INFERNAL1/a [1.1.4 | Dec 2020] NAME Spd-sr37 ACC RF02419 DESC Streptococcus sRNA Spd-sr37 STATES 205 NODES 57 CLEN 67 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 20:02:14 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 25 EFFN 2.749634 CKSUM 3785478701 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 46.30 NC 36.70 EFP7GF -11.0918 0.71905 ECMLC 0.54538 -9.87327 1.60986 1600000 629565 0.001906 ECMGC 0.41677 -15.67182 -1.87324 1600000 125785 0.003180 ECMLI 0.50578 -8.36537 2.89734 1600000 357351 0.003358 ECMGI 0.41588 -11.67469 1.05780 1600000 79753 0.005015 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -7.250 -7.457 -0.109 -4.054 IL 1 1 2 1 4 1 21 86 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 3 - C - - - ML 3 2 3 5 3 1 20 82 102 -8.187 -0.018 -6.841 -0.966 1.358 -2.032 -0.554 D 4 2 3 5 3 0 16 81 101 -6.716 -0.925 -1.108 IL 5 5 3 5 3 1 20 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 4 - A - - - ML 6 5 3 8 3 1 20 81 101 -8.247 -0.017 -6.901 1.654 -2.127 -1.975 -1.436 D 7 5 3 8 3 0 14 80 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 5 - A - - - ML 9 8 3 11 3 1 19 80 100 -8.247 -0.017 -6.901 1.817 -2.944 -2.520 -2.545 D 10 8 3 11 3 0 13 79 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 6 - U - - - ML 12 11 3 14 3 1 18 79 99 -8.247 -0.017 -6.901 -0.656 -1.140 -1.440 1.347 D 13 11 3 14 3 0 13 78 98 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 7 - A - - - ML 15 14 3 17 3 1 17 78 98 -8.247 -0.057 -4.823 1.285 -1.133 -1.389 -0.463 D 16 14 3 17 3 0 12 77 97 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 17 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 8 - a - - - ML 18 17 3 20 3 1 17 77 97 -8.207 -0.017 -6.861 0.562 -1.004 0.344 -0.404 D 19 17 3 20 3 0 11 76 96 -6.556 -1.086 -0.948 IL 20 20 3 20 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 9 - u - - - ML 21 20 3 23 3 1 16 76 96 -8.247 -0.017 -6.901 -0.066 0.062 -1.012 0.589 D 22 20 3 23 3 0 9 75 95 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 10 - c - - - ML 24 23 3 26 3 1 15 75 95 -8.247 -0.017 -6.901 0.146 0.232 -0.725 0.156 D 25 23 3 26 3 0 8 74 94 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - A - - - ML 27 26 3 29 3 1 14 74 94 -8.247 -0.017 -6.901 1.680 -2.352 -1.565 -1.933 D 28 26 3 29 3 0 8 73 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 13 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - U - - - ML 30 29 3 32 3 1 13 73 93 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 31 29 3 32 3 0 7 72 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 12 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 13 - G - - - ML 33 32 3 35 3 1 13 72 92 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 34 32 3 35 3 0 7 71 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 11 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 14 - A - - - ML 36 35 3 38 3 1 12 71 91 -8.247 -0.017 -6.901 1.817 -2.944 -2.520 -2.545 D 37 35 3 38 3 0 6 70 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 10 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - U - - - ML 39 38 3 41 3 1 11 70 89 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 40 38 3 41 3 0 5 69 88 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 10 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 16 - G - - - ML 42 41 3 44 3 1 11 69 88 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 43 41 3 44 3 0 5 68 87 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 9 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 17 - G - - - ML 45 44 3 47 3 1 10 68 87 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 46 44 3 47 3 0 4 66 86 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 8 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 18 - U - - - ML 48 47 3 50 3 1 9 67 86 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 49 47 3 50 3 0 4 65 85 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 8 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 19 - C - - - ML 51 50 3 53 3 1 9 66 85 -8.247 -0.017 -6.901 -2.435 1.768 -3.264 -1.712 D 52 50 3 53 3 0 3 64 84 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 7 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 20 - A - - - ML 54 53 3 56 5 1 8 65 84 -7.343 -0.160 -3.482 -7.370 -8.262 1.817 -2.944 -2.520 -2.545 D 55 53 3 56 5 0 3 63 83 -4.959 -0.803 -4.221 -2.596 -2.508 IL 56 56 3 56 5 1 6 65 84 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 21 69 A U - - MP 57 56 3 61 6 2 10 64 83 -9.168 -9.107 -0.020 -7.884 -8.163 -8.558 -4.055 -3.021 -4.052 3.478 -4.525 -5.615 -0.207 -4.076 -3.935 0.794 -4.496 -0.457 -0.623 -4.757 -2.146 -2.871 ML 58 56 3 61 6 1 5 62 82 -6.941 -7.287 -0.930 -1.271 -7.137 -4.666 1.132 -1.013 -0.759 -0.468 MR 59 56 3 61 6 1 4 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 6 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 22 68 A U - - MP 63 62 6 67 6 2 9 62 81 -9.213 -9.152 -0.020 -7.929 -8.209 -8.604 -4.252 -3.174 -4.228 3.563 -4.809 -5.925 -0.477 -4.238 -4.111 0.580 -4.681 -0.583 -0.892 -5.029 -2.416 -3.041 ML 64 62 6 67 6 1 4 60 80 -6.477 -6.823 -1.029 -1.232 -6.673 -4.202 0.750 -0.649 -0.364 -0.147 MR 65 62 6 67 6 1 4 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 5 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 5 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 23 67 G U - - MP 69 68 6 73 6 2 9 60 79 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -3.981 -2.663 -4.171 0.882 -5.175 -5.941 -0.723 -4.156 -3.757 0.862 -4.304 3.382 -1.066 -5.037 -2.661 -2.810 ML 70 68 6 73 6 1 4 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 4 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 5 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 5 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 24 66 C G - - MP 75 74 6 79 6 2 8 58 77 -9.230 -9.170 -0.033 -6.248 -8.226 -8.621 -3.906 -3.939 -3.934 -0.533 -3.269 -2.700 3.555 -2.434 -3.989 -0.391 -4.406 -2.177 0.248 -4.153 -1.153 -3.000 ML 76 74 6 79 6 1 3 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 3 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 4 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 4 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 25 65 u a - - MP 81 80 6 85 6 2 7 56 75 -9.217 -9.156 -0.020 -7.933 -8.213 -8.608 -3.752 -3.752 -3.647 -0.092 -2.632 -4.224 1.666 -3.337 -3.668 0.087 -4.064 -1.822 2.604 -3.911 1.827 -2.571 ML 82 80 6 85 6 1 3 55 75 -6.429 -6.775 -1.081 -1.184 -6.625 -4.154 0.150 -0.369 -0.435 0.460 MR 83 80 6 85 6 1 2 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 4 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 4 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 26 64 C G - - MP 87 86 6 91 4 2 5 54 73 -7.250 -7.457 -0.043 -5.871 -3.831 -3.859 -3.808 -0.264 -1.495 -4.458 3.400 -1.783 -3.834 -0.136 -4.256 -1.979 0.688 -4.045 -0.719 -2.779 ML 88 86 6 91 4 1 2 54 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 54 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 53 72 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 3 56 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - A - - - ML 93 92 6 95 3 1 4 51 71 -8.247 -0.017 -6.901 1.817 -2.944 -2.520 -2.545 D 94 92 6 95 3 0 0 50 69 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - U - - - ML 96 95 3 98 3 1 4 50 69 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 97 95 3 98 3 0 0 49 68 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 2 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - G - - - ML 99 98 3 101 3 1 3 49 68 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 100 98 3 101 3 0 0 48 67 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 2 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 102 101 3 104 3 1 3 48 67 -8.247 -0.017 -6.901 0.093 -1.921 1.187 -1.347 D 103 101 3 104 3 0 0 47 66 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - a - - - ML 105 104 3 107 3 1 2 47 66 -8.247 -0.017 -6.901 0.909 -1.650 0.412 -1.081 D 106 104 3 107 3 0 0 46 65 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - a - - - ML 108 107 3 110 3 1 2 46 65 -8.247 -0.017 -6.901 0.645 -0.934 -0.730 0.390 D 109 107 3 110 3 0 0 45 64 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - a - - - ML 111 110 3 113 3 1 2 45 64 -8.247 -0.017 -6.901 0.755 -1.396 0.392 -0.689 D 112 