INFERNAL1/a [1.1.5 | Sep 2023] NAME SpF10_sRNA ACC RF02427 DESC Streptococcus sRNA SpF10 STATES 180 NODES 46 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 15:47:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02427/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.808594 CKSUM 2835952215 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 86.60 NC 43.20 EFP7GF -5.8688 0.72792 ECMLC 0.65766 -5.54871 3.65390 1600000 510067 0.002353 ECMGC 0.42071 -14.50328 -0.70684 1600000 132682 0.003015 ECMLI 0.61272 -3.94014 5.01921 1600000 290588 0.004130 ECMGI 0.44963 -9.87834 2.16241 1600000 89802 0.004454 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 73 92 -6.898 -7.105 -0.055 -5.519 IL 1 1 2 1 4 1 15 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 16 73 93 -7.918 -0.021 -6.572 -1.628 1.592 -2.448 -1.065 D 4 2 3 5 3 0 9 71 91 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 15 72 91 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 7 5 3 8 3 0 8 70 90 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 5 1 15 71 90 -7.053 -0.040 -6.868 -7.080 -7.972 -1.481 -2.685 1.700 -2.071 D 10 8 3 11 5 0 8 69 89 -4.959 -0.803 -4.221 -2.596 -2.508 IL 11 11 3 11 5 1 12 71 91 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 57 A U - - MP 12 11 3 16 6 2 16 70 89 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -3.717 -2.768 -3.741 3.281 -4.042 -5.098 0.253 -3.788 -3.636 1.159 -4.180 -0.256 -0.165 -4.298 -1.688 -2.579 ML 13 11 3 16 6 1 10 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 9 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 5 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 11 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 11 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 56 c g - - MP 18 17 6 22 6 2 15 68 87 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -2.649 -2.644 -2.729 0.556 -2.239 -3.430 1.692 -2.766 -2.762 0.724 1.210 -0.964 1.154 -2.914 1.638 -1.832 ML 19 17 6 22 6 1 9 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 9 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 5 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 11 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 11 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 55 A U - - MP 24 23 6 28 6 2 15 66 85 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -3.717 -2.768 -3.741 3.281 -4.042 -5.098 0.253 -3.788 -3.636 1.159 -4.180 -0.256 -0.165 -4.298 -1.688 -2.579 ML 25 23 6 28 6 1 9 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 9 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 5 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 10 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 10 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 54 G C - - MP 30 29 6 34 6 2 14 64 83 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -4.654 -3.052 -4.746 0.258 -5.109 -4.659 -0.496 -4.982 -4.270 3.617 -4.613 -0.748 -0.883 -4.410 -2.528 -3.624 ML 31 29 6 34 6 1 9 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 8 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 5 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 10 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 10 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 53 A U - - MP 36 35 6 40 6 2 12 62 81 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -3.717 -2.768 -3.741 3.281 -4.042 -5.098 0.253 -3.788 -3.636 1.159 -4.180 -0.256 -0.165 -4.298 -1.688 -2.579 ML 37 35 6 40 6 1 8 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 8 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 4 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 9 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 9 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 52 A U - - MP 42 41 6 46 6 2 10 60 79 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -3.717 -2.768 -3.741 3.281 -4.042 -5.098 0.253 -3.788 -3.636 1.159 -4.180 -0.256 -0.165 -4.298 -1.688 -2.579 ML 43 41 6 46 6 1 7 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 7 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 4 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 8 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 8 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 51 C G - - MP 48 47 6 52 4 2 8 58 77 -6.898 -7.105 -0.055 -5.519 -4.459 -4.356 -4.164 -0.597 -2.902 -4.587 3.522 -3.703 -4.210 -0.343 -4.481 -2.302 0.622 -4.534 -0.606 -3.053 ML 49 47 6 52 4 1 7 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 5 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 4 56 76 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 8 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 7 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 54 53 6 56 3 1 7 55 75 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 55 53 6 56 3 0 4 54 74 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 7 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 57 56 3 59 3 1 6 54 74 -7.918 -0.021 -6.572 -1.400 -1.411 -2.129 1.593 D 58 56 3 59 3 0 3 53 72 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 6 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 60 59 3 62 3 1 5 53 73 -7.918 -0.436 -1.961 -1.400 -1.411 -2.129 1.593 D 61 59 3 62 3 0 3 52 71 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 6 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 63 62 3 65 3 1 5 52 72 -7.510 -0.028 -6.164 -0.637 -1.679 1.360 -1.068 D 64 62 3 65 3 0 3 50 70 -7.854 -3.367 -0.154 IL 65 65 3 65 3 1 5 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 66 65 3 68 3 1 4 51 71 -7.510 -0.028 -6.164 -0.732 1.180 -1.497 -0.361 D 67 65 3 68 3 0 3 50 69 -7.854 -0.349 -2.246 IL 68 68 3 68 3 