INFERNAL1/a [1.1.5 | Sep 2023] NAME SpF59_sRNA ACC RF02440 DESC Streptococcus sRNA SpF59 (ldcC RNA) STATES 166 NODES 45 CLEN 54 W 117 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 05:47:50 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02440/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 410 EFFN 13.829117 CKSUM 1930186072 NULL 0.000 0.000 0.000 0.000 GA 37.20 TC 38.30 NC 36.50 EFP7GF -19.1654 0.71914 ECMLC 0.52544 -10.48831 1.50811 1600000 655706 0.001830 ECMGC 0.37398 -21.87421 -6.41628 1600000 129635 0.003086 ECMLI 0.52515 -9.17435 2.30981 1600000 499327 0.002403 ECMGI 0.37583 -18.26571 -3.67111 1600000 96427 0.004148 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 117 186 -8.901 -10.147 -0.019 -6.600 IL 1 1 2 1 4 1 14 118 187 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 118 187 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 104 - A - - MR 3 2 3 5 3 1 18 117 186 -10.330 -0.005 -8.648 1.558 -1.881 -0.813 -2.217 D 4 2 3 5 3 0 10 115 184 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 15 117 186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 103 - G - - MR 6 5 3 8 3 1 17 116 185 -10.330 -0.005 -8.648 -4.235 -4.233 1.949 -4.900 D 7 5 3 8 3 0 9 114 183 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 116 185 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 102 - C - - MR 9 8 3 11 3 1 16 115 184 -10.330 -0.005 -8.648 -5.001 1.949 -5.482 -3.532 D 10 8 3 11 3 0 8 113 182 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 115 184 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 101 - C - - MR 12 11 3 14 3 1 16 114 183 -10.330 -0.005 -8.648 -3.880 1.941 -5.091 -4.008 D 13 11 3 14 3 0 8 112 181 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 114 183 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 100 - G - - MR 15 14 3 17 3 1 15 113 182 -10.330 -0.005 -8.648 -4.448 -5.886 1.955 -4.068 D 16 14 3 17 3 0 7 111 180 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 113 182 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 99 - U - - MR 18 17 3 20 3 1 14 112 181 -10.330 -0.005 -8.648 -1.388 -2.069 -2.973 1.701 D 19 17 3 20 3 0 6 110 179 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 112 181 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 98 - a - - MR 21 20 3 23 3 1 14 111 180 -10.330 -0.005 -8.648 0.862 0.282 -1.944 -0.501 D 22 20 3 23 3 0 5 109 178 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 111 180 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 97 - A - - MR 24 23 3 26 5 1 13 110 179 -6.108 -0.029 -8.811 -9.023 -9.915 1.518 -3.049 -0.203 -2.767 D 25 23 3 26 5 0 5 108 177 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 9 110 179 -2.587 -0.429 -6.098 -4.266 -5.371 0.000 0.000 0.000 0.000 [ MATP 9 ] 1 95 u a - - MP 27 26 3 31 6 2 14 109 178 -10.303 -10.242 -0.009 -9.018 -9.298 -9.693 -1.771 -2.397 -0.622 0.656 -1.611 -3.237 1.299 -2.722 -1.998 1.325 -2.813 -1.065 2.426 -2.418 -0.084 -1.457 ML 28 26 3 31 6 1 7 107 176 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 6 106 175 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 3 103 172 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 8 108 177 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 8 108 177 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 2 94 G C - - MP 33 32 6 37 6 2 12 107 176 -10.303 -10.242 -0.011 -8.435 -9.298 -9.693 -7.418 -4.754 -8.143 -0.326 -8.997 -6.131 -3.703 -8.287 -6.107 3.880 -6.362 -2.232 -3.994 -6.413 -5.947 -6.959 ML 34 32 6 37 6 1 6 105 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 