110 3 113 3 0 0 44 63 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - U - - - ML 114 113 3 116 3 1 1 44 63 -8.620 -0.016 -6.938 -2.022 -1.927 -2.778 1.742 D 115 113 3 116 3 0 0 43 62 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 63 - a - - MR 117 116 3 119 3 1 1 43 62 -8.620 -0.042 -5.244 0.959 -0.333 -0.804 -0.538 D 118 116 3 119 3 0 0 41 60 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 62 - g - - MR 120 119 3 122 3 1 1 42 61 -8.594 -0.016 -6.911 -0.076 -1.084 0.578 0.120 D 121 119 3 122 3 0 0 40 59 -6.632 -1.185 -0.862 IR 122 122 3 122 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 61 - c - - MR 123 122 3 125 3 1 1 41 60 -8.620 -0.016 -6.938 -0.449 0.785 -1.266 0.174 D 124 122 3 125 3 0 0 39 58 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 60 - U - - MR 126 125 3 128 3 1 1 40 59 -8.620 -0.016 -6.938 -1.558 -1.232 -2.301 1.600 D 127 125 3 128 3 0 0 38 57 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 59 - U - - MR 129 128 3 131 3 1 1 39 58 -8.620 -0.016 -6.938 -0.975 0.204 -1.758 1.031 D 130 128 3 131 3 0 0 37 56 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 58 - U - - MR 132 131 3 134 3 1 1 38 57 -8.620 -0.016 -6.938 -1.379 -0.893 -2.124 1.510 D 133 131 3 134 3 0 0 36 55 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 57 - U - - MR 135 134 3 137 3 1 1 37 56 -8.620 -0.016 -6.938 -1.526 -1.176 -2.270 1.586 D 136 134 3 137 3 0 0 35 54 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 56 - a - - MR 138 137 3 140 5 1 1 36 55 -7.343 -0.033 -7.158 -7.370 -8.262 0.435 0.038 -0.279 -0.327 D 139 137 3 140 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 35 55 U A - - MP 141 140 3 145 6 2 2 35 54 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -4.582 -4.541 -4.386 -0.799 -3.221 -4.889 1.118 -3.970 -4.403 -0.593 -4.757 -2.539 3.465 -4.687 -0.315 -3.182 ML 142 140 3 145 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 36 54 G C - - MP 147 146 6 151 6 2 2 33 52 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -5.294 -3.362 -5.467 -0.181 -6.006 -4.902 -1.232 -5.733 -4.669 3.747 -4.971 -1.088 -1.604 -4.824 -3.303 -4.335 ML 148 146 6 151 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 37 53 c g - - MP 153 152 6 157 6 2 2 31 50 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -3.631 -3.603 -3.579 0.122 -2.619 -4.223 2.401 -3.295 -3.577 0.305 -4.011 -1.607 2.374 -3.813 0.941 -2.470 ML 154 152 6 157 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 38 52 a u - - MP 159 158 6 163 6 2 2 29 48 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -3.256 -2.502 -3.333 2.736 -3.709 -4.354 0.395 -3.613 -3.356 1.852 -3.868 0.743 0.142 -3.557 -1.449 -1.215 ML 160 158 6 163 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 39 51 g c - - MP 165 164 6 169 6 2 2 27 46 -9.230 -9.170 -0.038 -5.885 -8.226 -8.621 -1.976 -1.976 -1.204 1.208 -2.154 -2.962 1.564 -2.484 -1.629 2.109 -1.856 -0.354 1.096 -2.250 -0.280 -1.351 ML 166 164 6 169 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 40 50 G C - - MP 171 170 6 175 4 2 2 25 44 -7.206 -7.413 -0.080 -4.606 -4.925 -3.177 -5.034 0.110 -5.788 -4.821 -1.010 -5.392 -4.498 3.669 -4.823 -0.439 -1.309 -4.588 -3.058 -3.914 ML 172 170 6 175 4 1 1 25 45 -3.945 -4.128 -0.435 -2.857 0.206 -0.669 0.405 -0.163 MR 173 170 6 175 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 41 - u - - - ML 177 176 6 179 3 1 1 22 41 -8.216 -0.285 -2.508 -0.919 0.420 -1.713 0.871 D 178 176 6 179 3 0 0 21 40 -6.485 -1.998 -0.437 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 42 - u - - - ML 180 179 3 182 3 1 1 21 40 -7.951 -0.056 -4.868 -0.697 0.324 -1.466 0.823 D 181 179 3 182 3 0 0 20 39 -7.798 -0.557 -1.662 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 43 - U - - - ML 183 182 3 185 3 1 1 20 38 -8.179 -0.018 -6.833 -1.262 -0.793 -2.006 1.463 D 184 182 3 185 3 0 0 19 38 -6.776 -1.318 -0.762 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 44 - U - - - ML 186 185 3 188 3 1 1 19 37 -8.218 -0.017 -6.872 -1.513 -1.201 -2.256 1.588 D 187 185 3 188 3 0 0 18 37 -6.461 -1.202 -0.852 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 45 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.247 -0.081 -4.291 -2.022 -1.927 -2.778 1.742 D 190 188 3 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 46 - U - - - ML 192 191 3 194 3 1 1 16 35 -8.184 -0.018 -6.838 -1.901 -1.826 -2.652 1.719 D 193 191 3 194 3 0 0 15 34 -6.740 -0.904 -1.132 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 47 - U - - - ML 195 194 3 197 3 1 1 15 33 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 48 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.247 -0.143 -3.453 -2.171 -3.473 1.828 -2.859 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 49 - u - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -0.122 -0.521 -0.721 0.830 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Spd-sr37 ACC RF02419 DESC Streptococcus sRNA Spd-sr37 LENG 67 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 20:02:14 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 25 EFFN 3.500366 CKSUM 3785478701 STATS LOCAL MSV -7.9913 0.71905 STATS LOCAL VITERBI -8.9660 0.71905 STATS LOCAL FORWARD -3.7284 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40046 1.71911 1.43791 1.08806 1.38629 1.38629 1.38629 1.38629 0.18716 2.20321 2.80947 0.79370 0.60179 0.00000 * 1 2.19792 0.37535 2.99806 1.88363 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03350 4.10606 4.10606 1.46634 0.26236 0.42041 1.06937 2 0.19673 3.04899 2.95573 2.53649 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 3 0.09219 3.72616 3.40568 3.48032 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 4 1.93818 2.30971 2.49956 0.39360 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 5 0.44706 2.24544 2.47600 1.76881 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.06299 4.15158 3.09420 1.46634 0.26236 1.09861 0.40547 6 0.98716 2.13578 1.10747 1.72137 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.03298 4.12156 4.12156 1.46634 0.26236 0.52752 0.89176 7 1.44989 1.31860 2.13259 0.96926 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 8 1.29259 1.19064 1.91176 1.29611 10 c - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 9 0.18127 3.23216 2.58720 2.97423 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 10 3.07591 2.96323 3.60813 0.13342 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 11 3.18278 4.11785 0.08649 3.68457 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 12 0.09219 3.72616 3.40568 3.48032 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 13 3.07591 2.96323 3.60813 0.13342 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 14 3.18278 4.11785 0.08649 3.68457 16 G - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 15 3.18278 4.11785 0.08649 3.68457 17 G - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 16 3.07591 2.96323 3.60813 0.13342 18 U - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 17 3.42961 0.11399 3.99043 2.86749 19 C - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 18 0.09219 3.72616 3.40568 3.48032 20 A - - : 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 19 0.26445 3.00119 2.08023 2.85179 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 20 0.21758 3.22122 2.20690 3.08815 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 21 2.13414 3.31113 0.22153 3.12612 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 22 3.10660 0.20730 2.96108 2.40012 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 23 2.76777 1.64911 2.58817 0.40075 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 24 2.88563 0.29009 2.71629 2.04128 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 25 0.09219 3.72616 3.40568 3.48032 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 26 3.07591 2.96323 3.60813 0.13342 28 U - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 27 3.18278 4.11785 0.08649 3.68457 29 G - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 28 1.34095 2.89136 0.50855 2.50670 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 29 0.71791 2.69597 1.06209 2.31244 31 a - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 30 0.91418 2.10216 1.92291 1.10629 32 a - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 31 0.83734 2.46641 1.07579 1.95745 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 