# STOCKHOLM 1.0
#=GF ID P33
#=GF AC RF02404
#=GF DE Pseudomonas sRNA P33
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 45.0
#=GF NC 41.9
#=GF TC 64.9
#=GF SE INFERNAL
#=GF SS Predicted; WAR; Clustal_alifold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.68 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 16870723
#=GF RT Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of
#=GF RT sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool
#=GF RT sRNAPredict2.
#=GF RA Livny J, Brencic A, Lory S, Waldor MK
#=GF RL Nucleic Acids Res. 2006;34:3484-3493.
#=GF WK Pseudomonas_sRNA
#=GF SQ 3

AE004091.2/5775061-5775220 CCGCCCGGCACCACCGGUCAAACCAUGGCGUAGGGCGAAUAACCGCAUCGCGGUUAUCCGCCGGCUGUGCAGGGCAGCGGCCCUUGCCCGGAUUUUGGGCAGCGUGCACCAGCAGGCGACAAAUCGGCAUCAAUCGCUGGCGGAAAAGCCCGCUCCGUCA
CP000744.1/6057604-6057747 CCGCCCGGCACCGCCCGCCGAACCGUGGCGCAGGCCA----------------AUAUCCGCCGGUUCGGCGGGGCUGCGGUCCUUGCCCGGAUUUUGGGCAGCGUGCACCAGCAGGCGACAAAUCGGCAGGAAUCGCUGGCGGAAAAGCCCGCUCCGUCA
AAKW01000064.1/31090-30931 CCGCCCGGCACCGUCGAUCAAACCGUGGCGUAGGGCGAAUAACCGCAUCGCGGUUAUCCGCCGGUUCGGCAGGGCUGCGGCCCUUGCCCGGAUUUUGGGCAGCGUGCACCAGCAGGCGACAAAUCGGCAUCAAUCGCUGGCGGAAAAGCCCGCUCCGUCA
#=GC SS_cons               :<<<<<<<______________>>>->>>>::[[[[,,,<<<<<<<___>>>>>>>(((((((((---((<<<<<____>>>>><<<<<<_____>>>>>><<-<<<____>>>->>,,,,,,,,,))-------))))))))),,,]]]]:::::::::
#=GC RF                    CCGCCcGGCACCgcCgguCaAACCgUGGCGuAGGgCgAAuaaccGcAUcgCgguuauCCGCCgGcUcgGCaGGgCuGCGGcCCuuGCCCgGAUUUcGGGCaGCGuGCACCAGCaGGCGACAAAUCGGCAucAAUCgCcGGCGGaAAAGcCCGCUCCGUCA
//
