INFERNAL1/a [1.1.5 | Sep 2023] NAME sau-5949 ACC RF02396 DESC Staphylococcus sRNA sau-5949 STATES 181 NODES 46 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 17:17:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02396/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.648926 CKSUM 2432150752 NULL 0.000 0.000 0.000 0.000 GA 56.00 TC 59.40 NC 51.90 EFP7GF -11.3882 0.71920 ECMLC 0.50111 -9.59311 2.86916 1600000 618526 0.001940 ECMGC 0.39608 -16.47591 -0.84386 1600000 195437 0.002047 ECMLI 0.48227 -8.27878 3.94552 1600000 436020 0.002752 ECMGI 0.41848 -11.80792 1.69273 1600000 113695 0.003518 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -7.112 -8.358 -0.068 -4.811 IL 1 1 2 1 4 1 14 75 95 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 59 - U - - MR 3 2 3 5 3 1 15 74 93 -8.590 -0.016 -6.908 -0.614 -0.473 -0.808 1.039 D 4 2 3 5 3 0 10 72 92 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 14 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - U - - MR 6 5 3 8 3 1 15 73 92 -8.590 -0.016 -6.908 -1.961 -1.876 -2.714 1.730 D 7 5 3 8 3 0 9 71 91 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 57 - U - - MR 9 8 3 11 3 1 14 72 91 -8.590 -0.016 -6.908 -1.961 -1.876 -2.714 1.730 D 10 8 3 11 3 0 8 70 90 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 56 - U - - MR 12 11 3 14 3 1 13 71 90 -8.590 -0.016 -6.908 -1.961 -1.876 -2.714 1.730 D 13 11 3 14 3 0 7 69 89 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 55 - U - - MR 15 14 3 17 3 1 13 70 89 -8.590 -0.016 -6.908 -0.448 -1.148 -1.640 1.319 D 16 14 3 17 3 0 6 68 88 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 54 - U - - MR 18 17 3 20 3 1 12 69 88 -8.590 -0.016 -6.908 -1.961 -1.876 -2.714 1.730 D 19 17 3 20 3 0 6 67 87 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 53 - C - - MR 21 20 3 23 3 1 11 68 87 -8.590 -0.016 -6.908 -2.357 1.755 -3.188 -1.649 D 22 20 3 23 3 0 5 66 86 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 52 - G - - MR 24 23 3 26 3 1 11 67 86 -8.590 -0.016 -6.908 -2.106 -3.400 1.819 -2.787 D 25 23 3 26 3 0 4 65 85 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 9 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 51 - C - - MR 27 26 3 29 3 1 10 66 85 -8.590 -0.016 -6.908 -2.357 1.755 -3.188 -1.649 D 28 26 3 29 3 0 3 64 84 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 8 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 50 - G - - MR 30 29 3 32 3 1 9 65 84 -8.590 -0.016 -6.908 -2.106 -3.400 1.819 -2.787 D 31 29 3 32 3 0 3 63 83 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 49 - U - - MR 33 32 3 35 3 1 9 64 83 -8.590 -0.016 -6.908 -0.469 -1.155 -1.652 1.328 D 34 32 3 35 3 0 2 62 82 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 7 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 48 - U - - MR 36 35 3 38 5 1 8 63 82 -7.314 -0.033 -7.130 -7.342 -8.234 -1.961 -1.876 -2.714 1.730 D 37 35 3 38 5 0 1 62 81 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 5 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 1 47 U A - - MP 39 38 3 43 6 2 9 62 81 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -4.814 -4.650 -4.580 -0.906 -3.398 -5.085 0.938 -4.134 -4.580 -0.729 -4.922 -2.529 3.559 -4.937 -1.060 -3.332 ML 40 38 3 43 6 1 3 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 3 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 4 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 2 46 U A - - MP 45 44 6 49 6 2 9 60 79 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -4.814 -4.650 -4.580 -0.906 -3.398 -5.085 0.938 -4.134 -4.580 -0.729 -4.922 -2.529 3.559 -4.937 -1.060 -3.332 ML 46 44 6 49 6 1 3 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 4 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 4 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 3 45 a u - - MP 51 50 6 55 6 2 9 58 77 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -3.657 -2.613 -3.705 2.702 -4.267 -4.772 0.134 -3.950 -3.659 2.455 -4.156 -0.163 -0.157 -3.970 -1.810 -2.565 ML 52 50 6 55 6 1 3 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 4 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 4 44 u a - - MP 57 56 6 61 6 2 8 56 75 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -3.769 -3.760 -3.667 -0.087 -2.655 -4.251 1.653 -3.357 -3.685 0.098 -4.085 -1.815 2.797 -3.929 1.436 -2.582 ML 58 56 6 61 6 1 2 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 3 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 4 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 5 43 C G - - MP 63 62 6 67 6 2 7 54 73 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -5.104 -5.057 -4.697 -1.248 -3.305 -5.035 3.691 -4.170 -4.770 -1.074 -4.966 -3.017 0.146 -5.135 -1.030 -3.593 ML 64 62 6 67 6 1 2 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 3 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 3 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 6 42 U A - - MP 69 68 6 73 6 2 6 52 71 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -4.044 -4.019 -3.914 -0.312 -2.850 -4.474 1.477 -3.567 -3.930 -0.113 -4.316 -2.044 3.158 -4.186 0.628 -2.787 ML 70 68 6 73 6 1 2 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 2 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 2 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 7 41 C G - - MP 75 74 6 79 4 2 4 50 69 -7.216 -7.423 -0.044 -5.837 -5.104 -5.057 -4.697 -1.248 -3.305 -5.035 3.691 -4.170 -4.770 -1.074 -4.966 -3.017 0.146 -5.135 -1.030 -3.593 ML 76 74 6 79 4 1 1 50 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 2 52 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 2 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 8 - C - - - ML 81 80 6 83 3 1 3 48 67 -8.215 -0.017 -6.869 -0.578 1.295 -1.930 -0.704 D 82 80 6 83 3 0 0 46 66 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 9 - U - - - ML 84 83 3 86 3 1 2 46 66 -8.215 -0.017 -6.869 -0.492 -1.163 -1.666 1.337 D 85 83 3 86 3 0 0 45 64 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 10 - U - - - ML 87 86 3 89 3 1 2 45 65 -8.590 -0.016 -6.908 -1.961 -1.876 -2.714 1.730 D 88 86 3 89 3 0 0 44 63 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 40 - A - - MR 90 89 3 92 3 1 1 44 64 -8.590 -0.016 -6.908 1.808 -2.880 -2.462 -2.474 D 91 89 3 92 3 0 0 43 62 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 39 - U - - MR 93 92 3 95 5 1 1 43 62 -7.314 -0.033 -7.130 -7.342 -8.234 -1.961 -1.876 -2.714 1.730 D 94 92 3 95 5 0 0 42 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 11 38 u a - - MP 96 95 3 100 6 2 2 42 61 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -0.391 -2.837 -2.925 0.513 -2.505 -3.722 1.478 -2.995 -2.953 0.651 -3.474 -1.065 2.802 -3.102 -0.384 -1.992 ML 97 95 3 100 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 12 37 A U - - MP 102 101 6 106 6 2 2 40 59 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -3.757 -2.711 -3.852 3.229 -4.637 -5.417 -0.361 -4.001 -3.689 1.146 -4.267 1.001 -0.591 -4.434 -2.252 -2.656 ML 103 101 6 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 13 36 g u - - MP 108 107 6 112 6 2 2 38 57 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -3.737 -2.550 -3.898 2.180 -4.851 -5.445 -0.490 -4.010 -3.616 1.178 -4.164 2.791 -0.715 -4.515 -2.395 -2.629 ML 109 107 6 112 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 14 35 U A - - MP 114 113 6 118 6 2 2 36 55 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -4.814 -4.650 -4.580 -0.906 -3.398 -5.085 0.938 -4.134 -4.580 -0.729 -4.922 -2.529 3.559 -4.937 -1.060 -3.332 ML 115 113 6 118 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 15 34 U A - - MP 120 119 6 124 6 2 2 34 53 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -4.814 -4.650 -4.580 -0.906 -3.398 -5.085 0.938 -4.134 -4.580 -0.729 -4.922 -2.529 3.559 -4.937 -1.060 -3.332 ML 121 119 6 124 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 16 33 a u - - MP 126 125 6 130 4 2 2 32 51 -7.216 -7.423 -0.530 -1.762 -3.197 -2.860 -3.256 2.186 -2.845 -4.102 1.394 -3.261 -3.258 1.114 -3.759 -0.716 2.083 -3.464 -0.577 -2.208 ML 127 125 6 130 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 17 - u - - - ML 132 131 6 134 3 1 1 30 49 -7.779 -0.023 -6.433 0.027 -0.760 -1.104 0.945 D 133 131 6 134 3 0 0 29 48 -8.126 -0.283 -2.517 IL 134 134 3 134 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 18 - u - - - ML 135 134 3 137 3 1 1 29 48 -8.215 -0.017 -6.869 -0.175 -0.934 -0.686 0.978 D 136 134 3 137 3 0 0 28 47 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 19 - u - - - ML 138 137 3 140 3 1 1 28 46 -8.590 -0.016 -6.908 -0.507 -1.051 0.247 0.702 D 139 137 3 140 3 0 0 26 45 -5.620 -0.734 -1.403 IL 140 140 3 140 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 32 - U - - MR 141 140 3 143 3 1 1 27 45 -8.590 -0.016 -6.908 -1.961 -1.876 -2.714 1.730 D 142 140 3 143 3 0 0 25 44 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 31 - U - - MR 144 143 3 146 3 1 1 26 44 -8.590 -0.016 -6.908 -1.961 -1.876 -2.714 1.730 D 145 143 3 146 3 0 0 24 43 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 30 - U - - MR 147 146 3 149 5 1 1 25 43 -7.314 -0.033 -7.130 -7.342 -8.234 -1.961 -1.876 -2.714 1.730 D 148 146 3 149 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 20 29 G C - - MP 150 149 3 154 6 2 2 24 42 -9.216 -9.155 -0.020 -7.932 -8.211 -8.606 -5.233 -3.332 -5.395 -0.138 -5.921 -4.879 -1.163 -5.661 -4.633 3.737 -4.938 -1.054 -1.536 -4.786 -3.229 -4.265 ML 151 149 3 154 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 21 28 U A - - MP 156 155 6 160 4 2 2 22 40 -7.216 -7.423 -0.044 -5.837 -4.814 -4.650 -4.580 -0.906 -3.398 -5.085 0.938 -4.134 -4.580 -0.729 -4.922 -2.529 3.559 -4.937 -1.060 -3.332 ML 157 155 6 160 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 22 - U - - - ML 162 161 6 164 3 1 1 19 37 -8.215 -0.017 -6.869 -0.848 -1.132 -0.882 1.290 D 163 161 6 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 23 - U - - - ML 165 164 3 167 3 1 1 17 36 -8.215 -0.017 -6.869 -1.961 -1.876 -2.714 1.730 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 24 - a - - - ML 168 167 3 170 3 1 1 16 35 -8.215 -0.017 -6.869 0.877 -1.618 0.436 -1.046 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 25 - G - - - ML 171 170 3 173 3 1 1 15 33 -8.215 -0.017 -6.869 -2.106 -3.400 1.819 -2.787 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 26 - U - - - ML 174 173 3 176 3 1 1 13 31 -8.215 -0.017 -6.869 -0.621 -1.042 -0.303 1.038 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 27 - C - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -1.377 1.357 -2.228 -0.252 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sau-5949 ACC RF02396 DESC Staphylococcus sRNA sau-5949 LENG 59 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 17:17:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02396/CM NSEQ 7 EFFN 3.578613 CKSUM 2432150752 STATS LOCAL MSV -8.1974 0.71920 STATS LOCAL VITERBI -8.5185 0.71920 STATS LOCAL FORWARD -3.3498 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53759 1.75400 1.64919 0.86794 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 0.00000 * 1 3.61036 2.40066 3.42357 0.16287 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 2 3.61035 2.40066 3.42357 0.16287 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 3 0.74046 2.82336 0.93007 2.67113 3 a - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 4 2.85663 1.68498 2.64990 0.37625 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 5 3.73890 0.13965 3.57529 2.54405 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 6 3.02692 1.82916 2.81819 0.31297 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 7 3.73532 0.13987 3.57334 2.54336 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 8 1.90774 0.39294 2.99311 2.06841 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 9 1.81773 2.36716 2.74160 0.38656 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 10 3.10322 2.98625 3.63610 0.12981 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 11 1.89785 1.73198 2.16790 0.58204 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 12 0.40008 3.28043 1.40706 3.05214 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 13 1.16607 3.36592 0.49467 3.12113 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 14 3.60781 2.40040 3.42224 0.16303 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 15 3.60579 2.40020 3.42118 0.16315 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 