6 105 174 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 3 101 170 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 7 106 175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 8 106 175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 3 93 A U - - MP 39 38 6 43 6 2 11 105 174 -10.301 -10.240 -0.009 -9.017 -9.297 -9.692 -5.569 -3.023 -3.862 3.574 -5.259 -6.718 1.164 -5.424 -5.417 -0.903 -5.922 -2.194 -0.762 -6.107 -2.878 -4.339 ML 40 38 6 43 6 1 6 103 172 -6.292 -6.638 -1.251 -1.047 -6.488 -4.017 0.491 -0.471 -0.194 -0.002 MR 41 38 6 43 6 1 6 103 172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 3 99 168 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 7 104 173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 104 173 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 4 92 C G - - MP 45 44 6 49 6 2 9 103 172 -10.303 -10.242 -0.011 -9.018 -8.392 -9.693 -6.847 -7.074 -6.204 -3.261 -4.577 -6.374 3.811 -5.486 -6.298 -3.203 -6.433 -5.356 -0.071 -6.706 -0.732 -5.096 ML 46 44 6 49 6 1 5 101 170 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 5 101 170 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 3 98 167 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 6 102 171 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 7 102 171 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 91 C G - - MP 51 50 6 55 4 2 8 101 170 -7.903 -7.487 -0.055 -5.179 -7.150 -7.400 -6.423 -3.616 -4.779 -6.541 3.887 -5.767 -6.591 -3.572 -6.605 -5.737 -0.887 -7.001 -1.553 -5.391 ML 52 50 6 55 4 1 4 100 169 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 5 100 169 -4.215 -12.642 -0.357 -2.599 0.375 -0.520 0.071 -0.066 D 54 50 6 55 4 0 2 98 167 -12.737 -14.007 -2.036 -0.404 IL 55 55 5 55 4 1 5 100 169 -2.859 -4.362 -0.591 -2.740 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 6 100 169 -2.008 -0.517 -4.247 0.000 0.000 0.000 0.000 [ MATR 14 ] - 89 - G - - MR 57 56 6 59 3 1 7 99 168 -6.165 -0.026 -8.009 -0.993 -2.294 1.659 -2.887 D 58 56 6 59 3 0 2 97 166 -7.029 -0.800 -1.259 IR 59 59 3 59 3 1 5 99 168 -2.147 -0.461 -4.385 0.000 0.000 0.000 0.000 [ MATR 15 ] - 87 - C - - MR 60 59 3 62 3 1 7 98 167 -10.328 -0.005 -8.646 -4.308 1.848 -5.021 -1.650 D 61 59 3 62 3 0 1 96 165 -6.451 -1.455 -0.681 IR 62 62 3 62 3 1 5 98 167 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 86 - C - - MR 63 62 3 65 3 1 6 97 166 -10.330 -0.005 -8.648 -3.737 1.660 -0.628 -3.087 D 64 62 3 65 3 0 0 95 164 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 4 97 166 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 85 - G - - MR 66 65 3 68 3 1 6 96 165 -10.330 -0.005 -8.648 -4.477 -5.931 1.957 -4.179 D 67 65 3 68 3 0 0 94 163 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 96 165 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 84 - A - - MR 69 68 3 71 3 1 5 95 164 -10.330 -0.005 -8.648 1.697 -2.631 -1.214 -2.592 D 70 68 3 71 3 0 0 93 162 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 3 95 164 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 83 - C - - MR 72 71 3 74 3 1 5 94 163 -7.525 -0.011 -8.648 -3.384 1.887 -3.728 -2.932 D 73 71 3 74 3 0 0 92 161 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 3 94 163 -2.009 -0.517 -4.248 0.000 0.000 0.000 0.000 [ MATR 20 ] - 81 - A - - MR 75 74 3 77 3 1 4 93 162 -10.330 -0.005 -8.648 1.872 -3.825 -3.281 -2.582 D 76 74 3 77 3 0 0 91 160 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 2 93 162 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 80 - G - - MR 78 77 3 80 3 1 3 92 161 -10.330 -0.014 -6.842 -4.729 -6.337 1.974 -5.465 D 79 77 3 80 3 0 0 90 159 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 92 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 79 - G - - MR 81 80 3 83 3 1 2 91 160 -10.321 -0.005 -8.639 -4.719 -6.326 1.973 -5.455 D 82 80 3 83 3 0 0 89 158 -6.658 -1.836 -0.494 IR 83 83 3 83 3 1 1 91 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 78 - C - - MR 84 83 3 86 3 1 1 90 159 -10.321 -0.046 -5.045 -5.309 1.967 -5.801 -4.410 D 85 83 3 86 3 0 0 88 157 -6.658 -1.836 -0.494 IR 86 86 3 86 3 1 1 90 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 77 - A - - MR 87 86 3 89 3 1 2 89 158 -10.281 -0.012 -7.040 1.858 -4.374 -1.871 -4.219 D 88 86 3 89 3 0 0 87 156 -7.466 -1.502 -0.641 IR 89 89 3 89 3 1 1 89 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 76 - U - - MR 90 89 3 92 3 1 1 88 157 -10.292 -0.073 -4.364 -0.738 -0.890 -1.624 1.343 D 91 89 3 92 3 0 0 87 155 -7.285 -0.635 -1.515 IR 92 92 3 92 3 1 1 88 157 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 75 - A - - MR 93 92 3 95 3 1 1 87 156 -10.264 -0.016 -6.573 1.760 -3.234 -2.189 -1.800 D 94 92 3 95 3 0 0 85 154 -7.693 -1.227 -0.816 IR 95 95 3 95 3 1 1 87 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 74 - C - - MR 96 95 3 98 3 1 1 86 155 -10.286 -0.005 -8.603 -2.308 1.627 -2.671 -0.859 D 97 95 3 98 3 0 0 85 154 -7.389 -0.649 -1.490 IR 98 98 3 98 3 1 1 86 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 73 - C - - MR 99 98 3 101 3 1 1 85 154 -6.236 -0.103 -4.167 -4.409 1.916 -3.209 -3.812 D 100 98 3 101 3 0 0 83 152 -6.475 -1.414 -0.705 IR 101 101 3 101 3 1 1 85 154 -2.140 -0.464 -4.378 0.000 0.000 0.000 0.000 [ MATR 29 ] - 71 - G - - MR 102 101 3 104 3 1 1 84 153 -10.252 -0.016 -6.619 -1.883 -0.862 1.547 -1.962 D 103 101 3 104 3 0 0 83 152 -7.844 -0.400 -2.074 IR 104 104 3 104 3 1 1 84 153 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 70 - G - - MR 105 104 3 107 3 1 1 83 152 -10.320 -0.010 -7.370 -2.172 -3.401 1.818 -2.658 D 106 104 3 107 3 0 0 81 150 -6.693 -1.871 -0.480 IR 107 107 3 107 3 1 1 83 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 69 - A - - MR 108 107 3 110 3 1 1 82 151 -10.315 -0.005 -8.632 1.724 -2.301 -2.318 -1.776 D 109 107 3 110 3 0 0 80 149 -6.822 -1.239 -0.817 IR 110 110 3 110 3 1 1 82 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 68 - A - - MR 111 110 3 113 3 1 1 81 150 -10.325 -0.018 -6.447 1.562 -2.427 -0.913 -1.595 D 112 110 3 113 3 0 0 79 148 -6.547 -1.725 -0.542 IR 113 113 3 113 3 1 1 81 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 67 - u - - MR 114 113 3 116 5 1 1 80 149 -3.575 -0.167 -6.944 -8.001 -6.217 -0.661 0.064 -1.536 0.984 D 115 113 3 116 5 0 0 78 147 -5.649 -0.547 -3.275 -4.706 -2.701 IR 116 116 3 116 5 1 1 80 149 -2.827 -0.401 -6.870 -3.665 -6.144 0.000 0.000 0.000 0.000 [ MATP 34 ] 7 63 a u - - MP 117 116 3 121 6 2 2 79 148 -10.270 -10.209 -0.009 -8.986 -9.266 -9.661 -1.187 -0.874 -1.095 2.396 -2.072 -2.985 0.922 -2.153 -1.674 1.442 -2.526 -0.606 0.811 -2.453 -0.579 -1.584 ML 118 116 3 121 6 1 1 77 146 -6.434 -6.780 -1.221 -1.046 -6.630 -4.159 0.419 -0.344 -0.217 0.021 MR 119 116 3 121 6 1 1 77 146 -7.275 -6.004 -1.748 -5.983 -0.713 -4.196 0.701 -0.613 -0.447 -0.018 D 120 116 3 121 6 0 0 71 140 -9.498 -8.196 -3.993 -4.675 -4.693 -0.227 IL 121 121 5 121 6 1 1 78 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 78 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 8 62 C G - - MP 123 122 6 127 6 2 2 77 146 -10.276 -6.247 -0.033 -8.992 -7.891 -8.520 -3.838 -4.302 -3.960 0.159 -3.551 -5.385 3.188 -4.178 -4.442 0.320 -4.961 -1.988 1.650 -3.368 -0.996 -3.225 ML 124 122 6 127 6 1 1 75 144 -6.323 -6.669 -1.209 -1.078 -6.519 -4.048 0.551 -0.511 -0.218 -0.039 MR 125 122 6 127 6 1 1 75 144 -7.228 -2.936 -1.674 -5.935 -1.069 -4.149 0.621 -0.560 -0.406 0.042 D 126 122 6 127 6 0 0 69 138 -9.498 -8.196 -3.993 -4.675 -4.693 -0.227 IL 127 127 5 127 6 1 1 76 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 76 145 -2.713 -0.388 -6.224 -4.392 -5.498 0.000 0.000 0.000 0.000 [ MATP 36 ] 9 60 u a - - MP 129 128 6 133 6 2 2 75 144 -10.283 -10.222 -0.025 -8.258 -8.596 -6.700 -2.290 -2.488 -2.350 0.817 -2.237 -2.977 2.053 -2.813 -2.794 0.249 -3.362 -1.072 2.441 -2.889 0.271 -1.506 ML 130 128 6 133 6 1 1 73 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 73 142 -7.082 -5.811 -1.447 -5.789 -0.923 -4.002 0.227 -0.363 -0.350 0.343 D 132 128 6 133 6 0 0 67 136 -9.557 -8.255 -4.052 -4.734 -4.752 -0.217 IL 133 133 5 133 6 1 1 74 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 74 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 10 59 c g - - MP 135 134 6 139 6 2 2 73 142 -10.271 -10.211 -0.116 -7.207 -8.225 -3.939 -2.912 -3.187 -2.540 0.938 -2.162 -3.832 2.369 -3.375 -3.062 0.635 -3.545 -1.508 2.252 -3.393 -0.076 -2.338 ML 136 134 6 139 6 1 1 71 140 -6.306 -6.652 -1.232 -1.061 -6.502 -4.031 0.378 -0.516 0.061 -0.063 MR 137 134 6 139 6 1 1 70 139 -7.024 -5.753 -1.553 -5.731 -0.865 -3.945 0.491 -0.471 -0.194 -0.002 D 138 134 6 139 6 0 0 64 133 -9.850 -8.549 -4.346 -5.028 -5.045 -0.174 IL 139 139 5 139 6 1 1 73 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 72 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 11 58 c g - - MP 141 140 6 145 6 2 2 71 140 -10.169 -10.109 -0.293 -8.885 -8.363 -2.501 -1.770 -2.233 -2.140 1.257 -2.052 -2.179 2.178 -2.653 -1.833 0.847 -2.957 -0.608 1.761 -2.462 -0.086 -1.495 ML 142 140 6 145 6 1 1 69 138 -6.443 -6.789 -1.413 -0.893 -6.639 -4.168 0.713 -0.622 -0.331 -0.126 MR 143 140 6 145 6 1 1 68 137 -7.050 -5.779 -1.688 -5.758 -0.891 -3.233 0.363 -0.531 0.100 -0.075 D 144 140 6 145 6 0 0 62 131 -11.109 -9.807 -5.604 -6.286 -6.304 -0.070 IL 145 145 5 145 6 1 1 71 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 71 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 12 57 c g - - MP 147 146 6 151 4 2 2 70 139 -0.849 -3.446 -1.532 -7.100 -1.802 -1.994 -2.206 1.006 -2.086 -3.243 2.252 -2.673 -2.445 0.994 -2.830 -0.809 1.643 -2.535 0.441 -1.206 ML 148 146 6 151 4 1 1 64 133 -2.755 -4.061 -0.627 -2.790 0.674 -0.594 -0.299 -0.105 MR 149 146 6 151 4 1 1 62 131 -3.853 -3.889 -1.757 -0.817 0.511 -0.484 -0.200 -0.015 D 150 146 6 151 4 0 0 61 130 -7.863 -1.526 -0.792 -3.815 IL 151 151 5 151 4 1 1 70 139 -0.515 -1.830 -5.817 -9.555 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 65 134 -0.385 -2.107 -8.794 0.000 0.000 0.000 0.000 [ MATL 40 ] 27 - u - - - ML 153 152 6 155 3 1 1 15 33 -10.013 -0.005 -8.667 0.004 -0.455 -0.002 0.344 D 154 152 6 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 28 - u - - - ML 156 155 3 158 3 1 1 13 32 -10.013 -0.005 -8.667 0.215 -0.242 -0.895 0.542 D 157 155 3 158 3 0 0 14 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 29 - u - - - ML 159 158 3 161 3 1 1 12 30 -10.013 -0.161 -3.260 0.325 -0.295 -0.725 0.409 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 30 - a - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 0.490 -0.748 -0.522 0.382 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SpF59_sRNA ACC RF02440 DESC Streptococcus sRNA SpF59 (ldcC RNA) LENG 54 MAXL 132 