1 4 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 69 68 3 71 2 1 3 50 69 -8.301 -0.005 1.698 -2.278 -1.919 -1.811 D 70 68 3 71 2 0 2 49 68 -8.445 -0.004 IL 71 71 3 71 2 1 3 51 70 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 72 71 3 73 117 0 2 49 68 [ BEGL 18 ] - - - - - - S 73 72 1 74 4 0 0 28 47 -0.045 -6.808 -6.216 -6.856 [ MATP 19 ] 17 30 U A - - MP 74 73 1 78 6 2 2 28 47 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -4.095 -3.917 -3.944 -0.219 -2.907 -4.517 1.420 -3.596 -3.950 0.049 -4.328 -1.819 3.281 -4.250 -0.585 -2.783 ML 75 73 1 78 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 1 78 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 1 78 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 29 U A - - MP 80 79 6 84 6 2 2 26 45 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -4.095 -3.917 -3.944 -0.219 -2.907 -4.517 1.420 -3.596 -3.950 0.049 -4.328 -1.819 3.281 -4.250 -0.585 -2.783 ML 81 79 6 84 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 28 C G - - MP 86 85 6 90 6 2 2 24 43 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -4.459 -4.356 -4.164 -0.597 -2.902 -4.587 3.522 -3.703 -4.210 -0.343 -4.481 -2.302 0.622 -4.534 -0.606 -3.053 ML 87 85 6 90 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 27 A U - - MP 92 91 6 96 4 2 2 22 41 -6.898 -7.105 -0.055 -5.519 -3.717 -2.768 -3.741 3.281 -4.042 -5.098 0.253 -3.788 -3.636 1.159 -4.180 -0.256 -0.165 -4.298 -1.688 -2.579 ML 93 91 6 96 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 96 96 5 96 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 98 97 6 100 3 1 1 19 37 -7.918 -0.021 -6.572 -1.481 -2.685 1.700 -2.071 D 99 97 6 100 3 0 0 18 37 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - A - - - ML 101 100 3 103 3 1 1 18 36 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 102 100 3 103 3 0 0 17 36 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - A - - - ML 104 103 3 106 3 1 1 16 35 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 105 103 3 106 3 0 0 16 34 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - U - - - ML 107 106 3 109 3 1 1 15 33 -7.918 -0.021 -6.572 -1.400 -1.411 -2.129 1.593 D 108 106 3 109 3 0 0 15 33 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - A - - - ML 110 109 3 112 3 1 1 13 32 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 111 109 3 112 3 0 0 13 32 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - A - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 1.698 -2.278 -1.919 -1.811 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 117 72 1 118 3 0 0 34 53 -7.918 -0.021 -6.572 IL 118 118 2 118 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 119 118 2 121 3 1 1 34 53 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 120 118 2 121 3 0 0 33 52 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 122 121 3 124 3 1 1 33 52 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 123 121 3 124 3 0 0 32 51 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 125 124 3 127 3 1 1 32 51 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 126 124 3 127 3 0 0 31 50 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - C - - - ML 128 127 3 130 5 1 1 31 49 -7.053 -0.040 -6.868 -7.080 -7.972 -1.628 1.592 -2.448 -1.065 D 129 127 3 130 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 130 130 3 130 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 35 50 G C - - MP 131 130 3 135 6 2 2 30 48 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -4.654 -3.052 -4.746 0.258 -5.109 -4.659 -0.496 -4.982 -4.270 3.617 -4.613 -0.748 -0.883 -4.410 -2.528 -3.624 ML 132 130 3 135 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 3 135 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 3 135 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 36 49 C G - - MP 137 136 6 141 6 2 2 28 46 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -4.459 -4.356 -4.164 -0.597 -2.902 -4.587 3.522 -3.703 -4.210 -0.343 -4.481 -2.302 0.622 -4.534 -0.606 -3.053 ML 138 136 6 141 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 48 A U - - MP 143 142 6 147 6 2 2 26 44 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -3.717 -2.768 -3.741 3.281 -4.042 -5.098 0.253 -3.788 -3.636 1.159 -4.180 -0.256 -0.165 -4.298 -1.688 -2.579 ML 144 142 6 147 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 47 u g - - MP 149 148 6 153 6 2 2 24 42 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -3.997 -3.914 -3.721 -0.258 -2.508 -4.161 1.776 -3.272 -3.760 -0.049 -4.062 -1.918 0.941 -4.091 2.944 -2.636 ML 150 148 6 153 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 39 46 C G - - MP 155 154 6 159 6 2 2 22 40 -9.088 -9.028 -0.021 -7.804 -8.084 -8.479 -4.459 -4.356 -4.164 -0.597 -2.902 -4.587 3.522 -3.703 -4.210 -0.343 -4.481 -2.302 0.622 -4.534 -0.606 -3.053 ML 156 154 6 159 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 45 A U - - MP 161 160 6 165 4 2 2 20 38 -6.898 -7.105 -0.055 -5.519 -3.717 -2.768 -3.741 3.281 -4.042 -5.098 0.253 -3.788 -3.636 1.159 -4.180 -0.256 -0.165 -4.298 -1.688 -2.579 ML 162 160 6 165 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - - - ML 167 166 6 169 3 1 1 16 35 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 168 166 6 169 3 0 0 16 34 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 170 169 3 172 3 1 1 15 33 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 171 169 3 172 3 0 0 15 33 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 173 172 3 175 3 1 1 13 32 -7.918 -0.021 -6.572 1.698 -2.278 -1.919 -1.811 D 174 172 3 175 3 0 0 13 32 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - A - - - ML 176 175 3 178 2 1 1 1 1 * 0.000 1.698 -2.278 -1.919 -1.811 