INFERNAL1/a [1.1.5 | Sep 2023] NAME NsiR1 ACC RF02399 DESC Nitrogen stress-induced RNA 1 STATES 189 NODES 52 CLEN 60 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 20:30:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02399/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17 EFFN 4.420166 CKSUM 3201905534 NULL 0.000 0.000 0.000 0.000 GA 39.00 TC 39.00 NC 38.90 EFP7GF -13.3757 0.71922 ECMLC 0.70475 -7.31517 1.54783 1600000 619286 0.001938 ECMGC 0.42493 -17.99593 -4.27484 1600000 136206 0.002937 ECMLI 0.56966 -8.17577 2.52932 1600000 534110 0.002247 ECMGI 0.42869 -13.71226 -1.12199 1600000 88329 0.004529 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 80 104 -7.720 -7.927 -0.031 -6.341 IL 1 1 2 1 4 1 17 83 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 83 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 16 80 104 -9.045 -0.012 -7.363 -0.763 -1.643 -2.224 1.524 D 4 2 3 5 3 0 13 79 103 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 16 81 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 68 - U - - MR 6 5 3 8 3 1 15 79 103 -9.045 -0.012 -7.363 -1.129 -1.571 -1.603 1.525 D 7 5 3 8 3 0 11 77 101 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 15 80 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 67 - U - - MR 9 8 3 11 3 1 14 78 102 -9.045 -0.012 -7.363 -0.718 -0.792 -1.930 1.352 D 10 8 3 11 3 0 11 76 100 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 14 79 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 66 - U - - MR 12 11 3 14 3 1 14 77 101 -9.045 -0.012 -7.363 -2.859 -2.633 -3.636 1.856 D 13 11 3 14 3 0 10 75 99 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 13 78 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 65 - U - - MR 15 14 3 17 3 1 13 76 100 -9.045 -0.012 -7.363 -2.859 -2.633 -3.636 1.856 D 16 14 3 17 3 0 9 74 98 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 77 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 64 - U - - MR 18 17 3 20 3 1 12 75 99 -9.045 -0.012 -7.363 -2.859 -2.633 -3.636 1.856 D 19 17 3 20 3 0 9 74 97 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 12 76 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 63 - U - - MR 21 20 3 23 3 1 11 74 98 -9.045 -0.012 -7.363 -2.859 -2.633 -3.636 1.856 D 22 20 3 23 3 0 8 73 97 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 11 75 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 62 - U - - MR 24 23 3 26 3 1 10 73 97 -9.045 -0.012 -7.363 -2.859 -2.633 -3.636 1.856 D 25 23 3 26 3 0 8 72 96 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 10 74 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 61 - U - - MR 27 26 3 29 2 1 9 72 96 -9.196 -0.002 -0.051 -0.599 -1.522 1.019 D 28 26 3 29 2 0 8 71 95 -4.432 -0.068 IR 29 29 3 29 2 1 9 73 97 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 30 29 3 31 69 0 8 71 95 [ BEGL 11 ] - - - - - - S 31 30 1 32 4 0 0 25 44 -0.033 -7.274 -6.682 -7.322 [ MATP 12 ] 2 13 G C - - MP 32 31 1 36 6 2 2 25 44 -9.452 -9.391 -0.017 -8.168 -8.448 -8.843 -5.157 0.283 -5.234 -0.092 -6.175 -5.016 -1.331 -5.688 -4.765 3.617 -5.067 -1.082 -1.605 -4.760 -3.369 -4.141 ML 33 31 1 36 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 1 36 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 1 36 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 3 12 G C - - MP 38 37 6 42 6 2 2 23 42 -9.452 -9.391 -0.017 -8.168 -8.448 -8.843 -6.120 -3.776 -6.506 -0.789 -7.120 -5.201 -2.147 -6.737 -5.124 3.847 -5.387 -1.558 -2.508 -5.337 -4.285 -5.364 ML 39 37 6 42 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 4 11 U A - - MP 44 43 6 48 4 2 2 21 40 -7.720 -7.927 -0.031 -6.341 -6.172 -6.020 -5.775 -2.240 -4.389 -6.155 -0.065 -5.191 -5.768 -2.183 -6.050 -3.883 3.814 -6.208 -2.017 -4.253 ML 45 43 6 48 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 47 43 6 48 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 48 48 5 48 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 49 49 6 49 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 5 - A - - - ML 50 49 6 52 3 1 1 18 37 -8.693 -0.012 -7.347 1.903 -3.807 -3.312 -3.491 D 51 49 6 52 3 0 0 18 37 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 6 - G - - - ML 53 52 3 55 3 1 1 17 36 -8.693 -0.012 -7.347 -2.994 -4.382 1.907 -3.734 D 54 52 3 55 3 0 0 17 35 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 7 - A - - - ML 56 55 3 58 3 1 1 16 34 -8.693 -0.012 -7.347 1.903 -3.807 -3.312 -3.491 D 57 55 3 58 3 0 0 16 34 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 8 - U - - - ML 59 58 3 61 3 1 1 14 33 -8.693 -0.012 -7.347 -2.859 -2.633 -3.636 1.856 D 60 58 3 61 3 0 0 15 33 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 9 - G - - - ML 62 61 3 64 3 1 1 13 31 -8.693 -0.012 -7.347 -2.994 -4.382 1.907 -3.734 D 63 61 3 64 3 0 0 13 32 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 10 - C - - - ML 65 64 3 67 2 1 1 1 1 * 0.000 -3.438 1.881 -4.203 -2.560 D 66 64 3 67 2 0 0 0 0 * 0.000 IL 67 67 3 67 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 68 67 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 69 30 1 70 3 0 0 59 83 -8.693 -0.012 -7.347 IL 70 70 2 70 3 1 1 61 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 14 - C - - - ML 71 70 2 73 3 1 1 59 83 -8.693 -0.012 -7.347 -3.438 1.881 -4.203 -2.560 D 72 70 2 73 3 0 0 57 81 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 60 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 15 - U - - - ML 74 73 3 76 3 1 1 58 82 -8.693 -0.012 -7.347 -2.859 -2.633 -3.636 1.856 D 75 73 3 76 3 0 0 56 80 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 59 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 16 - G - - - ML 77 76 3 79 3 1 1 57 81 -8.693 -0.012 -7.347 -2.994 -4.382 1.907 -3.734 D 78 76 3 79 3 0 0 55 79 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 58 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 17 - A - - - ML 80 79 3 82 3 1 1 56 80 -8.693 -0.012 -7.347 1.583 -2.471 -0.774 -2.066 D 81 79 3 82 3 0 0 54 78 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 57 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - U - - - ML 83 82 3 85 3 1 1 55 79 -8.693 -0.012 -7.347 -1.339 -1.843 -2.553 1.658 D 84 82 3 85 3 0 0 53 77 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 56 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - a - - - ML 86 85 3 88 3 1 1 54 78 -1.551 -1.112 -2.350 0.621 -1.132 -0.938 0.569 D 87 85 3 88 3 0 0 49 73 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 54 78 -1.110 -0.941 -5.993 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - U - - - ML 89 88 3 91 3 1 1 47 66 -8.389 -0.015 -7.043 -0.819 -1.194 -0.485 1.190 D 90 88 3 91 3 0 0 46 65 -8.141 -1.224 -0.815 IL 91 91 3 91 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - a - - - ML 92 91 3 94 3 1 1 46 65 -8.539 -0.014 -7.193 0.907 -1.153 -0.857 0.168 D 93 91 3 94 3 0 0 45 64 -7.523 -0.455 -1.914 IL 94 94 3 94 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - a - - - ML 95 94 3 97 3 1 1 45 64 -4.747 -0.064 -7.347 0.550 -0.410 -0.195 -0.136 D 96 94 3 97 3 0 0 43 62 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 46 65 -1.623 -0.677 -4.323 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - a - - - ML 98 97 3 100 3 1 1 44 63 -8.693 -0.012 -7.347 0.338 0.235 -0.654 -0.116 D 99 97 3 100 3 0 0 43 62 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - u - - - ML 101 100 3 103 5 1 1 43 62 -3.837 -0.124 -7.563 -7.775 -8.666 0.135 -0.534 -1.007 0.777 D 102 100 3 103 5 0 0 41 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 103 103 3 103 5 1 1 44 63 -1.672 -0.685 -4.768 -6.600 -5.874 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 60 c g - - MP 104 103 3 108 6 2 2 41 60 -9.452 -9.391 -0.017 -8.168 -8.448 -8.843 -2.988 -2.989 -3.108 0.594 -1.105 -3.948 2.580 -3.080 -3.095 0.989 -3.638 -0.314 1.591 -3.264 0.210 -2.073 ML 105 103 3 108 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 3 108 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 3 108 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 32 59 C G - - MP 110 109 6 114 6 2 2 39 58 -9.452 -9.391 -0.047 -5.363 -8.448 -8.843 -6.166 -6.209 -5.557 -2.379 -4.016 -5.755 3.849 -4.999 -5.715 -2.289 -5.745 -4.241 -0.729 -6.123 -1.818 -4.520 ML 111 109 6 114 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 33 58 C G - - MP 116 115 6 120 6 2 2 37 56 -9.422 -9.361 -0.017 -8.138 -8.417 -8.812 -4.913 -4.952 -4.534 -1.094 -3.115 -4.888 3.450 -3.947 -4.571 -0.949 -4.831 -2.966 0.409 -4.921 1.073 -3.384 ML 117 115 6 120 6 1 1 36 55 -6.685 -7.031 -0.841 -1.439 -6.881 -4.410 -0.052 0.454 -0.752 0.100 MR 118 115 6 120 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 34 57 C G - - MP 122 121 6 126 6 2 2 35 54 -9.452 -9.391 -0.017 -8.168 -8.448 -8.843 -6.166 -6.209 -5.557 -2.379 -4.016 -5.755 3.849 -4.999 -5.715 -2.289 -5.745 -4.241 -0.729 -6.123 -1.818 -4.520 ML 123 121 6 126 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 35 56 c g - - MP 128 127 6 132 6 2 2 33 52 -9.452 -9.391 -0.017 -8.168 -8.448 -8.843 -3.722 -3.659 -3.726 0.104 -2.847 -4.447 2.367 -3.482 -3.703 0.803 -4.177 -1.609 1.667 -3.930 1.868 -2.593 ML 129 127 6 132 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 36 55 a u - - MP 134 133 6 138 6 2 2 31 50 -9.452 -9.391 -0.059 -8.168 -4.994 -8.843 -4.225 -3.026 -4.342 2.802 -5.519 -6.030 -1.099 -4.520 -4.122 1.359 -4.698 2.293 -1.263 -4.968 -2.992 -3.086 ML 135 133 6 138 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 37 54 G C - - MP 140 139 6 144 6 2 2 29 48 -9.410 -9.350 -0.075 -4.547 -8.406 -8.801 -4.423 -3.000 -4.352 0.774 -5.006 -4.672 0.342 -4.812 -4.379 3.453 -4.684 -0.668 -0.595 -4.147 -2.286 -3.279 ML 141 139 6 144 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 28 47 -7.492 -6.221 -0.934 -6.199 -1.333 -4.413 -0.182 -0.494 -0.801 0.876 D 143 139 6 144 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 38 53 c g - - MP 146 145 6 150 6 2 2 27 46 -9.396 -9.335 -0.077 -4.519 -8.392 -8.787 -2.517 -2.608 -2.669 1.201 -1.311 -3.511 2.344 -2.785 -2.689 0.777 -3.243 -0.909 1.547 -2.820 0.488 -0.952 ML 147 145 6 150 6 1 1 26 45 -6.966 -7.313 -0.651 -1.721 -7.162 -4.692 -0.298 -0.564 -0.930 0.989 MR 148 145 6 150 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 39 52 c g - - MP 152 151 6 156 6 2 2 25 44 -9.396 -9.335 -0.135 -8.111 -4.991 -4.291 -1.732 -1.920 -1.926 1.011 -1.877 -2.773 1.698 -2.248 -1.023 1.059 -2.555 -0.553 1.488 -0.811 0.886 -0.657 ML 153 151 6 156 6 1 1 24 43 -6.972 -7.318 -0.648 -1.727 -7.168 -4.698 -0.164 0.132 -0.866 0.549 MR 154 151 6 156 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 40 51 g c - - MP 158 157 6 162 6 2 2 23 42 -9.341 -9.280 -0.061 -4.922 -8.336 -8.731 -1.089 -2.342 -2.765 1.516 -2.802 -3.546 1.422 -3.088 -2.893 2.373 -3.386 -0.388 1.064 -2.833 -0.684 -1.876 ML 159 157 6 162 6 1 1 23 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 23 42 -7.475 -6.204 -0.950 -6.182 -1.316 -4.395 -0.167 -0.486 -0.785 0.860 D 161 157 6 162 6 0 0 22 41 -10.056 -8.754 -4.551 -5.233 -5.251 -0.150 IL 162 162 5 162 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 41 50 g c - - MP 164 163 6 168 4 2 2 21 40 -7.495 -7.702 -0.036 -6.116 -2.887 -2.374 -1.326 1.706 -3.114 -3.708 0.888 -3.317 -3.110 2.524 -3.574 -0.306 1.144 -2.986 -0.921 -2.032 ML 165 163 6 168 4 1 1 23 42 -4.181 -1.725 -0.929 -3.092 1.026 -0.893 -0.638 -0.354 MR 166 163 6 168 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 22 41 -5.527 -0.964 -3.224 -1.479 IL 168 168 5 168 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 23 42 -1.406 -1.280 -2.247 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - C - - - ML 170 169 6 172 3 1 1 18 37 -8.560 -0.385 -2.110 -0.200 1.003 -1.764 -0.267 D 171 169 6 172 3 0 0 17 36 -7.401 -2.914 -0.215 IL 172 172 3 172 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - U - - - ML 173 172 3 175 3 1 1 17 36 -8.193 -0.100 -3.975 -1.298 -0.840 -2.042 1.481 D 174 172 3 175 3 0 0 15 34 -8.630 -2.340 -0.322 IL 175 175 3 175 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 44 - a - - - ML 176 175 3 178 3 1 1 16 35 -8.217 -0.017 -6.871 0.863 -1.173 -0.087 -0.329 D 177 175 3 178 3 0 0 14 33 -8.582 -4.095 -0.091 IL 178 178 3 178 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 45 - a - - - ML 179 178 3 181 3 1 1 15 33 -8.217 -0.017 -6.871 0.992 -0.741 -1.180 -0.043 D 180 178 3 181 3 0 0 13 31 -8.582 -4.095 -0.091 IL 181 181 3 181 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 46 - c - - - ML 182 181 3 184 3 1 1 13 31 -8.217 -0.017 -6.871 -0.058 0.579 -0.807 -0.038 D 183 181 3 184 3 0 0 12 30 -8.582 -2.237 -0.349 IL 184 184 3 184 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 47 - a - - - ML 185 184 3 187 2 1 1 1 1 * 0.000 0.865 -1.098 -0.406 -0.064 D 186 184 3 187 2 0 0 0 0 * 0.000 IL 187 187 3 187 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 188 187 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME NsiR1 ACC RF02399 DESC Nitrogen stress-induced RNA 1 LENG 60 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 20:30:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02399/CM NSEQ 17 EFFN 6.993408 CKSUM 3201905534 STATS LOCAL MSV -7.9212 0.71922 STATS LOCAL VITERBI -8.7743 0.71922 STATS LOCAL FORWARD -3.1858 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.63068 1.47950 1.38955 1.11698 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 0.00000 * 1 2.03382 2.89732 3.35242 0.24975 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 2 2.01529 4.13972 0.18266 4.03186 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 3 3.52292 4.53301 0.05266 4.50659 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 4 4.78931 3.47976 4.72493 0.04919 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 5 0.03713 4.61151 4.23814 4.41651 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 6 3.97937 4.99451 0.03738 4.49067 6 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 7 0.03713 4.61151 4.23814 4.41651 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 8 3.94158 3.71450 4.48985 0.05658 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 9 3.97937 4.99451 0.03738 4.49067 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 10 4.36447 0.04616 4.80667 3.72083 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 11 0.05736 4.90367 3.29625 4.48223 11 A - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 12 4.56639 0.06625 4.38999 3.18673 12 C - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 13 4.15528 0.09833 3.95417 2.83377 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 14 4.36447 0.04616 4.80667 3.72083 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 15 3.94158 3.71450 4.48985 0.05658 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 16 3.97937 4.99451 0.03738 4.49067 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 17 0.23322 3.55498 1.93620 3.34715 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 18 2.51682 3.03312 3.57978 0.17051 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 19 0.90928 2.36526 2.12855 0.95646 19 a - - - 1.38629 1.38629 1.38629 1.38629 0.94608 0.95480 1.48346 0.71031 0.67628 1.09861 0.40547 20 2.26092 2.49469 1.73363 0.45164 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.02438 4.41948 4.41948 1.46634 0.26236 0.79189 0.60328 21 0.69245 2.37511 2.06842 1.27203 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.02154 4.54186 4.54186 1.46634 0.26236 0.14045 2.03232 22 0.97755 1.66701 1.50584 1.54588 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.05960 3.02755 4.66465 0.35201 1.21495 1.09861 0.40547 23 1.14423 1.15568 1.87312 1.54626 26 a - - - 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 24 1.28966 1.80778 2.16170 0.80858 27 u - - - 1.38629 1.38629 1.38629 1.38629 0.10373 2.41793 4.66465 0.80862 0.58964 1.09861 0.40547 25 2.32120 0.79054 1.72662 1.30800 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 26 4.64662 0.05451 4.59528 3.40045 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 27 3.61732 0.29723 3.56871 1.59907 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 28 4.44484 0.05999 4.46270 3.35361 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 29 2.76984 1.07982 2.11046 0.74131 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 30 0.72081 4.02780 0.75227 3.70786 36 a - - < 1.38629 1.38629 1.38629 1.38629 0.07651 4.66465 2.74519 1.46634 0.26236 1.09861 0.40547 31 2.23474 2.55247 0.26502 3.03860 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.02014 4.60828 4.60828 1.46634 0.26236 0.25725 1.48356 32 1.75810 1.00212 2.00693 1.12047 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 33 1.80543 1.41867 1.59833 0.93821 39 u - - < 1.38629 1.38629 1.38629 1.38629 0.19539 4.66465 1.78343 1.46634 0.26236 1.09861 0.40547 34 1.41431 1.73318 0.90640 1.73606 40 g - - < 1.38629 1.38629 1.38629 1.38629 0.02265 4.49192 4.49192 1.46634 0.26236 1.01340 0.45096 35 1.25886 2.25631 0.83602 1.72678 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.02117 4.55905 4.55905 1.46634 0.26236 2.61271 0.07616 36 1.58686 0.58388 2.92544 1.69248 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.32188 4.55905 1.32900 1.46634 0.26236 2.61271 0.07616 37 2.66818 2.11392 3.18912 0.26312 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09907 4.26565 2.52223 1.46634 0.26236 1.67118 0.20829 38 0.72826 2.36888 1.42291 1.70017 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02793 4.28530 4.28530 1.46634 0.26236 3.59743 0.02778 39 0.61569 1.97922 2.39081 1.46969 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02793 4.28530 4.28530 1.46634 0.26236 3.59743 0.02778 40 1.48141 0.88570 2.00728 1.48764 46 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02793 4.28530 4.28530 1.46634 0.26236 0.73791 0.65030 41 0.72638 2.30685 1.68610 1.46305 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02271 4.48950 4.48950 1.46634 0.26236 0.10508 2.30514 42 1.86170 0.89283 1.88904 1.25921 50 c - - > 1.38629 1.38629 1.38629 1.38629 0.12677 4.66465 2.21055 1.46634 0.26236 1.09861 0.40547 43 1.76483 1.00782 1.61199 1.33075 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.11704 4.55905 2.30283 1.46634 0.26236 0.15861 1.91956 44 1.41572 1.65824 1.02412 1.57183 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.11335 4.58069 2.33396 1.46634 0.26236 0.19020 1.75327 45 1.50062 2.15718 0.81416 1.52167 53 g - - > 1.38629 1.38629 1.38629 1.38629 0.02069 4.58161 4.58161 1.46634 0.26236 0.19185 1.74543 46 3.16638 0.32681 2.44317 1.89887 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 47 3.90205 2.05560 3.81390 0.18666 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 48 1.57191 2.22446 0.50052 2.55088 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 49 3.66843 4.75005 0.04661 4.47630 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.06538 4.66465 2.92123 1.46634 0.26236 1.09861 0.40547 50 2.74985 3.79829 0.12208 3.55531 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.01992 4.61919 4.61919 1.46634 0.26236 0.29999 1.35026 51 3.66725 4.74790 0.04669 4.47402 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 52 1.48193 2.04132 0.70747 1.89676 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 53 1.44389 1.87184 2.66261 0.61547 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 54 3.94158 3.71450 4.48985 0.05658 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 55 3.94158 3.71450 4.48985 0.05658 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 56 3.94158 3.71450 4.48985 0.05658 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 57 3.94158 3.71450 4.48985 0.05658 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 58 3.94158 3.71450 4.48985 0.05658 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 59 2.02504 2.04487 3.05750 0.36873 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.01902 4.66465 4.66465 1.46634 0.26236 1.09861 0.40547 60 2.42199 2.81763 2.65990 0.24647 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.00956 4.65518 * 1.46634 0.26236 0.00000 * //