017 1.12458 0.39273 1.09861 0.40547 31 1.69404 2.30714 1.87064 0.57509 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.10591 4.38017 2.43074 1.46634 0.26236 1.09861 0.40547 32 3.38951 3.22968 3.92842 0.09758 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.24319 1.59785 4.30172 0.12890 2.11248 0.25053 1.50682 33 2.06060 2.68508 0.41571 1.93422 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.16413 4.38017 1.97438 1.46634 0.26236 1.09861 0.40547 34 3.02870 3.88935 0.09514 3.82053 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02909 4.24512 4.24512 1.46634 0.26236 0.16584 1.87849 35 0.11204 3.96222 2.73313 3.81871 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 36 3.10101 0.74210 2.88898 0.85979 40 c - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 37 1.26740 1.91150 0.76657 2.24455 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 38 1.00795 0.88398 2.36611 2.05532 42 c - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 39 1.33992 2.40864 0.71537 1.83768 43 g - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 40 0.87277 1.54830 1.47925 1.95343 44 a - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 41 1.25846 1.27688 2.05085 1.17643 45 u - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 42 2.22428 0.91844 1.10001 1.83355 46 c - - < 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 43 1.78335 1.07688 2.63277 0.86896 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.24704 4.38017 1.57811 1.46634 0.26236 1.09861 0.40547 44 0.76162 2.19153 1.78652 1.37120 48 a - - _ 1.38629 1.38629 1.38629 1.38629 0.20797 4.16469 1.75890 1.46634 0.26236 2.91661 0.05564 45 1.17100 1.48019 2.17415 1.05370 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03754 3.99426 3.99426 1.46634 0.26236 0.55015 0.86006 46 1.48275 1.77642 1.48209 0.97662 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02909 4.24512 4.24512 1.46634 0.26236 0.16584 1.87849 47 1.29792 2.36572 0.85008 1.58164 51 g - - _ 1.38629 1.38629 1.38629 1.38629 0.28968 1.43141 4.38017 1.14893 0.38123 1.09861 0.40547 48 2.06262 1.32439 0.84878 1.72049 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 49 1.58082 2.21921 0.97438 1.17741 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 50 2.18498 2.11032 1.13510 0.80983 59 u - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 51 1.98333 0.79427 2.22351 1.19650 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 52 2.29792 2.56360 0.82605 0.95521 61 g - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 53 2.46960 1.17225 1.78742 0.82480 62 u - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 54 0.93565 3.03013 0.69199 2.83389 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 55 3.77658 3.07212 3.64442 0.10022 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 56 3.61404 0.17716 3.59145 2.22697 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 57 2.75966 0.69829 2.49099 1.03164 66 c - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 58 2.76657 1.94123 3.29368 0.27908 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 59 3.52811 3.34925 4.06950 0.08508 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 60 3.52811 3.34925 4.06950 0.08508 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 61 3.52811 3.34925 4.06950 0.08508 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 62 1.77474 2.55794 2.92739 0.35743 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.02537 4.38017 4.38017 1.46634 0.26236 1.09861 0.40547 63 3.52811 3.34925 4.06950 0.08508 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.01276 4.36757 * 1.46634 0.26236 0.00000 * //