D 177 175 3 178 2 0 0 0 0 * 0.000 IL 178 178 3 178 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 179 178 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SpF10_sRNA ACC RF02427 DESC Streptococcus sRNA SpF10 LENG 57 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 15:47:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02427/CM NSEQ 2 EFFN 1.761719 CKSUM 2835952215 STATS LOCAL MSV -7.9131 0.72792 STATS LOCAL VITERBI -9.1338 0.72792 STATS LOCAL FORWARD -2.8505 0.72792 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.07614 1.62546 1.47394 1.45565 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.48415 0.29187 3.05129 2.10013 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.21551 2.93915 2.69319 2.61325 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.38519 3.21540 0.21523 2.78978 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.48759 2.42833 1.58689 2.37355 4 A - - ( 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.07382 1.46419 1.24913 1.03205 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.48762 2.42825 1.58688 2.37341 6 A - - ( 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.39549 2.92633 0.22476 2.87225 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.48777 2.42788 1.58686 2.37283 8 A - - ( 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.48784 2.42771 1.58685 2.37255 9 A - - ( 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.89766 0.32642 2.63319 1.88721 10 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.21551 2.93915 2.69319 2.61325 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.33322 2.34541 2.83728 0.28952 12 U - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.33322 2.34541 2.83728 0.28952 13 U - - , 1.38629 1.38629 1.38629 1.38629 0.33074 3.73767 1.35557 1.46634 0.26236 1.09861 0.40547 14 1.81149 2.53000 0.45365 2.10682 14 G - - , 1.38629 1.38629 1.38629 1.38629 0.06418 3.47111 3.47111 1.46634 0.26236 2.55160 0.08116 15 1.87734 0.58033 2.40613 1.62392 15 C - - , 1.38629 1.38629 1.38629 1.38629 0.06418 3.47111 3.47111 1.46634 0.26236 0.16950 1.85845 16 0.21551 2.93915 2.69319 2.61325 16 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.66483 1.67803 2.37165 0.43029 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.66203 1.67801 2.37061 0.43074 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.90255 0.32568 2.63526 1.88798 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.48759 2.42832 1.58689 2.37353 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.38519 3.21540 0.21523 2.78978 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.21551 2.93915 2.69319 2.61325 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.21551 2.93915 2.69319 2.61325 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.33322 2.34541 2.83728 0.28952 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.21551 2.93915 2.69319 2.61325 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.21551 2.93915 2.69319 2.61325 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.60220 1.84730 2.24254 0.41243 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.16060 2.79895 0.28302 2.65401 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.49164 2.54514 1.51468 2.40755 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.49236 2.54295 1.51469 2.40456 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.21551 2.93915 2.69319 2.61325 31 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.21551 2.93915 2.69319 2.61325 32 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.21551 2.93915 2.69319 2.61325 33 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.48415 0.29187 3.05129 2.10013 34 C - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.39637 2.92722 0.22451 2.87353 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.90148 0.32584 2.63481 1.88781 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.48759 2.42832 1.58689 2.37353 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.66653 1.43895 2.41740 0.50389 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.89921 0.32618 2.63385 1.88745 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.48783 2.42774 1.58685 2.37261 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.21551 2.93915 2.69319 2.61325 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.21551 2.93915 2.69319 2.61325 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.21551 2.93915 2.69319 2.61325 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.21551 2.93915 2.69319 2.61325 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.60261 1.84732 2.24267 0.41236 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.16152 2.80005 0.28266 2.65544 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 1.94074 2.58924 0.36819 2.41529 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.60304 1.84735 2.24281 0.41228 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.16107 2.79951 0.28284 2.65473 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.08005 0.26440 2.75354 2.09820 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.16105 2.79948 0.28285 2.65470 51 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.60244 1.84731 2.24262 0.41239 52 U - - ) 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.60273 1.84733 2.24271 0.41234 53 U - - ) 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.08580 0.26369 2.75586 2.09931 54 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.60254 1.84732 2.24265 0.41237 55 U - - ) 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 1.74158 2.03518 0.61741 1.86587 56 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.59841 1.84706 2.24134 0.41311 57 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //