INFERNAL1/a [1.1.4 | Dec 2020] NAME TCV_H4 ACC RF02416 DESC Turnip crinkle virus 3'UTR STATES 157 NODES 44 CLEN 51 W 66 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 20:01:53 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 3207344470 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 57.10 NC 36.90 EFP7GF -4.4712 0.73778 ECMLC 0.57171 -7.20327 3.62422 1600000 585536 0.002049 ECMGC 0.41602 -13.65413 0.64759 1600000 153464 0.002606 ECMLI 0.56934 -5.27275 4.82628 1600000 376946 0.003183 ECMGI 0.45463 -9.55697 2.92041 1600000 116319 0.003439 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 66 86 -6.977 -7.184 -0.052 -5.598 IL 1 1 2 1 4 1 12 70 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 12 66 86 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 4 2 3 5 3 0 6 65 85 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 11 65 85 -7.991 -0.020 -6.645 0.722 -1.418 0.500 -0.831 D 7 5 3 8 3 0 6 64 84 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 10 64 84 -7.991 -0.020 -6.645 0.620 0.278 -1.131 -0.332 D 10 8 3 11 3 0 5 63 83 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 10 63 83 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 13 11 3 14 3 0 4 62 82 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 8 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 9 62 82 -7.991 -0.020 -6.645 0.620 0.278 -1.131 -0.332 D 16 14 3 17 3 0 4 61 81 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 8 61 81 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 19 17 3 20 3 0 3 60 79 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 1 8 60 80 -7.991 -0.020 -6.645 0.639 0.254 -1.127 -0.336 D 22 20 3 23 3 0 2 59 78 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 7 59 78 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 25 23 3 26 3 0 2 58 77 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 7 58 77 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 28 26 3 29 3 0 1 57 76 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 6 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 6 57 76 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 31 29 3 32 3 0 1 56 75 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 5 56 75 -7.991 -0.020 -6.645 0.547 -0.857 -1.068 0.594 D 34 32 3 35 3 0 0 55 74 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 5 55 74 -8.380 -0.018 -6.697 1.730 -2.426 -2.052 -1.973 D 37 35 3 38 3 0 0 54 73 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 3 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 51 - A - - MR 39 38 3 41 3 1 4 54 73 -8.380 -0.018 -6.697 1.730 -2.426 -2.052 -1.973 D 40 38 3 41 3 0 0 52 71 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 3 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 50 - C - - MR 42 41 3 44 3 1 4 53 72 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 43 41 3 44 3 0 0 51 70 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 49 - C - - MR 45 44 3 47 3 1 3 52 71 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 46 44 3 47 3 0 0 50 70 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 48 - A - - MR 48 47 3 50 5 1 3 51 70 -7.117 -0.038 -6.932 -7.144 -8.036 1.730 -2.426 -2.052 -1.973 D 49 47 3 50 5 0 0 49 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 47 C G - - MP 51 50 3 55 6 2 4 50 69 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 52 50 3 55 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 46 C G - - MP 57 56 6 61 6 2 3 48 67 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 58 56 6 61 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 45 C G - - MP 63 62 6 67 4 2 2 46 65 -6.977 -7.184 -0.052 -5.598 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 64 62 6 67 4 1 1 46 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - C - - - ML 69 68 6 71 3 1 1 43 62 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 70 68 6 71 3 0 0 42 61 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 44 - A - - MR 72 71 3 74 3 1 1 42 61 -8.380 -0.018 -6.697 1.730 -2.426 -2.052 -1.973 D 73 71 3 74 3 0 0 41 60 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 43 - U - - MR 75 74 3 77 3 1 1 41 60 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 76 74 3 77 3 0 0 40 59 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 42 - U - - MR 78 77 3 80 3 1 1 40 59 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 79 77 3 80 3 0 0 39 58 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 41 - G - - MR 81 80 3 83 3 1 1 39 58 -8.380 -0.018 -6.697 -1.638 -2.867 1.736 -2.254 D 82 80 3 83 3 0 0 38 57 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 40 - U - - MR 84 83 3 86 5 1 1 38 57 -7.117 -0.038 -6.932 -7.144 -8.036 -1.535 -1.523 -2.271 1.632 D 85 83 3 86 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 39 C G - - MP 87 86 3 91 6 2 2 37 56 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 88 86 3 91 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 38 A U - - MP 93 92 6 97 6 2 2 35 54 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 94 92 6 97 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 37 G C - - MP 99 98 6 103 6 2 2 33 52 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 100 98 6 103 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 20 36 g c - - MP 105 104 6 109 6 2 2 31 50 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.423 -2.881 -3.406 0.755 -2.921 -4.094 2.246 -3.384 -3.451 2.386 -3.884 -0.682 0.983 -3.522 -0.549 -2.314 ML 106 104 6 109 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 35 U A - - MP 111 110 6 115 6 2 2 29 48 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 112 110 6 115 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 34 C G - - MP 117 116 6 121 4 2 2 27 46 -6.977 -7.184 -0.052 -5.598 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 118 116 6 121 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 23 - G - - - ML 123 122 6 125 3 1 1 24 43 -7.991 -0.020 -6.645 -1.638 -2.867 1.736 -2.254 D 124 122 6 125 3 0 0 23 42 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 24 - C - - - ML 126 125 3 128 3 1 1 23 42 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 127 125 3 128 3 0 0 22 41 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 25 - U - - - ML 129 128 3 131 3 1 1 22 41 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 130 128 3 131 3 0 0 21 40 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 