INFERNAL1/a [1.1.5 | Sep 2023] NAME ClpQY_promoter ACC RF02401 DESC ClpQY promoter STATES 175 NODES 51 CLEN 57 W 126 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 20:09:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02401/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 7.679077 CKSUM 2191801421 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.40 NC 41.00 EFP7GF -12.9947 0.71936 ECMLC 0.55853 -11.72034 -0.18426 1600000 754147 0.001591 ECMGC 0.36998 -21.98022 -6.55350 1600000 120452 0.003321 ECMLI 0.57972 -9.91722 0.78581 1600000 594096 0.002020 ECMGI 0.38684 -17.11941 -3.35870 1600000 82017 0.004877 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 126 207 -8.186 -9.432 -0.032 -5.885 IL 1 1 2 1 4 1 17 127 208 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 127 208 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 84 - G - - MR 3 2 3 5 3 1 19 126 207 -9.628 -0.008 -7.946 -3.885 -5.367 1.951 -4.621 D 4 2 3 5 3 0 14 124 205 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 18 126 207 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 83 - U - - MR 6 5 3 8 3 1 18 125 206 -9.628 -0.008 -7.946 -3.853 -3.510 -4.647 1.927 D 7 5 3 8 3 0 13 123 204 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 17 125 206 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 82 - G - - MR 9 8 3 11 3 1 18 124 205 -9.628 -0.008 -7.946 -3.885 -5.367 1.951 -4.621 D 10 8 3 11 3 0 13 122 203 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 16 125 205 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 81 - C - - MR 12 11 3 14 3 1 17 123 204 -9.628 -0.008 -7.946 -4.451 1.940 -5.063 -3.523 D 13 11 3 14 3 0 12 121 202 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 124 204 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 80 - U - - MR 15 14 3 17 3 1 16 122 203 -9.628 -0.008 -7.946 -2.427 -0.342 -3.215 1.545 D 16 14 3 17 3 0 11 120 201 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 123 203 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 79 - C - - MR 18 17 3 20 3 1 15 121 202 -9.628 -0.044 -5.128 -3.877 1.883 -4.566 -2.314 D 19 17 3 20 3 0 11 119 200 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 15 122 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 78 - G - - MR 21 20 3 23 3 1 15 120 201 -9.592 -0.008 -7.910 -3.836 -5.313 1.950 -4.573 D 22 20 3 23 3 0 10 118 199 -6.969 -0.845 -1.199 IR 23 23 3 23 3 1 14 121 201 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 77 - U - - MR 24 23 3 26 3 1 14 119 200 -9.628 -0.008 -7.946 -1.380 -0.473 -2.627 1.451 D 25 23 3 26 3 0 9 117 198 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 13 120 200 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 76 - C - - MR 27 26 3 29 3 1 13 118 199 -9.628 -0.008 -7.946 -3.588 1.839 -4.353 -1.780 D 28 26 3 29 3 0 9 116 197 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 12 119 199 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 75 - U - - MR 30 29 3 32 3 1 12 117 198 -9.628 -0.008 -7.946 -2.570 -2.476 -2.502 1.797 D 31 29 3 32 3 0 8 115 196 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 11 118 198 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 74 - G - - MR 33 32 3 35 3 1 11 116 197 -9.628 -0.008 -7.946 -2.237 -4.458 1.877 -3.878 D 34 32 3 35 3 0 8 114 195 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 117 197 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 73 - G - - MR 36 35 3 38 3 1 10 115 196 -9.628 -0.008 -7.946 -3.885 -5.367 1.951 -4.621 D 37 35 3 38 3 0 7 113 194 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 10 116 196 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 72 - G - - MR 39 38 3 41 3 1 9 114 195 -9.628 -0.395 -2.070 -3.885 -5.367 1.951 -4.621 D 40 38 3 41 3 0 7 113 193 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 10 115 196 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 71 - G - - MR 42 41 3 44 3 1 9 114 195 -9.243 -0.010 -7.561 -3.323 -4.742 1.927 -4.065 D 43 41 3 44 3 0 7 112 193 -8.905 -4.083 -0.091 IR 44 44 3 44 3 1 9 114 195 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 70 - A - - MR 45 44 3 47 3 1 8 113 194 -9.243 -0.010 -7.561 1.643 -2.774 -0.879 -2.420 D 46 44 3 47 3 0 6 112 192 -8.905 -0.178 -3.135 IR 47 47 3 47 3 1 8 113 194 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 69 - A - - MR 48 47 3 50 3 1 7 112 193 -9.628 -0.278 -2.522 1.873 -3.864 -2.403 -3.655 D 49 47 3 50 3 0 5 110 191 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 8 112 193 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 68 - C - - MR 51 50 3 53 3 1 7 111 192 -9.359 -0.009 -7.677 -1.528 1.193 -0.087 -1.231 D 52 50 3 53 3 0 4 110 190 -8.536 -0.377 -2.136 IR 53 53 3 53 3 1 6 111 192 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 67 - C - - MR 54 53 3 56 3 1 6 110 191 -9.602 -0.045 -5.102 -4.414 1.939 -5.032 -3.486 D 55 53 3 56 3 0 3 108 189 -6.829 -0.968 -1.059 IR 56 56 3 56 3 1 6 110 191 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 66 - A - - MR 57 56 3 59 3 1 6 109 190 -9.592 -0.008 -7.910 1.950 -4.765 -4.222 -4.483 D 58 56 3 59 3 0 2 107 188 -6.969 -0.845 -1.199 IR 59 59 3 59 3 1 5 109 190 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 65 - A - - MR 60 59 3 62 3 1 5 108 189 -9.628 -0.008 -7.946 1.875 -3.611 -3.514 -2.626 D 61 59 3 62 3 0 1 106 187 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 4 108 189 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 64 - u - - MR 63 62 3 65 3 1 4 107 188 -9.628 -0.101 -3.919 -2.110 0.754 -3.020 0.970 D 64 62 3 65 3 0 0 105 186 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 4 107 188 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 63 - G - - MR 66 65 3 68 3 1 4 106 187 -9.536 -0.008 -7.853 -1.987 -2.776 1.796 -2.949 D 67 65 3 68 3 0 0 105 185 -7.559 -0.503 -1.789 IR 68 68 3 68 3 1 3 106 187 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 62 - U - - MR 69 68 3 71 3 1 3 105 186 -9.628 -0.008 -7.946 -0.334 -0.838 -1.555 1.206 D 70 68 3 71 3 0 0 103 184 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 2 105 186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 61 - u - - MR 72 71 3 74 3 1 2 104 185 -9.628 -0.008 -7.946 -2.111 0.747 -3.020 0.976 D 73 71 3 74 3 0 0 102 183 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 2 104 185 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 60 - U - - MR 75 74 3 77 3 1 1 103 184 -4.334 -0.663 -1.649 -0.258 -1.036 -2.110 1.290 D 76 74 3 77 3 0 0 101 182 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 2 104 185 -1.777 -0.572 -4.822 0.000 0.000 0.000 0.000 [ MATR 26 ] - 57 - a - - MR 78 77 3 80 3 1 1 103 183 -9.082 -0.117 -3.722 0.724 -0.881 -0.694 0.247 D 79 77 3 80 3 0 0 100 181 -9.266 -4.444 -0.070 IR 80 80 3 80 3 1 1 103 184 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 56 - c - - MR 81 80 3 83 3 1 1 102 182 -8.978 -0.012 -7.296 -0.852 0.868 -0.868 0.101 D 82 80 3 83 3 0 0 100 181 -9.444 -0.196 -2.994 IR 83 83 3 83 3 1 1 102 183 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 55 - G - - MR 84 83 3 86 3 1 1 101 181 -9.600 -0.008 -7.917 -1.565 -1.379 1.510 -1.223 D 85 83 3 86 3 0 0 99 180 -6.867 -0.933 -1.097 IR 86 86 3 86 3 1 1 101 182 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 54 - u - - MR 87 86 3 89 3 1 1 100 180 -9.628 -0.008 -7.946 -0.139 0.457 -1.901 0.538 D 88 86 3 89 3 0 0 97 178 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 100 181 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 53 - C - - MR 90 89 3 92 3 1 1 99 179 -9.628 -0.048 -4.996 -2.211 1.232 -3.184 0.406 D 91 89 3 92 3 0 0 97 177 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 99 180 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 52 - U - - MR 93 92 3 95 3 1 1 98 179 -9.588 -0.008 -7.906 -2.173 -2.586 -3.443 1.815 D 94 92 3 95 3 0 0 96 177 -7.022 -0.805 -1.251 IR 95 95 3 95 3 1 1 98 179 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 51 - U - - MR 96 95 3 98 3 1 1 97 178 -9.628 -0.008 -7.946 -2.776 -1.430 -3.521 1.764 D 97 95 3 98 3 0 0 94 175 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 97 178 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 50 - a - - MR 99 98 3 101 3 1 1 96 177 -9.628 -0.008 -7.946 0.826 -0.765 -0.690 0.027 D 100 98 3 101 3 0 0 93 174 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 96 177 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 49 - U - - MR 102 101 3 104 3 1 1 95 176 -9.628 -0.008 -7.946 -0.469 -0.283 -2.063 1.148 D 103 101 3 104 3 0 0 93 173 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 95 176 