INFERNAL1/a [1.1.4 | Dec 2020] NAME SpF61_sRNA ACC RF02441 DESC Streptococcus sRNA SpF61 STATES 178 NODES 48 CLEN 58 W 73 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 20:03:26 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.217773 CKSUM 1641133430 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 82.10 NC 49.50 EFP7GF -8.7676 0.71964 ECMLC 0.56507 -5.44274 5.80139 1600000 689590 0.001740 ECMGC 0.45820 -13.30216 0.09165 1600000 185085 0.002161 ECMLI 0.60137 -2.74399 7.15422 1600000 461639 0.002599 ECMGI 0.49678 -8.73928 2.90282 1600000 129964 0.003078 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 92 -7.061 -7.268 -0.049 -5.683 IL 1 1 2 1 4 1 15 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 15 73 92 -8.070 -0.019 -6.724 1.761 -2.586 -2.197 -2.150 D 4 2 3 5 3 0 9 72 91 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 14 72 91 -8.070 -0.019 -6.724 1.761 -2.586 -2.197 -2.150 D 7 5 3 8 3 0 9 71 90 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 13 71 90 -8.070 -0.019 -6.724 -1.684 -1.646 -2.427 1.670 D 10 8 3 11 3 0 8 70 89 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 12 70 89 -8.070 -0.019 -6.724 1.761 -2.586 -2.197 -2.150 D 13 11 3 14 3 0 7 69 88 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 11 69 88 -8.070 -0.019 -6.724 1.761 -2.586 -2.197 -2.150 D 16 14 3 17 3 0 6 68 87 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 11 68 87 -8.454 -0.017 -6.771 1.761 -2.586 -2.197 -2.150 D 19 17 3 20 3 0 6 66 86 -5.620 -0.734 -1.403 IL 20 20 3 20 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 58 - g - - MR 21 20 3 23 3 1 10 67 86 -8.454 -0.017 -6.771 0.374 -1.601 0.910 -1.013 D 22 20 3 23 3 0 4 65 84 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 9 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 57 - A - - MR 24 23 3 26 3 1 9 66 85 -8.454 -0.017 -6.771 1.761 -2.586 -2.197 -2.150 D 25 23 3 26 3 0 3 64 83 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 8 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - U - - MR 27 26 3 29 3 1 8 65 84 -8.454 -0.017 -6.771 -0.823 0.133 -1.591 1.004 D 28 26 3 29 3 0 3 63 82 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - A - - MR 30 29 3 32 3 1 8 64 83 -8.454 -0.017 -6.771 1.761 -2.586 -2.197 -2.150 D 31 29 3 32 3 0 2 62 81 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 6 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 54 - g - - MR 33 32 3 35 3 1 7 63 82 -8.454 -0.017 -6.771 -0.517 -1.207 0.844 0.101 D 34 32 3 35 3 0 1 61 80 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - U - - MR 36 35 3 38 3 1 6 62 81 -8.454 -0.017 -6.771 -1.684 -1.646 -2.427 1.670 D 37 35 3 38 3 0 1 60 79 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - g - - MR 39 38 3 41 3 1 6 61 80 -8.454 -0.017 -6.771 0.374 -1.601 0.910 -1.013 D 40 38 3 41 3 0 0 59 78 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - a - - MR 42 41 3 44 3 1 5 60 79 -8.454 -0.017 -6.771 0.884 -0.993 -1.123 0.254 D 43 41 3 44 3 0 0 58 77 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 4 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - U - - MR 45 44 3 47 3 1 5 59 78 -8.454 -0.017 -6.771 -0.833 0.087 -1.599 1.033 D 46 44 3 47 3 0 0 57 76 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 49 - A - - MR 48 47 3 50 3 1 4 58 77 -8.454 -0.017 -6.771 1.761 -2.586 -2.197 -2.150 D 49 47 3 50 3 0 0 56 75 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 3 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 48 - A - - MR 51 50 3 53 3 1 3 57 76 -8.454 -0.017 -6.771 1.761 -2.586 -2.197 -2.150 D 52 50 3 53 3 0 0 55 74 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 47 - U - - MR 54 53 3 56 3 1 3 56 75 -8.454 -0.017 -6.771 -1.684 -1.646 -2.427 1.670 D 55 53 3 56 3 0 0 54 73 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 2 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 46 - A - - MR 57 56 3 59 5 1 3 55 74 -7.186 -0.037 -7.002 -7.214 -8.105 1.761 -2.586 -2.197 -2.150 D 58 56 3 59 5 0 0 53 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 7 45 G C - - MP 60 59 3 64 6 2 4 54 73 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -3.973 -2.686 -4.001 0.811 -4.706 -4.583 -0.144 -4.354 -3.906 3.211 -4.311 1.249 -0.423 -3.990 -2.120 -2.890 ML 61 59 3 64 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 8 44 A U - - MP 66 65 6 70 6 2 4 52 71 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -3.986 -2.969 -3.989 3.444 -4.426 -5.508 -0.113 -4.018 -3.874 0.868 -4.431 -0.414 -0.529 -4.662 -2.053 -2.812 ML 67 65 6 70 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 9 43 c g - - MP 72 71 6 76 6 2 3 50 69 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -3.959 -3.975 -3.742 -0.293 -2.561 -4.210 2.533 -3.325 -3.780 -0.101 -4.111 -2.064 0.970 -4.056 2.430 -2.656 ML 73 71 6 76 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 10 42 A U - - MP 78 77 6 82 6 2 3 48 67 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -3.986 -2.969 -3.989 3.444 -4.426 -5.508 -0.113 -4.018 -3.874 0.868 -4.431 -0.414 -0.529 -4.662 -2.053 -2.812 ML 79 77 6 82 