32 3.07591 2.96323 3.60813 0.13342 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 33 3.40144 2.15121 3.19870 0.21132 35 U - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 34 2.90629 3.72152 0.11046 3.66124 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 35 2.59012 1.05260 2.36594 0.72961 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 36 0.73286 2.54986 1.10245 2.21348 38 a - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 37 1.59572 1.53113 1.00281 1.54132 39 g - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 38 2.64795 3.48991 0.14631 3.35780 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.05652 4.15158 3.23875 1.46634 0.26236 1.09861 0.40547 39 2.16269 1.05218 2.72664 0.75423 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.24347 4.12783 1.60955 1.46634 0.26236 1.50216 0.25186 40 1.97629 1.12182 2.52133 0.78663 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06870 3.92466 3.06517 1.46634 0.26236 0.27711 1.41871 41 2.44732 2.00800 2.96686 0.31779 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03372 4.09974 4.09974 1.46634 0.26236 0.77956 0.61361 42 2.64616 2.33787 3.16382 0.23537 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03270 4.12991 4.12991 1.46634 0.26236 0.61343 0.77977 43 3.07591 2.96323 3.60813 0.13342 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08158 4.15158 2.77101 1.46634 0.26236 1.09861 0.40547 44 2.98495 2.88675 3.51483 0.14624 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03358 4.10359 4.10359 1.46634 0.26236 0.40738 1.09480 45 3.07591 2.96323 3.60813 0.13342 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 46 3.18278 4.11785 0.08649 3.68457 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.13061 4.15158 2.23777 1.46634 0.26236 1.09861 0.40547 47 1.49266 1.77483 1.90215 0.78424 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.07089 4.05622 2.97356 1.46634 0.26236 0.25854 1.47920 48 3.61980 0.18246 3.37447 2.24661 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03302 4.12037 4.12037 1.46634 0.26236 0.51724 0.90675 49 1.71904 1.15253 1.26802 1.49818 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 50 2.61561 1.47660 2.35406 0.50504 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 51 1.01919 2.53761 0.76412 2.36112 53 g - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 52 3.85168 0.13195 3.57535 2.59878 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 53 0.26189 3.37322 1.87001 3.16993 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 54 1.07554 1.32880 1.57355 1.67782 56 a - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 55 2.65553 2.31518 3.17339 0.23683 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 56 2.54007 2.08525 3.05967 0.28774 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 57 2.21032 1.21618 2.76400 0.63311 59 U - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 58 2.67989 2.36021 3.19781 0.22793 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 59 1.76701 0.78219 2.34692 1.28703 61 c - - - 1.38629 1.38629 1.38629 1.38629 0.05406 4.15158 3.29984 1.46634 0.26236 1.09861 0.40547 60 1.47396 2.21865 0.93354 1.31280 62 g - - - 1.38629 1.38629 1.38629 1.38629 0.03269 4.13021 4.13021 1.46634 0.26236 0.61699 0.77559 61 0.67909 1.60860 1.99322 1.85472 63 A - - - 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 62 2.14166 2.89668 0.29510 2.49038 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.05469 4.15158 3.28386 1.46634 0.26236 1.09861 0.40547 63 0.84732 2.76719 0.83824 2.57531 65 g - - > 1.38629 1.38629 1.38629 1.38629 0.03271 4.12960 4.12960 1.46634 0.26236 0.60966 0.78424 64 2.64677 2.98290 0.20069 2.80825 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 65 3.39018 2.30010 3.15681 0.19421 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.06145 4.15158 3.12668 1.46634 0.26236 1.09861 0.40547 66 3.44052 2.57320 3.12687 0.16510 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.11400 4.12305 2.39088 1.46634 0.26236 1.56587 0.23434 67 3.25393 2.40831 2.92722 0.20106 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.01799 4.02704 * 1.46634 0.26236 0.00000 * //