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 48 - u - - MR 105 104 3 107 3 1 1 94 175 -9.628 -0.008 -7.946 -0.794 0.213 -0.483 0.631 D 106 104 3 107 3 0 0 92 173 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 94 175 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 47 - c - - MR 108 107 3 110 3 1 1 93 174 -9.628 -0.089 -4.096 -1.090 0.543 -0.540 0.470 D 109 107 3 110 3 0 0 91 172 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 93 174 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 46 - c - - MR 111 110 3 113 3 1 1 92 173 -9.547 -0.452 -1.902 -0.102 0.597 -1.195 0.162 D 112 110 3 113 3 0 0 91 172 -7.457 -0.548 -1.687 IR 113 113 3 113 3 1 1 92 173 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 45 - C - - MR 114 113 3 116 5 1 1 91 172 -7.910 -0.208 -7.726 -3.024 -8.829 -1.259 1.170 -1.274 -0.122 D 115 113 3 116 5 0 0 90 171 -7.282 -0.155 -4.908 -6.339 -4.333 IR 116 116 3 116 5 1 1 91 172 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 1 44 C G - - MP 117 116 3 121 6 2 2 90 171 -9.716 -9.655 -0.014 -8.432 -8.711 -9.106 -7.096 -7.217 -6.292 -3.423 -4.676 -6.372 3.920 -5.807 -6.585 -3.379 -6.398 -5.360 -1.587 -7.007 -2.613 -5.387 ML 118 116 3 121 6 1 1 88 169 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 89 170 -8.084 -2.785 -0.868 -6.792 -1.925 -5.005 -0.114 0.204 -0.050 -0.061 D 120 116 3 121 6 0 0 83 164 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 89 170 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 90 170 -1.569 -0.756 -6.456 -4.624 -5.730 0.000 0.000 0.000 0.000 [ MATP 40 ] 2 40 C G - - MP 123 122 6 127 6 2 2 88 169 -9.806 -9.745 -0.013 -8.522 -8.802 -9.197 -5.056 -5.004 -4.841 -1.078 -3.568 -5.347 3.503 -4.337 -1.415 -0.910 -5.183 -2.883 0.921 -5.149 -0.211 -3.640 ML 124 122 6 127 6 1 1 86 167 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 86 166 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 81 162 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 87 168 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 87 168 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 3 39 C G - - MP 129 128 6 133 6 2 2 86 167 -9.806 -9.745 -0.013 -8.522 -8.802 -9.197 -5.444 -5.386 -5.103 -0.454 -3.686 -5.511 3.558 -4.499 -5.105 -1.245 -5.397 -3.237 1.139 -5.473 -1.316 -3.887 ML 130 128 6 133 6 1 1 84 165 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 84 164 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 79 160 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 85 166 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 85 166 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 4 38 C G - - MP 135 134 6 139 6 2 2 84 165 -9.806 -9.745 -0.013 -8.522 -8.802 -9.197 -5.853 -5.944 -5.340 -2.047 -3.792 -5.601 3.626 -4.663 -5.394 -1.933 -5.594 -3.995 1.270 -5.786 -1.462 -4.185 ML 136 134 6 139 6 1 1 82 163 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 81 162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 77 158 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 83 164 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 83 164 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 5 37 G C - - MP 141 140 6 145 6 2 2 82 163 -9.806 -9.745 -0.013 -8.522 -8.802 -9.197 -4.581 -3.153 -4.462 1.504 -5.473 -4.938 0.036 -5.046 -4.659 3.372 -4.947 -0.788 -0.881 -4.302 -2.614 -3.397 ML 142 140 6 145 6 1 1 80 161 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 79 160 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 74 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 81 162 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 81 162 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 6 36 c g - - MP 147 146 6 151 6 2 2 80 161 -9.806 -9.745 -0.013 -8.522 -8.802 -9.197 -3.919 -3.781 -3.972 0.623 -3.093 -4.796 2.513 -3.699 -3.899 0.675 -4.419 -1.587 2.181 -4.147 0.620 -2.742 ML 148 146 6 151 6 1 1 77 158 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 77 158 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 72 153 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 79 160 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 79 160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 7 35 a u - - MP 153 152 6 157 6 2 2 78 159 -9.806 -9.745 -0.013 -8.522 -8.802 -9.197 -3.162 -1.827 -3.228 2.470 -3.512 -4.001 0.828 -3.655 -0.888 2.216 -3.867 -0.106 0.121 -3.273 -1.383 -2.344 ML 154 152 6 157 6 1 1 75 155 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 74 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 69 150 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 77 158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 77 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 8 34 C G - - MP 159 158 6 163 4 2 2 76 157 -1.890 -1.540 -1.403 -6.966 -4.452 -4.274 -4.402 -0.294 -3.334 -5.111 3.029 -4.008 -4.340 1.365 -4.799 -2.027 1.055 -4.619 0.631 -3.138 ML 160 158 6 163 4 1 1 69 150 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 67 148 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 66 147 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 79 159 -0.479 -2.028 -4.853 -8.591 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 74 154 -0.329 -2.908 -3.826 0.000 0.000 0.000 0.000 [ MATL 47 ] 16 - g - - - ML 165 164 6 167 3 1 1 14 33 -8.914 -0.011 -7.568 0.226 -0.757 0.458 -0.209 D 166 164 6 167 3 0 0 13 31 -8.853 -2.850 -0.219 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 17 - c - - - ML 168 167 3 170 3 1 1 12 31 -8.960 -0.010 -7.614 0.194 0.473 -1.109 0.006 D 169 167 3 170 3 0 0 12 30 -8.716 -2.985 -0.199 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 18 - u - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 0.229 -0.052 -0.920 0.417 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ClpQY_promoter ACC RF02401 DESC ClpQY promoter LENG 57 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 20:09:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02401/CM NSEQ 39 EFFN 12.335083 CKSUM 2191801421 STATS LOCAL MSV -7.6034 0.71936 STATS LOCAL VITERBI -8.5259 0.71936 STATS LOCAL FORWARD -3.7021 0.71936 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.78081 1.25431 1.22075 1.38144 1.38629 1.38629 1.38629 1.38629 0.12186 5.09003 2.22033 1.46634 0.26236 0.00000 * 1 4.99007 0.03277 5.05977 3.95877 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.01382 4.98198 4.98198 1.46634 0.26236 0.10745 2.28400 2 3.91950 0.24823 3.02113 1.88900 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 3 3.14743 0.23486 3.86279 1.92862 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 4 4.38565 0.20732 4.29061 1.82579 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 5 1.65924 2.77014 0.34623 3.22613 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 6 2.31865 0.96524 2.20516 0.89046 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 7 0.83453 2.26642 0.94077 2.63232 7 a - - < 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 8 3.20314 0.57094 1.72313 1.53311 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.33069 1.35518 3.74344 1.26018 0.33352 1.09861 0.40547 9 1.23706 1.95918 1.00212 1.60102 16 g - - _ 1.38629 1.38629 1.38629 1.38629 0.25037 5.07236 1.53611 1.46634 0.26236 1.76547 0.18766 10 1.25434 0.98330 2.26195 1.44174 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01597 4.83796 4.83796 1.46634 0.26236 0.05239 2.97508 11 1.22403 1.40025 2.09570 1.08934 18 u - - _ 1.38629 1.38629 1.38629 1.38629 1.04107 0.44509 5.09003 1.64728 0.21390 1.09861 0.40547 12 2.15420 1.77264 0.41209 2.95936 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 13 2.36699 1.15588 2.14588 0.74551 35 u - - > 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 14 1.16757 2.33809 0.74104 2.15632 36 g - - > 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 15 3.45091 0.37897 2.65703 1.54382 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 16 1.90089 4.36067 0.19719 4.08856 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 17 2.01700 3.94290 0.22550 3.00711 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 18 2.01660 3.78293 0.20388 3.55527 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03928 3.43081 5.09003 1.15208 0.37977 1.09861 0.40547 19 3.42069 3.33100 0.09997 3.62346 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.33851 5.09003 1.26936 1.46634 0.26236 1.09861 0.40547 20 2.61515 0.47988 2.34354 1.55117 45 C - - : 1.38629 1.38629 1.38629 1.38629 0.10517 4.76865 2.39318 1.46634 0.26236 0.04289 3.17041 21 1.49386 0.90162 2.31925 1.30476 46 c - - : 1.38629 1.38629 1.38629 1.38629 0.01319 5.02807 5.02807 1.46634 0.26236 0.17054 1.85285 22 2.48851 0.93191 1.74996 1.05158 47 c - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 23 2.15722 1.18599 1.70568 0.92316 48 u - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 24 1.78357 1.59083 3.17340 0.53385 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 25 0.76667 1.97671 1.90220 1.39562 50 a - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 26 3.75138 2.44960 4.26281 0.13227 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.04336 5.09003 3.31673 1.46634 0.26236 1.09861 0.40547 27 3.07770 3.54586 4.15912 0.09489 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.01278 5.05945 5.05945 1.46634 0.26236 0.29233 1.37248 28 3.40687 0.48255 4.12108 1.09835 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 29 1.51891 1.00809 3.03972 0.99889 54 u - - : 1.38629 1.38629 1.38629 1.38629 0.03438 5.09003 3.58845 1.46634 0.26236 1.09861 0.40547 30 2.81379 2.37250 0.28574 2.35055 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.51079 5.06831 0.93221 1.46634 0.26236 1.87007 0.16737 31 2.25768 0.67302 2.03329 1.36909 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.02076 4.57828 4.57828 1.46634 0.26236 1.96038 0.15176 32 0.83733 2.10520 1.91522 1.21064 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.10610 2.39447 4.66276 0.53047 0.88753 0.03421 3.39226 33 1.59640 2.23767 3.22665 0.42928 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 34 3.37567 0.82004 4.04505 0.67751 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 35 1.66205 2.05381 2.62497 0.49501 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.08426 5.09003 2.59497 1.46634 0.26236 1.09861 0.40547 36 2.99138 3.41482 0.11179 3.78682 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.01331 5.01908 5.01908 1.46634 0.26236 0.15271 1.95462 37 3.37476 0.81536 4.04499 0.68164 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 38 0.06371 4.32274 4.30152 3.35500 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.04021 5.09003 3.40361 1.46634 0.26236 1.09861 0.40547 39 0.01932 5.27695 4.87796 5.04860 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03325 5.06256 3.63521 1.46634 0.26236 0.31508 1.30835 40 4.94035 0.02590 5.29457 4.31251 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.20359 5.07033 1.72642 1.46634 0.26236 1.81932 0.17690 41 3.06416 0.43821 1.40277 2.77734 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.01528 4.88202 4.88202 1.46634 0.26236 0.06156 2.81832 42 0.06583 4.53930 3.19430 4.41980 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.31585 5.09003 1.32926 1.46634 0.26236 1.09861 0.40547 43 0.20275 3.79720 2.00565 3.63005 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.01675 4.79093 4.79093 1.46634 0.26236 3.80625 0.02248 44 4.20297 5.24723 0.02964 4.71162 71 G - - : 1.38629 1.38629 1.38629 1.38629 0.01675 4.79093 4.79093 1.46634 0.26236 0.04548 3.11310 45 4.55576 5.65362 0.02054 5.06455 72 G - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 46 4.55576 5.65362 0.02054 5.06455 73 G - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 47 3.07009 4.98685 0.06592 4.55201 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 48 3.55940 3.46538 3.22825 0.10463 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 49 4.38256 0.08633 4.84139 2.77549 76 C - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 50 2.55988 1.73271 3.65240 0.32857 77 U - - : 1.38629 1.38629 1.38629 1.38629 0.04021 5.09003 3.40361 1.46634 0.26236 1.09861 0.40547 51 4.52518 5.61820 0.02120 5.03370 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06256 5.06256 1.46634 0.26236 0.31508 1.30835 52 4.56033 0.05967 4.95401 3.20857 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 53 3.59494 1.61634 4.14304 0.27702 80 U - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 54 4.96264 0.02533 5.31432 4.33564 81 C - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 55 4.55576 5.65362 0.02054 5.06455 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 56 4.65940 4.37059 5.22429 0.02789 83 U - - : 1.38629 1.38629 1.38629 1.38629 0.01239 5.09003 5.09003 1.46634 0.26236 1.09861 0.40547 57 4.55576 5.65362 0.02054 5.06455 84 G - - : 1.38629 1.38629 1.38629 1.38629 0.00622 5.08385 * 1.46634 0.26236 0.00000 * //