26 - U - - - ML 132 131 3 134 3 1 1 21 40 -7.991 -0.455 -1.909 -1.535 -1.523 -2.271 1.632 D 133 131 3 134 3 0 0 20 39 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 27 - U - - - ML 135 134 3 137 3 1 1 20 39 -7.564 -0.027 -6.218 -0.791 -0.920 -1.475 1.341 D 136 134 3 137 3 0 0 19 38 -7.946 -0.325 -2.337 IL 137 137 3 137 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 28 - U - - - ML 138 137 3 140 3 1 1 19 37 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 139 137 3 140 3 0 0 18 37 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 29 - a - - - ML 141 140 3 143 3 1 1 18 36 -7.991 -0.020 -6.645 0.703 -1.421 0.524 -0.833 D 142 140 3 143 3 0 0 17 36 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 30 - U - - - ML 144 143 3 146 3 1 1 16 35 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 145 143 3 146 3 0 0 16 34 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 31 - U - - - ML 147 146 3 149 3 1 1 15 33 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 148 146 3 149 3 0 0 15 33 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 32 - U - - - ML 150 149 3 152 3 1 1 13 31 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 151 149 3 152 3 0 0 13 32 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 33 - U - - - ML 153 152 3 155 2 1 1 1 1 * 0.000 -1.535 -1.523 -2.271 1.632 D 154 152 3 155 2 0 0 0 0 * 0.000 IL 155 155 3 155 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 156 155 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME TCV_H4 ACC RF02416 DESC Turnip crinkle virus 3'UTR LENG 51 MAXL 134 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 20:01:53 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 2 EFFN 1.535156 CKSUM 3207344470 STATS LOCAL MSV -7.7585 0.73778 STATS LOCAL VITERBI -9.1852 0.73778 STATS LOCAL FORWARD -2.8342 0.73778 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25797 1.45876 1.53683 1.31608 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.24904 2.81068 2.57763 2.47302 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.91347 2.26098 1.08636 1.85037 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.98427 1.23952 2.08720 1.54773 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.24904 2.81068 2.57763 2.47302 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.98427 1.23952 2.08720 1.54773 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.24904 2.81068 2.57763 2.47302 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.97218 1.25428 2.08512 1.55036 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.24904 2.81068 2.57763 2.47302 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.24904 2.81068 2.57763 2.47302 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.24904 2.81068 2.57763 2.47302 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.02593 1.92181 2.06080 1.00010 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.24904 2.81068 2.57763 2.47302 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.77135 0.37209 2.49030 1.80034 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.77574 0.37133 2.49203 1.80099 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.77734 0.37105 2.49266 1.80122 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.33210 0.34341 2.89222 1.97972 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.77077 0.37219 2.49007 1.80025 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.56444 2.29499 1.49340 2.24477 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.31484 2.78631 0.25523 2.73593 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 1.99564 1.19796 1.00490 1.62870 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53923 1.59685 2.23236 0.49223 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.77698 0.37111 2.49252 1.80117 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.24735 3.05386 0.25504 2.62749 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.33210 0.34341 2.89222 1.97972 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.21762 2.25088 2.71462 0.32907 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.21762 2.25088 2.71462 0.32907 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.33324 3.73767 1.34864 1.46634 0.26236 1.09861 0.40547 27 1.79942 1.92120 2.26072 0.53803 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06434 3.46877 3.46877 1.46634 0.26236 0.16842 1.86431 28 2.21762 2.25088 2.71462 0.32907 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.92554 2.26292 1.07095 1.85180 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.21762 2.25088 2.71462 0.32907 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.21762 2.25088 2.71462 0.32907 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.21762 2.25088 2.71462 0.32907 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.21762 2.25088 2.71462 0.32907 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.07409 2.65825 0.32173 2.53366 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.56114 2.40797 1.43330 2.29336 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.87157 1.09973 1.08218 1.74696 36 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.95891 0.29735 2.61690 2.02262 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.48017 1.74070 2.11263 0.47811 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.07643 2.66084 0.32069 2.53719 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.21762 2.25088 2.71462 0.32907 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.24735 3.05386 0.25504 2.62749 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.21762 2.25088 2.71462 0.32907 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.21762 2.25088 2.71462 0.32907 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.24904 2.81068 2.57763 2.47302 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.07531 2.65960 0.32119 2.53550 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.07587 2.66021 0.32094 2.53634 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.07651 2.66092 0.32066 2.53731 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.24904 2.81068 2.57763 2.47302 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.33210 0.34341 2.89222 1.97972 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.33210 0.34341 2.89222 1.97972 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.24904 2.81068 2.57763 2.47302 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //