# STOCKHOLM 1.0
#=GF ID SpF03_sRNA
#=GF AC RF02426
#=GF DE Streptococcus sRNA SpF03
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 49.6
#=GF TC 94.9
#=GF SE Eberhardt R
#=GF SS Predicted; mfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 34.51 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 22807675
#=GF RT Control of virulence by small RNAs in Streptococcus pneumoniae.
#=GF RA Mann B, van Opijnen T, Wang J, Obert C, Wang YD, Carter R, McGoldrick DJ,
#=GF RA Ridout G, Camilli A, Tuomanen EI, Rosch JW
#=GF RL PLoS Pathog. 2012;8:e1002788.
#=GF WK Streptococcus_sRNA
#=GF SQ 3

AGPS01000003.1/108824-108929 AUUGCUCGAAUUUAUCGGA--CUUUUC--UAUAAAGAAUAGUUUGGACUUGAACUGUAUCUAAAAAC-AGAGGUUGGUAGAUUAUCAGCCUCUUUCUUGUCGUU-GAAAAGA
FQ312029.1/118922-119029     AUUGCUCGAAUUUAUCGGACUUUUUUC--UAUAAAGAAUAGUUUGGACUUGAACUGUAUCUAAAAAC-AGAGGUUGGUCGAUUAUCAGCCUCUUUCUUGUCGUU-GAAAUUA
AGNY01000003.1/93001-93109   AUUGCUCGAAUUUAUAGGA--CUUUUUUCUAUAAAGAAUAGUUUGGACUUGAAAUGUAUUUAAAAACAAGAGGUUGGUAGAUUAUCAGCCUCUUUCUUGUCGUUGAAAAAG-
#=GC SS_cons                 :::::<<<<_____>>>>:..((((((..,,,,,<<<<<<<<<<______>>>>>>>->>>,,,,,,.<<<<<<<<<<<___>>>>>>>>>>>,,,,,,,,,,,.)))))):
#=GC RF                      AUUGCuCgaAUUUAucGgA..cuuuuc..UAUAAagaauaguuuGGACUUgaacuguAucuAAAAAC.aGaGGuuGguaGAUuauCagCCuCuUUCUUGUCGUU.gaaaagA
//