16 1.06811 1.83798 1.87154 1.06910 16 a - - < 1.38629 1.38629 1.38629 1.38629 0.38270 4.12089 1.19815 1.46634 0.26236 1.09861 0.40547 17 1.39746 1.99844 2.25364 0.66902 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04650 3.78469 3.78469 1.46634 0.26236 0.10217 2.33176 18 1.54841 2.13986 1.88621 0.65759 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 19 1.85548 2.23709 1.16521 0.85567 19 u - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 20 2.92486 3.74783 0.10789 3.68774 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 21 3.60945 2.40057 3.42309 0.16292 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 22 2.16316 2.34074 2.05572 0.41433 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 23 3.10322 2.98625 3.63610 0.12981 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 24 0.73183 2.71328 1.03466 2.32986 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 25 3.20947 4.14726 0.08403 3.71286 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 26 1.95905 2.24628 1.59293 0.59804 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 27 2.59939 0.36707 3.21113 1.64711 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 28 0.18434 3.62286 2.23708 3.35613 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 29 3.89005 0.12822 3.60942 2.61961 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 30 3.10322 2.98625 3.63610 0.12981 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 31 3.10322 2.98625 3.63610 0.12981 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 32 3.10322 2.98625 3.63610 0.12981 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 33 1.16957 2.07105 1.66792 0.98135 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 34 0.18513 3.61494 2.23572 3.34759 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 35 0.18492 3.61698 2.23607 3.34979 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 36 3.32075 2.15420 3.15093 0.21683 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 37 3.26277 2.15933 3.07220 0.22315 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 38 0.55027 2.35196 1.55909 2.13965 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 39 3.10322 2.98625 3.63610 0.12981 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 40 0.08951 3.75423 3.43144 3.51114 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 41 2.82348 3.73806 0.12018 3.50517 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 42 0.45589 2.98410 1.36963 2.79153 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 43 2.82543 3.74117 0.11985 3.50865 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 44 0.69731 2.81660 0.99480 2.62457 44 a - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 45 2.90305 1.04589 2.62954 0.65075 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 46 0.18431 3.62313 2.23712 3.35641 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 47 0.18377 3.62862 2.23805 3.36234 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 48 3.10322 2.98625 3.63610 0.12981 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 49 1.79817 2.36033 2.72970 0.39338 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 50 3.20947 4.14726 0.08403 3.71286 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 51 3.46231 0.11047 4.02097 2.89512 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 52 3.20947 4.14726 0.08403 3.71286 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 53 3.46231 0.11047 4.02097 2.89512 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 54 3.10322 2.98625 3.63610 0.12981 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 55 1.78072 2.35425 2.71907 0.39961 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 56 3.10322 2.98625 3.63610 0.12981 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 57 3.10322 2.98625 3.63610 0.12981 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 58 3.10322 2.98625 3.63610 0.12981 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.03300 4.12089 4.12089 1.46634 0.26236 1.09861 0.40547 59 1.93100 1.74853 1.97909 0.61107 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.01664 4.10453 * 1.46634 0.26236 0.00000 * //