# STOCKHOLM 1.0
#=GF ID SpF51_sRNA
#=GF AC RF02438
#=GF DE Streptococcus sRNA SpF51
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 39.9
#=GF TC 60.0
#=GF SE Eberhardt R
#=GF SS Predicted; mfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.11 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 22807675
#=GF RT Control of virulence by small RNAs in Streptococcus pneumoniae.
#=GF RA Mann B, van Opijnen T, Wang J, Obert C, Wang YD, Carter R, McGoldrick DJ,
#=GF RA Ridout G, Camilli A, Tuomanen EI, Rosch JW
#=GF RL PLoS Pathog. 2012;8:e1002788.
#=GF WK Streptococcus_sRNA
#=GF SQ 8

AFUF01000014.1/63606-63650         AGUGUAGUCUCCUAAAUACAUUUAGCCCUUAUUAU-----AGGGCUUUUU
AEEN01000008.1/43457-43413         AGUGUAGCCUCCUAAAUGCACUUAGCCCUUAUUAA-----AGGGCUUUUU
AFUT01000007.1/45851-45807         AGUAUAGUCUCCUAAAUACACAAAGCCCUUGUUAA-----AGGGCUUUUU
ABAE01000013.1/42152-42108         AGUUUAGUCUCCUAAAUACAAUUGGCCCUUAUUAU-----AGGGCUUUUU
ACRL01000036.1/44169-44128         AGUGUAGUCUCCUAAAUGCACGUAGCCCUUAU--------AGGGCUUUUU
#=GR ACRL01000036.1/44169-44128 PP *****************************876........**********
AEDY01000036.1/35148-35191         AGUAUAGUCUCCUAAAUACACUAAGCCCU------AUACAAGGGCUUUUU
#=GR AEDY01000036.1/35148-35191 PP ****************************9......45555**********
AEVD01000011.1/84984-85028         AGUAUAGUCUCUUAAAUACACAAAGCCCUUU----AA-CAAGGGCUUUUU
#=GR AEVD01000011.1/84984-85028 PP *****************************84....55.55**********
FM211187.1/2193462-2193506         AGUAUAGUCUCCUAAAUGCACUUAGCCCUUAUUAU-----AGGGCUUUUU
#=GC SS_cons                       :<<<<__________>>>>::::<<<<<<______.....>>>>>>::::
#=GC RF                            AGuaUAGUCUCCUAAAuaCACuuAGCCCUUAUUAu.....AGGGCUUUUU
//
