INFERNAL1/a [1.1.4 | Dec 2020] NAME ClpQY_promoter ACC RF02401 DESC ClpQY promoter STATES 178 NODES 52 CLEN 58 W 132 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 20:00:40 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 7.907593 CKSUM 2191801421 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.10 NC 39.90 EFP7GF -12.3138 0.71931 ECMLC 0.53889 -12.69460 -0.45623 1600000 877834 0.001367 ECMGC 0.38099 -21.27471 -6.90033 1600000 95605 0.004184 ECMLI 0.56177 -10.60931 0.66325 1600000 675114 0.001777 ECMGI 0.38660 -16.89254 -3.43823 1600000 72617 0.005508 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 132 220 -8.220 -9.466 -0.031 -5.919 IL 1 1 2 1 4 1 19 133 221 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 134 221 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 84 - G - - MR 3 2 3 5 3 2 21 132 220 -9.661 -0.008 -7.979 -3.930 -5.418 1.953 -4.665 D 4 2 3 5 3 0 16 130 218 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 20 133 220 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 83 - U - - MR 6 5 3 8 3 2 21 131 219 -9.661 -0.008 -7.979 -3.906 -3.557 -4.701 1.930 D 7 5 3 8 3 0 15 129 217 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 19 132 219 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 82 - G - - MR 9 8 3 11 3 2 20 130 218 -9.661 -0.008 -7.979 -3.930 -5.418 1.953 -4.665 D 10 8 3 11 3 0 15 128 216 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 19 131 218 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 81 - C - - MR 12 11 3 14 3 2 19 129 217 -9.661 -0.008 -7.979 -4.499 1.942 -5.102 -3.571 D 13 11 3 14 3 0 14 127 215 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 18 130 217 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 80 - U - - MR 15 14 3 17 3 1 18 128 216 -9.661 -0.008 -7.979 -2.541 -0.544 -3.317 1.605 D 16 14 3 17 3 0 13 126 214 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 129 216 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 79 - C - - MR 18 17 3 20 3 1 17 127 215 -9.661 -0.036 -5.412 -4.010 1.897 -4.670 -2.517 D 19 17 3 20 3 0 13 125 213 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 17 128 215 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 78 - G - - MR 21 20 3 23 3 1 16 127 214 -9.633 -0.008 -7.950 -3.891 -5.375 1.952 -4.627 D 22 20 3 23 3 0 12 125 212 -6.878 -0.923 -1.108 IR 23 23 3 23 3 1 16 127 214 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 77 - U - - MR 24 23 3 26 3 1 16 126 213 -9.661 -0.008 -7.979 -1.473 -0.260 -2.660 1.404 D 25 23 3 26 3 0 11 123 211 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 15 126 213 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 76 - C - - MR 27 26 3 29 3 1 15 125 212 -9.661 -0.008 -7.979 -3.476 1.813 -4.278 -1.532 D 28 26 3 29 3 0 11 122 210 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 14 125 212 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 75 - U - - MR 30 29 3 32 3 1 14 124 211 -9.661 -0.008 -7.979 -2.643 -2.533 -2.670 1.811 D 31 29 3 32 3 0 10 121 209 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 13 124 211 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 74 - G - - MR 33 32 3 35 3 1 13 123 210 -9.661 -0.008 -7.979 -2.027 -4.354 1.861 -3.791 D 34 32 3 35 3 0 10 120 208 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 123 210 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 73 - G - - MR 36 35 3 38 3 1 12 122 209 -9.661 -0.008 -7.979 -3.930 -5.418 1.953 -4.665 D 37 35 3 38 3 0 10 120 207 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 12 122 209 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 72 - G - - MR 39 38 3 41 3 1 11 121 208 -9.661 -0.545 -1.673 -3.930 -5.418 1.953 -4.665 D 40 38 3 41 3 0 9 119 207 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 12 121 209 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 71 - G - - MR 42 41 3 44 3 1 11 120 208 -9.127 -0.011 -7.444 -3.133 -4.534 1.916 -3.875 D 43 41 3 44 3 0 9 118 206 -9.274 -4.452 -0.070 IR 44 44 3 44 3 1 11 120 208 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 70 - A - - MR 45 44 3 47 3 1 10 119 207 -9.127 -0.011 -7.444 1.566 -2.535 -0.647 -2.133 D 46 44 3 47 3 0 9 118 206 -9.274 -0.136 -3.504 IR 47 47 3 47 3 1 10 119 207 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 69 - A - - MR 48 47 3 50 3 1 9 118 206 -9.661 -0.237 -2.737 1.890 -4.015 -2.650 -3.810 D 49 47 3 50 3 0 7 116 204 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 10 119 206 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 68 - c - - MR 51 50 3 53 3 1 9 117 205 -9.433 -0.009 -7.751 -1.404 0.908 0.406 -1.248 D 52 50 3 53 3 0 6 116 204 -8.393 -0.400 -2.063 IR 53 53 3 53 3 1 8 118 205 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 67 - C - - MR 54 53 3 56 3 1 8 116 204 -9.639 -0.037 -5.390 -4.468 1.941 -5.076 -3.540 D 55 53 3 56 3 0 5 115 202 -6.778 -1.018 -1.008 IR 56 56 3 56 3 1 8 117 204 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 66 - A - - MR 57 56 3 59 3 1 7 115 203 -9.633 -0.008 -7.950 1.953 -4.830 -4.285 -4.547 D 58 56 3 59 3 0 4 114 201 -6.878 -0.923 -1.108 IR 59 59 3 59 3 1 7 116 203 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 65 - A - - MR 60 59 3 62 3 1 6 114 202 -9.661 -0.008 -7.979 1.893 -3.798 -3.659 -2.880 D 61 59 3 62 3 0 3 112 200 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 6 115 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 64 - c - - MR 63 62 3 65 3 1 5 113 201 -9.661 -0.141 -3.445 -2.153 0.947 -3.095 0.791 D 64 62 3 65 3 0 3 112 199 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 6 114 201 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 63 - G - - MR 66 65 3 68 3 1 5 112 200 -9.529 -0.008 -7.846 -2.161 -2.990 1.822 -3.109 D 67 65 3 68 3 0 2 111 199 -7.881 -0.388 -2.111 IR 68 68 3 68 3 1 4 113 200 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 62 - U - - MR 69 68 3 71 3 1 4 111 199 -9.661 -0.008 -7.979 -0.504 -0.947 -1.764 1.311 D 70 68 3 71 3 0 1 109 197 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 4 112 199 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 61 - c - - MR 72 71 3 74 3 1 3 110 198 -9.661 -0.008 -7.979 -2.149 0.875 -3.080 0.866 D 73 71 3 74 3 0 1 108 196 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 3 111 198 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 60 - U - - MR 75 74 3 77 3 1 2 109 197 -4.085 -0.759 -1.514 -0.396 -0.825 -2.160 1.294 D 76 74 3 77 3 0 0 108 195 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 4 110 198 -1.691 -0.603 -4.965 0.000 0.000 0.000 0.000 [ MATR 26 ] - 57 - a - - MR 78 77 3 80 3 1 3 109 197 -9.048 -0.110 -3.799 0.629 -0.888 -0.623 0.338 D 79 77 3 80 3 0 0 107 195 -9.414 -4.592 -0.063 IR 80 80 3 80 3 1 3 109 197 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 56 - c - - MR 81 80 3 83 3 1 3 108 196 -8.950 -0.012 -7.268 -0.731 0.740 -0.509 0.035 D 82 80 3 83 3 0 0 107 194 -9.563 -0.170 -3.187 IR 83 83 3 83 3 1 1 108 196 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 55 - G - - MR 84 83 3 86 3 1 3 107 195 -9.637 -0.008 -7.955 -1.518 -1.117 1.452 -1.139 D 85 83 3 86 3 0 0 105 193 -6.812 -0.984 -1.042 IR 86 86 3 86 3 1 1 107 195 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 54 - c - - MR 87 86 3 89 3 1 2 106 194 -9.661 -0.008 -7.979 -0.050 0.588 -1.941 0.345 D 88 86 3 89 3 0 0 104 191 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 106 194 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 53 - C - - MR 90 89 3 92 3 1 1 105 193 -9.661 -0.039 -5.285 -2.237 1.213 -3.212 0.445 D 91 89 3 92 3 0 0 103 191 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 105 193 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 52 - U - - MR 93 92 3 95 3 1 2 104 192 -9.630 -0.008 -7.947 -2.337 -2.674 -3.549 1.832 D 94 92 3 95 3 0 0 102 190 -6.923 -0.884 -1.153 IR 95 95 3 95 3 1 1 104 192 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 51 - U - - MR 96 95 3 98 3 1 1 103 191 -9.661 -0.008 -7.979 -2.880 -1.641 -3.622 1.792 D 97 95 3 98 3 0 0 101 188 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 103 191 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 50 - a - - MR 99 98 3 101 3 1 1 102 190 -9.661 -0.008 -7.979 0.782 -0.635 -0.699 0.029 D 100 98 3 101 3 0 0 100 187 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 102 190 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 49 - U - - MR 102 101 3 104 3 1 1 101 189 -9.661 -0.008 -7.979 -0.541 0.042 -2.094 1.035 D 103 101 3 104 3 0 0 99 187 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 101 189 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 48 - u - - MR 105 104 3 107 3 1 1 100 188 -9.661 -0.008 -7.979 -0.923 0.156 -0.714 0.806 D 106 104 3 107 3 0 0 98 186 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 100 188 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 47 - c - - MR 108 107 3 110 3 1 1 99 187 -9.661 -0.072 -4.393 -1.159 0.601 -0.665 0.490 D 109 107 3 110 3 0 0 98 185 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 100 187 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 46 - c - - MR 111 110 3 113 3 1 1 98 186 -9.597 -0.529 -1.710 0.050 0.486 -0.997 0.088 D 112 110 3 113 3 0 0 97 185 -7.315 -0.619 -1.545 IR 113 113 3 113 3 1 1 99 186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 45 - C - - MR 114 113 3 116 5 1 1 97 185 -7.867 -0.202 -7.683 -3.067 -8.787 -1.074 1.045 -0.832 -0.152 D 115 113 3 116 5 0 0 96 184 -7.466 -0.135 -5.093 -6.524 -4.518 IR 116 116 3 116 5 1 1 98 185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 1 44 C G - - MP 117 116 3 121 6 2 2 97 184 -9.745 -9.684 -0.014 -8.460 -8.740 -9.135 -7.185 -7.312 -6.360 -3.523 -4.739 -6.428 3.925 -5.889 -6.670 -3.483 -6.457 -5.467 -1.672 -7.093 -2.693 -5.473 ML 118 116 3 121 6 1 1 94 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 95 183 -8.038 -2.387 -1.024 -6.745 -1.879 -4.959 -0.083 0.057 0.085 -0.066 D 120 116 3 121 6 0 0 89 177 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 96 183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 96 184 -1.456 -0.809 -6.582 -4.750 -5.856 0.000 0.000 0.000 0.000 [ MATP 40 ] 2 40 C G - - MP 123 122 6 127 6 2 2 95 182 -9.828 -9.767 -0.013 -8.544 -8.824 -9.219 -5.209 -5.167 -4.956 -1.234 -3.637 -5.427 3.549 -4.423 -1.497 -1.068 -5.284 -3.053 0.778 -5.282 -0.252 -3.756 ML 124 122 6 127 6 1 1 92 180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 92 180 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 87 175 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 94 181 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 94 181 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 3 39 C G - - MP 129 128 6 133 6 2 2 93 180 -9.828 -9.767 -0.013 -8.544 -8.824 -9.219 -5.237 -5.131 -4.982 -0.176 -3.637 -5.470 3.426 -4.418 -4.957 -0.941 -5.297 -2.922 1.534 -5.309 -1.244 -3.736 ML 130 128 6 133 6 1 1 90 178 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 90 178 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 86 173 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 92 179 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 92 179 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 4 38 C G - - MP 135 134 6 139 6 2 2 91 178 -9.828 -9.767 -0.013 -8.544 -8.824 -9.219 -5.906 -6.005 -5.384 -2.111 -3.830 -5.638 3.637 -4.703 -5.440 -2.000 -5.637 -4.066 1.242 -5.834 -1.502 -4.231 ML 136 134 6 139 6 1 1 88 176 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 88 176 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 84 171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 90 177 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 90 177 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 5 37 G C - - MP 141 140 6 145 6 2 2 89 176 -9.828 -9.767 -0.013 -8.544 -8.824 -9.219 -4.610 -3.180 -4.494 1.618 -5.529 -4.981 -0.094 -5.076 -4.685 3.357 -4.977 -0.810 -0.929 -4.341 -2.664 -3.426 ML 142 140 6 145 6 1 1 86 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 86 174 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 82 169 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 88 175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 88 175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 6 36 c g - - MP 147 146 6 151 6 2 2 87 174 -9.828 -9.767 -0.013 -8.544 -8.824 -9.219 -3.903 -3.777 -3.959 0.695 -3.101 -4.783 2.401 -3.703 -3.892 0.597 -4.413 -1.601 2.242 -4.134 0.826 -2.744 ML 148 146 6 151 6 1 1 84 172 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 84 172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 80 168 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 86 173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 86 173 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 7 35 a u - - MP 153 152 6 157 6 2 2 85 172 -9.828 -9.767 -0.013 -8.544 -8.824 -9.219 -3.233 -1.973 -3.291 2.505 -3.592 -4.061 0.839 -3.722 -1.148 2.204 -3.930 0.024 0.077 -3.331 -1.439 -2.399 ML 154 152 6 157 6 1 1 82 170 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 82 169 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 79 166 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 84 171 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 84 171 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 8 34 c g - - MP 159 158 6 163 4 2 2 83 170 -1.473 -8.587 -0.710 -5.277 -4.367 -4.174 -4.340 -0.201 -3.315 -5.078 2.931 -3.972 -4.275 1.563 -4.748 -1.923 1.212 -4.542 0.458 -3.075 ML 160 158 6 163 4 1 1 80 167 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 79 167 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 78 166 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 84 171 -0.437 -6.600 -3.940 -2.429 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 79 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 16 - g - - - ML 165 164 6 167 3 1 1 78 165 -8.811 -0.011 -7.465 0.250 -0.776 0.437 -0.196 D 166 164 6 167 3 0 0 77 165 -9.208 -3.254 -0.162 IL 167 167 3 167 3 1 1 79 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 17 - c - - - ML 168 167 3 170 3 1 1 77 164 -8.858 -0.011 -7.512 0.106 0.537 -1.139 0.027 D 169 167 3 170 3 0 0 77 165 -9.108 -3.086 -0.184 IL 170 170 3 170 3 1 1 78 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 18 - u - - - ML 171 170 3 173 3 1 1 76 163 -0.948 -2.010 -2.099 0.248 -0.118 -0.913 0.444 D 172 170 3 173 3 0 0 77 165 -0.217 -4.506 -3.384 IL 173 173 3 173 3 1 1 78 166 -0.303 -2.817 -4.390 0.000 0.000 0.000 0.000 [ MATL 50 ] 33 - a - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 0.994 -1.112 -0.426 -0.320 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME ClpQY_promoter ACC RF02401 DESC ClpQY promoter LENG 58 MAXL 165 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 20:00:40 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 39 EFFN 13.011108 CKSUM 2191801421 STATS LOCAL MSV -7.5360 0.71931 STATS LOCAL VITERBI -8.5890 0.71931 STATS LOCAL FORWARD -3.7610 0.71931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.75129 1.26548 1.23024 1.37784 1.38629 1.38629 1.38629 1.38629 0.11200 5.13587 2.30187 1.46634 0.26236 0.00000 * 1 5.06022 0.03013 5.13796 4.04759 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.01307 5.03694 5.03694 1.46634 0.26236 0.11114 2.25199 2 4.05814 0.22113 3.12592 1.98627 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 3 2.96032 0.31594 3.67827 1.64077 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 4 4.44790 0.20030 4.35885 1.85138 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 5 1.57119 2.88685 0.35825 3.28197 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 6 2.26399 1.05522 2.27747 0.80877 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 7 0.81250 2.25661 0.95799 2.68992 7 a - - < 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 8 3.13124 0.64050 1.56926 1.50911 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.47691 1.03672 3.70155 1.29361 0.32059 1.09861 0.40547 9 1.21869 1.98154 1.01201 1.59436 16 g - - _ 1.38629 1.38629 1.38629 1.38629 0.35460 5.11688 1.22912 1.46634 0.26236 1.82403 0.17599 10 1.32777 0.92919 2.29707 1.42918 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01695 4.77923 4.77923 1.46634 0.26236 0.03774 3.29581 11 1.20726 1.45347 2.09527 1.06656 18 u - - _ 1.38629 1.38629 1.38629 1.38629 1.17428 0.68908 1.66642 1.97369 0.14959 1.09861 0.40547 12 0.62950 2.30094 1.69966 1.69157 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01450 4.93370 4.93370 1.46634 0.26236 0.06041 2.83671 13 2.00836 1.61554 0.49221 2.88719 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 14 2.48133 1.18505 2.14359 0.70643 35 u - - > 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 15 1.11761 2.41575 0.77010 2.11469 36 g - - > 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 16 3.50548 0.39011 2.76676 1.46917 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 17 1.92432 4.42639 0.19077 4.15122 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 18 1.71213 3.78189 0.30408 2.83130 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 19 2.12659 3.92024 0.17940 3.68297 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04595 3.24342 5.13587 1.14049 0.38517 1.09861 0.40547 20 3.48689 3.52401 0.08830 3.71165 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.40090 5.13587 1.12577 1.46634 0.26236 1.09861 0.40547 21 2.48951 0.55090 1.98595 1.59274 45 C - - : 1.38629 1.38629 1.38629 1.38629 0.09210 4.75238 2.53386 1.46634 0.26236 0.03562 3.35257 22 