INFERNAL1/a [1.1.4 | Dec 2020] NAME Spd-sr07 ACC RF02418 DESC Streptococcus sRNA Spd-sr07 STATES 193 NODES 49 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 20:02:12 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.573242 CKSUM 3986590959 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 61.60 NC 42.30 EFP7GF -7.9709 0.71913 ECMLC 0.49896 -11.17557 1.88056 1600000 809861 0.001482 ECMGC 0.38298 -16.42377 -0.08175 1600000 209021 0.001914 ECMLI 0.46614 -8.91192 3.41410 1600000 375413 0.003196 ECMGI 0.42694 -10.40791 2.98455 1600000 121696 0.003287 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.794 -7.001 -0.059 -5.415 IL 1 1 2 1 4 1 10 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 10 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 10 79 99 -7.822 -0.023 -6.476 -1.228 -1.271 -1.947 1.536 D 4 2 3 5 3 0 4 78 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 9 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 9 78 98 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 7 5 3 8 3 0 3 77 97 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 8 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 8 77 97 -7.822 -0.023 -6.476 -1.402 1.518 -2.212 -0.886 D 10 8 3 11 3 0 2 76 96 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 7 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 8 76 96 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 13 11 3 14 3 0 2 75 95 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 6 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 7 75 95 -7.822 -0.023 -6.476 -1.276 -2.446 1.643 -1.831 D 16 14 3 17 3 0 1 74 93 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 6 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 6 74 94 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 19 17 3 20 3 0 1 73 92 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 5 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 6 73 93 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 22 20 3 23 3 0 0 72 91 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 4 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 5 72 91 -7.822 -0.023 -6.476 -1.276 -2.446 1.643 -1.831 D 25 23 3 26 3 0 0 71 90 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 4 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 4 71 90 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 28 26 3 29 3 0 0 69 89 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 3 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 4 70 89 -7.822 -0.023 -6.476 -1.228 -1.271 -1.947 1.536 D 31 29 3 32 3 0 0 68 88 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 2 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 3 69 88 -7.822 -0.023 -6.476 -1.228 -1.271 -1.947 1.536 D 34 32 3 35 3 0 0 67 87 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 2 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 3 68 87 -7.822 -0.023 -6.476 -1.228 -1.271 -1.947 1.536 D 37 35 3 38 3 0 0 66 86 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 2 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 3 67 86 -7.822 -0.023 -6.476 -1.276 -2.446 1.643 -1.831 D 40 38 3 41 3 0 0 65 85 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 2 66 85 -7.822 -0.023 -6.476 -1.276 -2.446 1.643 -1.831 D 43 41 3 44 3 0 0 64 84 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 1 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 2 64 84 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 46 44 3 47 3 0 0 63 83 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 1 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 2 63 83 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 49 47 3 50 3 0 0 62 81 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 1 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 1 62 81 -7.822 -0.023 -6.476 -1.228 -1.271 -1.947 1.536 D 52 50 3 53 3 0 0 61 80 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 1 61 80 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 55 53 3 56 3 0 0 60 79 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 1 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 1 60 79 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 58 56 3 59 3 0 0 59 78 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 1 59 78 -7.822 -0.023 -6.476 -1.276 -2.446 1.643 -1.831 D 61 59 3 62 3 0 0 58 77 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 1 58 77 -7.822 -0.023 -6.476 -1.402 1.518 -2.212 -0.886 D 64 62 3 65 3 0 0 57 76 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 1 57 76 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 67 65 3 68 3 0 0 56 75 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 1 56 75 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 70 68 3 71 3 0 0 55 74 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 72 71 3 74 3 1 1 55 73 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 73 71 3 74 3 0 0 53 72 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 1 54 72 -2.648 -0.270 -6.476 1.650 -2.087 -1.747 -1.602 D 76 74 3 77 3 0 0 51 70 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 54 73 -1.849 -0.557 -4.549 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - - - ML 78 77 3 80 5 1 1 52 71 -6.970 -0.043 -6.786 -6.998 -7.889 1.650 -2.087 -1.747 -1.602 D 79 77 3 80 5 0 0 51 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 80 80 3 80 5 1 1 52 71 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 28 64 g c - - MP 81 80 3 85 6 2 2 51 70 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.021 -2.374 -3.090 1.000 -3.244 -3.725 0.788 -3.437 -3.165 2.914 -3.607 -0.285 0.496 -0.162 -1.035 -2.164 ML 82 80 3 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 51 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 29 63 C G - - MP 87 86 6 91 6 2 2 49 68 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -4.266 -4.145 -4.002 -0.405 -2.786 -4.451 3.453 -3.567 -4.043 -0.120 -4.333 -2.089 0.755 -4.353 -0.487 -2.894 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 49 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 30 62 U A - - MP 93 92 6 97 6 2 2 47 66 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.903 -3.717 -3.772 -0.034 -2.778 -4.362 1.543 -3.453 -3.780 0.267 -4.167 -1.625 3.171 -4.064 -0.461 -2.631 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 47 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 61 U A - - MP 99 98 6 103 6 2 2 45 64 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.903 -3.717 -3.772 -0.034 -2.778 -4.362 1.543 -3.453 -3.780 0.267 -4.167 -1.625 3.171 -4.064 -0.461 -2.631 ML 100 98 6 103 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 45 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 60 U A - - MP 105 104 6 109 6 2 2 43 62 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.903 -3.717 -3.772 -0.034 -2.778 -4.362 1.543 -3.453 -3.780 0.267 -4.167 -1.625 3.171 -4.064 -0.461 -2.631 ML 106 104 6 109 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 59 A U - - MP 111 110 6 115 6 2 2 41 60 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.565 -2.657 -3.599 3.162 -3.826 -4.871 0.459 -3.654 -3.502 1.323 -4.038 -0.173 0.041 -4.095 -1.483 -2.448 ML 112 110 6 115 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 58 A U - - MP 117 116 6 121 6 2 2 39 58 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.565 -2.657 -3.599 3.162 -3.826 -4.871 0.459 -3.654 -3.502 1.323 -4.038 -0.173 0.041 -4.095 -1.483 -2.448 ML 118 116 6 121 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 57 A U - - MP 123 122 6 127 6 2 2 37 56 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.565 -2.657 -3.599 3.162 -3.826 -4.871 0.459 -3.654 -3.502 1.323 -4.038 -0.173 0.041 -4.095 -1.483 -2.448 ML 124 122 6 127 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 56 U A - - MP 129 128 6 133 6 2 2 35 54 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.903 -3.717 -3.772 -0.034 -2.778 -4.362 1.543 -3.453 -3.780 0.267 -4.167 -1.625 3.171 -4.064 -0.461 -2.631 ML 130 128 6 133 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 37 55 C G - - MP 135 134 6 139 6 2 2 33 52 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -4.266 -4.145 -4.002 -0.405 -2.786 -4.451 3.453 -3.567 -4.043 -0.120 -4.333 -2.089 0.755 -4.353 -0.487 -2.894 ML 136 134 6 139 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 38 54 A U - - MP 141 140 6 145 6 2 2 31 50 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.565 -2.657 -3.599 3.162 -3.826 -4.871 0.459 -3.654 -3.502 1.323 -4.038 -0.173 0.041 -4.095 -1.483 -2.448 ML 142 140 6 145 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 39 53 A U - - MP 147 146 6 151 4 2 2 29 48 -6.724 -7.969 -0.089 -4.423 -3.565 -2.657 -3.599 3.162 -3.826 -4.871 0.459 -3.654 -3.502 1.323 -4.038 -0.173 0.041 -4.095 -1.483 -2.448 ML 148 146 6 151 4 1 1 28 47 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 28 47 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 26 45 -12.737 -14.007 -2.036 -0.404 IL 151 151 5 151 4 1 1 28 47 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 52 - C - - MR 153 152 6 155 5 1 1 27 45 -6.970 -0.043 -6.786 -6.998 -7.889 -1.402 1.518 -2.212 -0.886 D 154 152 6 155 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 51 u g - - MP 156 155 3 160 6 2 2 26 44 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.806 -3.715 -3.573 -0.078 -2.424 -4.046 1.854 -3.168 -3.611 0.165 -3.933 -1.725 1.048 -3.918 2.800 -2.497 ML 157 155 3 160 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 50 A U - - MP 162 161 6 166 6 2 2 24 42 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.565 -2.657 -3.599 3.162 -3.826 -4.871 0.459 -3.654 -3.502 1.323 -4.038 -0.173 0.041 -4.095 -1.483 -2.448 ML 163 161 6 166 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 42 49 G C - - MP 168 167 6 172 6 2 2 22 40 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -4.467 -2.964 -4.545 0.379 -4.846 -4.584 -0.277 -4.765 -4.143 3.565 -4.500 -0.655 -0.671 -4.286 -2.301 -3.426 ML 169 167 6 172 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 43 48 U A - - MP 174 173 6 178 4 2 2 20 38 -6.794 -7.001 -0.059 -5.415 -3.903 -3.717 -3.772 -0.034 -2.778 -4.362 1.543 -3.453 -3.780 0.267 -4.167 -1.625 3.171 -4.064 -0.461 -2.631 ML 175 173 6 178 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - C - - - ML 180 179 6 182 3 1 1 16 35 -7.822 -0.023 -6.476 -1.402 1.518 -2.212 -0.886 D 181 179 6 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - U - - - ML 183 182 3 185 3 1 1 15 33 -7.822 -0.023 -6.476 -1.228 -1.271 -1.947 1.536 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 186 185 3 188 3 1 1 13 32 -7.822 -0.023 -6.476 1.650 -2.087 -1.747 -1.602 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.650 -2.087 -1.747 -1.602 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Spd-sr07 ACC RF02418 DESC Streptococcus sRNA Spd-sr07 LENG 63 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 20:02:12 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 2.118164 CKSUM 3986590959 STATS LOCAL MSV -8.3818 0.71913 STATS LOCAL VITERBI -8.7109 0.71913 STATS LOCAL FORWARD -3.3649 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.01746 1.76083 1.58980 1.33706 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 0.00000 * 1 2.50682 2.48849 3.01977 0.24000 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 2 0.17480 3.12862 2.86364 2.82121 