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 05:47:50 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02440/CM NSEQ 410 EFFN 51.415787 CKSUM 1930186072 STATS LOCAL MSV -7.8197 0.71914 STATS LOCAL VITERBI -8.1296 0.71914 STATS LOCAL FORWARD -3.6671 0.71914 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38410 1.25637 1.22253 1.77030 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 0.00000 * 1 2.02031 1.89463 1.60341 0.66203 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 2 2.99525 6.24925 0.05543 6.23080 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 3 0.17782 2.03860 4.67920 3.75444 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 4 5.84779 0.08607 5.81066 2.56931 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00629 6.15466 5.48579 1.46634 0.26236 1.09861 0.40547 5 5.87048 0.05009 5.82666 3.14452 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03298 5.42921 3.57366 0.79016 0.60472 0.70536 0.68108 6 0.57267 2.38045 1.39250 2.35368 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.00437 6.12845 6.12845 1.46634 0.26236 2.01703 0.14277 7 2.90858 0.37831 2.86756 1.59164 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.01039 6.13067 4.80804 1.46634 0.26236 0.90917 0.51560 8 2.18051 1.20330 2.81903 0.64027 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01822 6.13491 4.14189 1.46634 0.26236 1.49172 0.25487 9 2.07011 0.97953 2.40716 0.89583 10 u - - < 1.38629 1.38629 1.38629 1.38629 0.10627 6.12491 2.31641 1.46634 0.26236 2.31507 0.10398 10 1.71134 0.98518 1.93163 1.20034 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.31456 6.02510 1.31873 1.46634 0.26236 4.09808 0.01674 11 1.88529 0.97986 1.90220 1.12821 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.96213 0.48673 5.71714 1.25566 0.33531 0.01184 4.44191 12 1.46712 1.72645 1.30426 1.13905 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 13 1.24824 1.54018 2.14727 0.96274 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 14 1.14887 1.58289 1.97446 1.08238 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.07003 6.15466 2.72557 1.46634 0.26236 1.09861 0.40547 15 0.99754 2.03984 1.77912 1.10148 30 a - - _ 1.38629 1.38629 1.38629 1.38629 1.23884 0.64606 1.68108 1.64364 0.21477 1.34119 0.30318 16 1.45079 1.99649 0.76109 1.81618 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.08345 5.90682 2.55950 1.46634 0.26236 0.38325 1.14457 17 1.28682 2.10600 0.90081 1.63021 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.00704 6.02009 5.38467 1.46634 0.26236 0.27851 1.41434 18 0.99327 2.51633 0.86130 2.06935 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.00439 6.12441 6.12441 1.46634 0.26236 0.81127 0.58751 19 0.79736 2.93369 1.00431 2.04032 60 a - - > 1.38629 1.38629 1.38629 1.38629 0.03285 3.58844 5.36576 0.14942 1.97479 1.65174 0.21284 20 1.66122 2.86162 0.36243 2.86587 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.00843 6.13834 5.07666 1.46634 0.26236 2.36308 0.09886 21 2.09824 1.41771 2.05777 0.67861 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.11744 2.35727 4.12714 0.13435 2.07372 0.17413 1.83377 22 2.06276 1.30363 2.73095 0.62326 67 U - - - 1.38629 1.38629 1.38629 1.38629 0.00432 6.14089 6.14089 1.46634 0.26236 0.51803 0.90559 23 0.24538 3.67767 2.02956 2.79828 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.01222 6.15079 4.60345 1.46634 0.26236 1.57222 0.23267 24 0.14073 3.34475 3.29360 2.83216 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.00431 6.14288 6.14288 1.46634 0.26236 1.10618 0.40170 25 3.24223 4.20687 0.08760 3.50980 70 G - - - 1.38629 1.38629 1.38629 1.38629 0.06520 6.14677 2.79715 1.46634 0.26236 0.35461 1.20880 26 3.43812 1.86177 0.26180 3.15090 71 G - - - 1.38629 1.38629 1.38629 1.38629 0.02147 4.08522 5.42033 0.24949 1.51050 0.06784 2.72431 27 5.57280 0.03863 3.54725 5.24109 73 C - - - 1.38629 1.38629 1.38629 1.38629 0.03644 6.15261 3.39156 1.46634 0.26236 1.37685 0.29085 28 3.50747 0.19891 3.39330 2.14723 74 C - - - 1.38629 1.38629 1.38629 1.38629 0.02974 6.12058 3.60804 1.46634 0.26236 1.34218 0.30283 29 0.12508 4.77348 3.12255 2.73222 75 A - - - 1.38629 1.38629 1.38629 1.38629 0.03546 6.10412 3.42323 1.46634 0.26236 0.07938 2.57294 30 2.06531 2.11520 2.75302 0.37269 76 U - - - 1.38629 1.38629 1.38629 1.38629 0.01862 6.12536 4.11923 1.46634 0.26236 1.55336 0.23767 31 0.07355 5.87476 2.73459 5.75192 77 A - - - 1.38629 1.38629 1.38629 1.38629 0.00442 6.11674 6.11674 1.46634 0.26236 0.29383 1.36808 32 6.40420 0.00608 6.72690 5.74047 78 C - - - 1.38629 1.38629 1.38629 1.38629 0.00429 6.14779 6.14779 1.46634 0.26236 1.82852 0.17513 33 5.82637 7.04736 0.00558 6.35317 79 G - - - 1.38629 1.38629 1.38629 1.38629 0.00429 6.14779 6.14779 1.46634 0.26236 0.38758 1.13537 34 5.83282 7.05398 0.00554 6.35966 80 G - - - 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 35 0.06103 5.15858 4.15780 3.27517 81 A - - - 1.38629 1.38629 1.38629 1.38629 0.00941 4.92792 6.15466 0.50948 0.91831 1.09861 0.40547 36 4.07476 0.05255 4.15010 3.99344 83 C - - - 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 37 0.16639 3.63795 2.26189 3.77980 84 A - - - 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 38 5.78281 6.95144 0.01527 4.49930 85 G - - - 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 39 5.73512 0.23604 1.59909 5.30964 86 C - - - 1.38629 1.38629 1.38629 1.38629 0.00572 6.15466 5.63275 1.46634 0.26236 1.09861 0.40547 40 5.85828 0.08388 6.20679 2.58250 87 C - - - 1.38629 1.38629 1.38629 1.38629 0.03793 4.11270 3.87005 0.24230 1.53627 0.78243 0.61119 41 2.17653 3.13605 0.18378 4.51037 89 G - - - 1.38629 1.38629 1.38629 1.38629 0.00955 4.91436 6.13578 0.51190 0.91469 0.18559 1.77560 42 3.64244 5.88186 0.03329 5.58131 91 G - - > 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 43 3.07970 5.97424 0.05333 5.67999 92 G - - > 1.38629 1.38629 1.38629 1.38629 0.00566 6.15466 5.64828 1.46634 0.26236 1.09861 0.40547 44 3.83918 4.39571 2.00056 0.18525 93 U - - > 1.38629 1.38629 1.38629 1.38629 0.00426 6.15326 6.15326 1.46634 0.26236 0.79088 0.60412 45 6.25556 0.06216 6.14675 2.87878 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 46 0.70808 1.69129 1.45938 2.39966 95 a - - > 1.38629 1.38629 1.38629 1.38629 0.01846 4.12466 6.15466 0.24470 1.52758 1.09861 0.40547 47 0.29760 4.16760 1.49503 4.03572 97 A - - : 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 48 0.71152 1.09209 3.39393 1.96602 98 a - - : 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 49 2.41084 3.17108 3.94254 0.16381 99 U - - : 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 50 5.77669 6.93950 0.01660 4.39030 100 G - - : 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 51 4.37094 0.02035 5.92721 5.33163 101 C - - : 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 52 6.01891 0.01829 6.27978 4.28195 102 C - - : 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 53 5.74220 4.42594 0.01728 6.23508 103 G - - : 1.38629 1.38629 1.38629 1.38629 0.00426 6.15466 6.15466 1.46634 0.26236 1.09861 0.40547 54 0.25394 2.90268 1.94211 3.65016 104 A - - : 1.38629 1.38629 1.38629 1.38629 0.00213 6.15253 * 1.46634 0.26236 0.00000 * //