# STOCKHOLM 1.0
#=GF ID VR-RNA
#=GF AC RF02417
#=GF DE VR-RNA
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 100.0
#=GF NC 62.0
#=GF TC 403.3
#=GF SE Eberhardt R
#=GF SS Predicted; mfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.67 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 19835966
#=GF RT Identification of a two-component VirR/VirS regulon in Clostridium
#=GF RT perfringens.
#=GF RA Ohtani K, Hirakawa H, Tashiro K, Yoshizawa S, Kuhara S, Shimizu T
#=GF RL Anaerobe. 2010;16:258-264.
#=GF WK VR-RNA
#=GF SQ 3

CP000246.1/1369398-1369002 GUAAUAUUUCUUAAGUAAAUAUUUAUUUUUAUUAAGCAAGGGGUGAUUUUUUUGAAACAUACAAAAAGGAUUUUAACAAGUGCAAUUUUAAUUACAUUAAUAACUCUUUUUUCUCCCUUAAUACUUAAAAAUAGCAUAGCUUUAUAUAUUGAACAAAGAGUAUCUUAUUUUACAUCUUUAGAAGUUGUUUCAAGUAUUAU
AB004104.1/755-1151        GUAAUAUUUCUUAAGUAAAUAUUUAUUUUUAUUAAGCAAGGGGUGAUUUUUUUGAAACAUACAAAAAGGAUUUUAACAAGUGCAAUUUUAAUUACAUUAAUAACUCUUUUUUCUCCCUUAAUACUUAAAAAUAGCAUAGCUUUAUAUAUUGAACAAAGAGUAUCUUAUUUUACAUCUUUAGAAGUUGUUUCAAAUAUUAU
CP000312.1/1171261-1170868 GUAAUAUUUCUUAAGUAAAUAUUUAUUUUUAUUAAGCAAGGGGUGAUU-UUUUGAAACAUACAAAAAAGAUUUUAACAAGUGCAAUUUUAAUUACGUUAAUAGCUCUUUUUUCUCCCUUAAUACUUAAAAAUAGCAUAGCUUUAUAUAUUGAACAAAGAGUAUAUUAUUUUAUAUCUUUAGAGGUUGUUUCAAAUAUUAU
#=GC SS_cons               ::::[[[[---[[[[[[[-[[[[[[[[[[[[,,((((((((((--((---(((((((((------((((((,,,,,,,<<<<-<<<____>>>->>>>,,,,<<<<<<<-<<<-----<<<--<<____________>>-->>>------>>>->>>>>>>,,,,,,,,,,,,))))))------)))))))))----))
#=GC RF                    GUAAcauuUCUuaaGuaaAuauuuauuuuuaUUaaGCaaGGGGUGauUUUuuuGaaaCaUACAAAaagGauUUUAACAaguGCaauUUUAauuACauuAAUAaCuCuuuUuuCUCCCUuaaUACuUAAAAAUAGCAUaGCUuuaUAUAUUGaaCaaaGaGuAUcUUAUUUUAcauCcuuAGAaGUuGuuuCaaaUAUUau

CP000246.1/1369398-1369002 AAGUCCCAUACUUGCUUUAAUAUCAAUAUUUUCAAUUGCAUAUUCCAUAAUUGUAAUUAAAAAUAAAUAAUUACUUAUUAAUGAUUUUACUUUAAUUUAGUAAAAAACCUUACAUAAAAUUACCACCAUAACUAUUGAUCCUAGAAAUAGAACUGUCCACUCUAUUUUUAGGAUUUUUAUUUUUUUCUUCUUUAUGU
AB004104.1/755-1151        AAGUCCCAUACUUGCUUUAAUAUCAAUAUUUUCAAUUGCAUAUUCCAUAAUUGUAAUUAAAAAUAAAUAAUUACUUAUUAAUGAUUUUACUUUAAUUUAGUAAAAAACCUUACAUAAAAUUACCACCAUAACUAUUGAUCCUAGAAAUAGAACUGUCCACUCUAUUUUUAGGAUUUUUAUUUUUUUCUUCUUUAUGU
CP000312.1/1171261-1170868 AAACCCCAUACUUGCUUUAAUAUCAAUAUUUUCAAUUGCAUAUUCCAUAAUUGUAAUUAAAAAUAAAUAAUUACUUAUUAAUAAUUUUACUUUAAUUUAGUAAAA-ACCUUACAUAAAAUUACCACCAUAACUAUUGAUCCUAAAAAUAGAACUGUCCACUCUAUUUUUAGGAUUUUUAUUU-UUUCUUCUUUAUGU
#=GC SS_cons               ----)))---))))))),,,,,,,,,,,,,,,,,<<<<<<___________>>>>>>]]]]]]]]]]]]-]]]]]]]--]]]]:<<<<<<<_______>>>>>>>::::::<<<<<<<-----------<<-<<--<<<<<<<<<<<<<<<_________>>>>>>>>>>>>>>>-->>->>-------->>>>>>>
#=GC RF                    AAguCCCAUACuuGCuuUAAUAUCAAUAUUUUCAauugCaUAUUCCAUAAUuGuaauuaaaaauaaauaAuuaCuuaUUaaugAuuuuaCuUUAAUUUaGuaaaaAACCUUaCauaaaAUUACCACCAUaaCuaUUgauCCuagaaauaGaACUGUCCACuCuauuucuaGGauuUUuaUuuUUUUCUUCuuuauGu
//
