# STOCKHOLM 1.0
#=GF ID TCV_H4
#=GF AC RF02416
#=GF DE Turnip crinkle virus 3'UTR
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 41.7
#=GF TC 74.4
#=GF SE Eberhardt R
#=GF SS Published; PMID:19656866
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.41 -Z 2958934 CM SEQDB
#=GF DR SO; 0005836; regulatory_region;
#=GF RN [1]
#=GF RM 19656866
#=GF RT The 3' end of Turnip crinkle virus contains a highly interactive structure
#=GF RT including a translational enhancer that is disrupted by binding to the
#=GF RT RNA-dependent RNA polymerase.
#=GF RA Yuan X, Shi K, Meskauskas A, Simon AE
#=GF RL RNA. 2009;15:1849-1864.
#=GF WK Turnip_crinkle_virus_(TCV)_hairpin_H4
#=GF SQ 2

AY312063.1/3856-3905 AGAAAACAAAAACCCCCAGGUCGCUU-UAUUUUGACCUGUGUUAGGGACCA
L16015.1/3846-3896   AACACAAAAAUACCCCCAGCUCGCUUUUGUUUUGAGCUGUGUUAGGGACCA
#=GC SS_cons         ::::::::::::<<<-<<<<<<___________>>>>>>----->>>::::
#=GC RF              AaaAaAaAAAuACCCCCAGgUCGCUUUUaUUUUGAcCUGUGUUAGGGACCA
//