1.37082 0.98023 2.15183 1.36805 46 c - - : 1.38629 1.38629 1.38629 1.38629 0.01244 5.08647 5.08647 1.46634 0.26236 0.19683 1.72221 23 2.57105 0.88928 1.84758 1.03571 47 c - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 24 2.28735 1.23132 1.88986 0.78644 48 u - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 25 1.85391 1.32958 3.22460 0.61801 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 26 0.79782 1.86644 1.91083 1.39813 50 a - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 27 3.83192 2.61946 4.34160 0.11376 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.03638 5.13587 3.51185 1.46634 0.26236 1.09861 0.40547 28 3.21693 3.62419 4.24537 0.08456 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.01213 5.11161 5.11161 1.46634 0.26236 0.33233 1.26320 29 3.45624 0.49541 4.17335 1.06790 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 30 1.44545 0.90747 3.10119 1.15259 54 c - - : 1.38629 1.38629 1.38629 1.38629 0.03045 5.13587 3.72529 1.46634 0.26236 1.09861 0.40547 31 2.80988 2.16539 0.32092 2.30661 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.56452 5.11747 0.85478 1.46634 0.26236 1.80801 0.17910 32 2.16620 0.75454 1.73581 1.43169 56 c - - : 1.38629 1.38629 1.38629 1.38629 0.02085 4.57381 4.57381 1.46634 0.26236 2.12603 0.12705 33 0.90788 2.12275 1.85679 1.13710 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.13041 2.18264 4.65388 0.55195 0.85762 0.02984 3.52665 34 1.71097 2.04802 3.28688 0.42625 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 35 3.42454 0.72932 4.11344 0.75747 61 c - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 36 1.79944 2.14773 2.81881 0.41827 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.11520 5.13587 2.27372 1.46634 0.26236 1.09861 0.40547 37 3.14547 3.58798 0.09466 3.93139 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.01311 5.03378 5.03378 1.46634 0.26236 0.10822 2.27722 38 3.42069 0.67884 4.11791 0.81232 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 39 0.05307 4.48548 4.43361 3.55635 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03390 5.13587 3.59530 1.46634 0.26236 1.09861 0.40547 40 0.01801 5.35021 4.94782 5.11499 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.02937 5.11406 3.77511 1.46634 0.26236 0.35664 1.20406 41 4.99586 0.02449 5.34391 4.37008 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.17339 5.11917 1.87596 1.46634 0.26236 1.76045 0.18870 42 2.96461 0.63553 1.02482 2.81508 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.01413 4.95991 4.95991 1.46634 0.26236 0.06798 2.72231 43 0.05472 4.67527 3.40041 4.55026 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.43675 5.13587 1.05560 1.46634 0.26236 1.09861 0.40547 44 0.24508 3.66146 1.83013 3.46510 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.01804 4.71716 4.71716 1.46634 0.26236 4.11351 0.01649 45 4.10882 5.14025 0.03268 4.61842 71 G - - : 1.38629 1.38629 1.38629 1.38629 0.01804 4.71716 4.71716 1.46634 0.26236 0.03325 3.42037 46 4.60659 5.71248 0.01948 5.11590 72 G - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 47 4.60659 5.71248 0.01948 5.11590 73 G - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 48 2.90290 4.93573 0.07578 4.51578 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 49 3.61939 3.51934 3.37089 0.09517 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 50 4.33782 0.10195 4.82829 2.57883 76 C - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 51 2.66550 1.56409 3.70409 0.36164 77 U - - : 1.38629 1.38629 1.38629 1.38629 0.03390 5.13587 3.59530 1.46634 0.26236 1.09861 0.40547 52 4.58276 5.68488 0.01997 5.09180 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11406 5.11406 1.46634 0.26236 0.35664 1.20406 53 4.66317 0.05140 5.03237 3.37713 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 54 3.68496 1.76488 4.22053 0.23698 80 U - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 55 5.01447 0.02403 5.36058 4.38935 81 C - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 56 4.60659 5.71248 0.01948 5.11590 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 57 4.73061 4.43592 5.29775 0.02600 83 U - - : 1.38629 1.38629 1.38629 1.38629 0.01183 5.13587 5.13587 1.46634 0.26236 1.09861 0.40547 58 4.60659 5.71248 0.01948 5.11590 84 G - - : 1.38629 1.38629 1.38629 1.38629 0.00593 5.12997 * 1.46634 0.26236 0.00000 * //