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 3 2.71215 0.23055 3.28627 2.28162 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 4 0.17480 3.12862 2.86364 2.82121 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 5 2.58551 3.44703 0.16946 3.02242 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 6 0.17480 3.12862 2.86364 2.82121 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 7 0.17480 3.12862 2.86364 2.82121 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 8 2.58551 3.44703 0.16946 3.02242 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 9 0.17480 3.12862 2.86364 2.82121 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 10 2.50682 2.48849 3.01977 0.24000 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 11 2.50682 2.48849 3.01977 0.24000 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 12 2.50682 2.48849 3.01977 0.24000 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 13 2.58551 3.44703 0.16946 3.02242 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 14 2.58551 3.44703 0.16946 3.02242 14 G - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 15 0.17480 3.12862 2.86364 2.82121 15 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 16 0.17480 3.12862 2.86364 2.82121 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 17 2.50682 2.48849 3.01977 0.24000 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 18 0.17480 3.12862 2.86364 2.82121 18 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 19 0.17480 3.12862 2.86364 2.82121 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 20 2.58551 3.44703 0.16946 3.02242 20 G - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 21 2.71215 0.23055 3.28627 2.28162 21 C - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 22 0.17480 3.12862 2.86364 2.82121 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 23 0.17480 3.12862 2.86364 2.82121 23 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 24 0.17480 3.12862 2.86364 2.82121 24 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 25 0.17480 3.12862 2.86364 2.82121 25 A - - : 1.38629 1.38629 1.38629 1.38629 0.24902 1.61584 3.82979 0.20582 1.68192 1.09861 0.40547 26 0.17480 3.12862 2.86364 2.82121 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 27 1.97194 2.26801 0.54963 1.71407 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 28 3.08471 0.26921 2.84522 2.02382 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 29 2.84853 1.81409 2.58492 0.35143 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 30 2.84798 1.81406 2.58469 0.35150 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 31 2.84741 1.81404 2.58445 0.35158 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 32 0.39080 2.63930 1.73735 2.57587 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 33 0.39085 2.63913 1.73732 2.57561 34 A - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 34 0.39090 2.63899 1.73730 2.57539 35 A - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 35 2.84568 1.81398 2.58373 0.35182 36 U - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 36 3.08004 0.26979 2.84308 2.02303 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 37 0.39100 2.63867 1.73725 2.57493 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 38 0.39102 2.63860 1.73724 2.57482 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 39 2.81557 1.52421 2.60532 0.43316 40 U - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 40 0.39207 2.63524 1.73675 2.56981 41 A - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 41 2.50966 3.12048 0.18915 3.05953 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 42 2.84359 1.81390 2.58285 0.35210 43 U - - < 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 43 2.71215 0.23055 3.28627 2.28162 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 44 2.50682 2.48849 3.01977 0.24000 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 45 0.17480 3.12862 2.86364 2.82121 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 46 0.17480 3.12862 2.86364 2.82121 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 47 0.39936 2.76580 1.65090 2.59762 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 48 3.27231 0.22193 2.95764 2.21490 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 49 2.80456 2.01872 2.45273 0.32769 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 50 2.05202 2.79175 0.30816 2.58478 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 51 2.71215 0.23055 3.28627 2.28162 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 52 2.80113 2.01837 2.45150 0.32819 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 53 2.80133 2.01839 2.45158 0.32816 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 54 2.29820 3.00990 0.23346 2.83913 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 55 0.39949 2.76530 1.65087 2.59698 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 56 2.80210 2.01847 2.45185 0.32805 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 57 2.80237 2.01850 2.45195 0.32801 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 58 2.80257 2.01852 2.45202 0.32798 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 59 0.39940 2.76566 1.65089 2.59743 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 60 0.39945 2.76546 1.65088 2.59718 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 61 0.39961 2.76484 1.65083 2.59640 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 62 2.29630 3.00743 0.23408 2.83608 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04440 3.82979 3.82979 1.46634 0.26236 1.09861 0.40547 63 2.37962 0.50616 2.07926 1.71709 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.02245 3.80783 * 1.46634 0.26236 0.00000 * //