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 11 41 U G - - MP 84 83 6 88 6 2 3 46 65 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -4.312 -4.242 -3.964 -0.555 -2.655 -4.352 1.637 -3.448 -4.006 -0.399 -4.275 -2.236 0.758 -4.376 3.135 -2.866 ML 85 83 6 88 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 12 40 G C - - MP 90 89 6 94 6 2 3 44 63 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -4.953 -3.195 -5.074 0.058 -5.529 -4.775 -0.841 -5.330 -4.463 3.685 -4.785 -0.903 -1.221 -4.605 -2.890 -3.948 ML 91 89 6 94 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 13 39 G U - - MP 96 95 6 100 6 2 3 42 61 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -3.753 -2.482 -3.931 1.045 -4.759 -5.489 -0.339 -3.937 -3.559 1.170 -4.088 3.214 -0.694 -4.663 -2.281 -2.605 ML 97 95 6 100 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 14 38 A U - - MP 102 101 6 106 6 2 2 40 59 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -3.986 -2.969 -3.989 3.444 -4.426 -5.508 -0.113 -4.018 -3.874 0.868 -4.431 -0.414 -0.529 -4.662 -2.053 -2.812 ML 103 101 6 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 15 37 G U - - MP 108 107 6 112 4 2 2 38 57 -7.061 -7.268 -0.049 -5.683 -3.753 -2.482 -3.931 1.045 -4.759 -5.489 -0.339 -3.937 -3.559 1.170 -4.088 3.214 -0.694 -4.663 -2.281 -2.605 ML 109 107 6 112 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 16 - G - - - ML 114 113 6 116 3 1 1 35 54 -8.454 -0.017 -6.771 -1.806 -3.059 1.770 -2.447 D 115 113 6 116 3 0 0 34 53 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 36 - G - - MR 117 116 3 119 5 1 1 34 53 -7.186 -0.037 -7.002 -7.214 -8.105 -1.806 -3.059 1.770 -2.447 D 118 116 3 119 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 17 35 U G - - MP 120 119 3 124 4 2 2 33 52 -6.969 -8.214 -0.075 -4.668 -4.312 -4.242 -3.964 -0.555 -2.655 -4.352 1.637 -3.448 -4.006 -0.399 -4.275 -2.236 0.758 -4.376 3.135 -2.866 ML 121 119 3 124 4 1 1 32 51 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 4 1 1 32 51 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 123 119 3 124 4 0 0 30 49 -12.737 -14.007 -2.036 -0.404 IL 124 124 5 124 4 1 1 32 51 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 34 - g - - MR 126 125 6 128 3 1 1 31 50 -8.454 -0.017 -6.771 -0.517 -1.207 0.844 0.101 D 127 125 6 128 3 0 0 29 48 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 33 - U - - MR 129 128 3 131 3 1 1 30 49 -8.454 -0.017 -6.771 -1.684 -1.646 -2.427 1.670 D 130 128 3 131 3 0 0 28 47 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 32 - G - - MR 132 131 3 134 3 1 1 29 48 -8.454 -0.017 -6.771 -1.806 -3.059 1.770 -2.447 D 133 131 3 134 3 0 0 27 46 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 31 - U - - MR 135 134 3 137 3 1 1 28 47 -8.454 -0.017 -6.771 -1.684 -1.646 -2.427 1.670 D 136 134 3 137 3 0 0 26 45 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 30 - U - - MR 138 137 3 140 5 1 1 27 46 -7.186 -0.037 -7.002 -7.214 -8.105 -1.684 -1.646 -2.427 1.670 D 139 137 3 140 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 18 29 G C - - MP 141 140 3 145 6 2 2 26 45 -9.152 -9.091 -0.020 -7.868 -8.147 -8.542 -4.953 -3.195 -5.074 0.058 -5.529 -4.775 -0.841 -5.330 -4.463 3.685 -4.785 -0.903 -1.221 -4.605 -2.890 -3.948 ML 142 140 3 145 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 19 28 C G - - MP 147 146 6 151 4 2 2 24 43 -7.061 -7.268 -0.049 -5.683 -4.783 -4.709 -4.433 -0.921 -3.102 -4.814 3.617 -3.935 -4.491 -0.712 -4.726 -2.660 0.388 -4.837 -0.814 -3.323 ML 148 146 6 151 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 20 - U - - - ML 153 152 6 155 3 1 1 21 40 -8.070 -0.019 -6.724 -1.684 -1.646 -2.427 1.670 D 154 152 6 155 3 0 0 20 39 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 21 - U - - - ML 156 155 3 158 3 1 1 20 39 -8.070 -0.019 -6.724 -1.684 -1.646 -2.427 1.670 D 157 155 3 158 3 0 0 19 38 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 22 - G - - - ML 159 158 3 161 3 1 1 19 37 -8.070 -0.019 -6.724 -1.806 -3.059 1.770 -2.447 D 160 158 3 161 3 0 0 18 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 23 - A - - - ML 162 161 3 164 3 1 1 17 36 -8.070 -0.019 -6.724 1.761 -2.586 -2.197 -2.150 D 163 161 3 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 24 - A - - - ML 165 164 3 167 3 1 1 16 35 -8.070 -0.019 -6.724 1.761 -2.586 -2.197 -2.150 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 25 - c - - - ML 168 167 3 170 3 1 1 15 33 -8.070 -0.019 -6.724 -0.859 0.835 -1.669 0.433 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 26 - U - - - ML 171 170 3 173 3 1 1 13 31 -8.070 -0.019 -6.724 -1.684 -1.646 -2.427 1.670 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 27 - U - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -1.684 -1.646 -2.427 1.670 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SpF61_sRNA ACC RF02441 DESC Streptococcus sRNA SpF61 LENG 58 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 20:03:27 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 2.592773 CKSUM 1641133430 STATS LOCAL MSV -8.2787 0.71964 STATS LOCAL VITERBI -8.5862 0.71964 STATS LOCAL FORWARD -3.6353 0.71964 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23951 1.95115 1.35944 1.16617 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.13641 3.35729 3.06993 3.07341 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.13641 3.35729 3.06993 3.07341 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.72118 2.66635 3.24285 0.19159 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.13641 3.35729 3.06993 3.07341 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.13641 3.35729 3.06993 3.07341 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.13641 3.35729 3.06993 3.07341 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.10890 2.84015 0.28375 2.69919 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.29636 2.91801 1.93639 2.84357 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.85750 0.96156 2.65011 0.71406 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.29638 2.91796 1.93638 2.84349 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.04568 1.63503 2.85157 0.35705 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.66028 3.35792 0.15289 3.29568 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 1.97342 3.01777 0.27986 2.87848 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.29666 2.91670 1.93612 2.84172 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 1.97315 3.01718 0.28000 2.87772 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.82070 3.71452 0.12920 3.28948 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.04524 1.63503 2.85136 0.35710 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.65805 3.35514 0.15335 3.29185 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.31476 0.21294 3.10511 2.20155 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.72118 2.66635 3.24285 0.19159 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.72118 2.66635 3.24285 0.19159 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.82070 3.71452 0.12920 3.28948 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.13641 3.35729 3.06993 3.07341 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.13641 3.35729 3.06993 3.07341 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.06502 0.76620 2.63745 1.08807 25 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.72118 2.66635 3.24285 0.19159 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.72118 2.66635 3.24285 0.19159 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.48365 3.27801 0.18271 3.08241 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.51190 0.18000 3.20409 2.36135 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.72118 2.66635 3.24285 0.19159 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.72118 2.66636 3.24285 0.19159 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.82070 3.71452 0.12920 3.28948 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.72118 2.66635 3.24285 0.19159 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 1.80670 2.29053 0.75683 1.32636 34 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.19443 3.03725 0.24925 2.79323 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.82070 3.71452 0.12920 3.28948 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.08332 2.00590 2.81314 0.27491 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.06516 2.24378 2.72712 0.24604 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 3.08498 2.00601 2.81386 0.27474 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 3.49225 0.18156 3.19523 2.35766 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.19059 3.03119 0.25071 2.78644 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.07039 2.24449 2.72920 0.24546 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.03776 2.80998 0.30543 2.62183 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.07595 2.24524 2.73140 0.24485 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.94039 0.50074 2.65850 1.30557 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 0.13641 3.35729 3.06993 3.07341 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 2.72118 2.66635 3.24285 0.19159 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 0.13641 3.35729 3.06993 3.07341 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 0.13641 3.35729 3.06993 3.07341 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.04320 1.31327 2.58021 0.64305 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 0.74902 2.12293 2.21609 1.20914 51 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 1.12556 2.58573 0.71853 2.18286 52 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.72118 2.66635 3.24285 0.19159 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 1.80670 2.29053 0.75683 1.32636 54 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 0.13641 3.35729 3.06993 3.07341 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 2.03561 1.27835 2.57446 0.66416 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 0.13641 3.35729 3.06993 3.07341 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 1.12556 2.58573 0.71853 2.18286 58 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //