INFERNAL1/a [1.1.5 | Sep 2023] NAME sau-31 ACC RF02389 DESC Staphylococcus sRNA sau-31 STATES 202 NODES 57 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 14:21:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02389/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.649414 CKSUM 809293414 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 98.90 NC 45.40 EFP7GF -8.8252 0.71897 ECMLC 0.56006 -6.18430 4.26058 1600000 416566 0.002881 ECMGC 0.42477 -13.24459 -0.00657 1600000 110696 0.003613 ECMLI 0.53176 -4.07536 6.03614 1600000 259626 0.004622 ECMGI 0.46293 -8.40861 3.07392 1600000 81399 0.004914 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.828 -7.035 -0.058 -5.449 IL 1 1 2 1 4 1 24 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 23 82 102 -8.252 -0.020 -6.569 -1.344 -2.525 1.663 -1.911 D 4 2 3 5 3 0 19 81 101 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 22 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 66 - U - - MR 6 5 3 8 3 1 22 81 101 -8.252 -0.020 -6.569 -1.284 -1.317 -2.007 1.555 D 7 5 3 8 3 0 17 79 99 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 21 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - A - - MR 9 8 3 11 3 1 21 80 100 -8.252 -0.020 -6.569 1.666 -2.150 -1.804 -1.671 D 10 8 3 11 3 0 16 78 98 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 21 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 64 - G - - MR 12 11 3 14 3 1 21 79 99 -8.252 -0.020 -6.569 -1.344 -2.525 1.663 -1.911 D 13 11 3 14 3 0 15 77 97 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 20 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 63 - U - - MR 15 14 3 17 3 1 20 78 98 -8.252 -0.020 -6.569 -1.284 -1.317 -2.007 1.555 D 16 14 3 17 3 0 14 76 96 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 19 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 62 - A - - MR 18 17 3 20 3 1 19 77 97 -8.252 -0.020 -6.569 1.666 -2.150 -1.804 -1.671 D 19 17 3 20 3 0 13 75 95 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 18 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 61 - c - - MR 21 20 3 23 3 1 19 76 96 -8.252 -0.020 -6.569 -0.352 0.564 -0.174 -0.233 D 22 20 3 23 3 0 12 74 94 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 17 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 60 - A - - MR 24 23 3 26 3 1 18 75 95 -8.252 -0.020 -6.569 1.666 -2.150 -1.804 -1.671 D 25 23 3 26 3 0 11 74 93 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 17 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 59 - A - - MR 27 26 3 29 5 1 17 74 94 -6.997 -0.042 -6.813 -7.025 -7.917 1.666 -2.150 -1.804 -1.671 D 28 26 3 29 5 0 10 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 15 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 2 58 g u - - MP 30 29 3 34 6 2 18 73 93 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -3.479 -2.302 -3.633 1.214 -4.236 -4.964 0.131 -3.676 -3.335 1.543 -3.849 2.922 -0.230 -4.199 -1.810 -2.364 ML 31 29 3 34 6 1 12 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 12 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 7 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 14 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 14 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 3 57 U A - - MP 36 35 6 40 6 2 16 71 91 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -3.964 -3.781 -3.827 -0.094 -2.819 -4.412 1.504 -3.498 -3.834 0.197 -4.219 -1.687 3.208 -4.124 -0.501 -2.680 ML 37 35 6 40 6 1 12 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 10 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 7 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 13 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 13 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 4 56 C G - - MP 42 41 6 46 6 2 14 69 89 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -4.329 -4.214 -4.055 -0.467 -2.823 -4.495 3.476 -3.611 -4.098 -0.193 -4.381 -2.159 0.712 -4.412 -0.525 -2.945 ML 43 41 6 46 6 1 11 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 9 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 7 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 12 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 12 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 55 g c - - MP 48 47 6 52 4 2 13 67 87 -6.828 -7.035 -0.058 -5.449 -3.233 1.505 -3.352 1.061 -3.691 -4.131 0.435 -3.600 -3.258 2.676 -3.717 -0.060 0.147 -3.488 -1.419 -2.298 ML 49 47 6 52 4 1 10 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 7 67 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 6 66 86 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 11 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 6 - A - - - ML 54 53 6 56 3 1 11 65 84 -7.854 -0.022 -6.508 1.666 -2.150 -1.804 -1.671 D 55 53 6 56 3 0 6 63 83 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 7 - A - - - ML 57 56 3 59 3 1 10 64 83 -7.854 -0.022 -6.508 1.666 -2.150 -1.804 -1.671 D 58 56 3 59 3 0 5 62 82 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 8 - A - - - ML 60 59 3 62 3 1 10 63 82 -7.854 -0.022 -6.508 1.666 -2.150 -1.804 -1.671 D 61 59 3 62 3 0 4 61 81 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 9 - A - - - ML 63 62 3 65 3 1 9 62 81 -7.854 -0.022 -6.508 1.666 -2.150 -1.804 -1.671 D 64 62 3 65 3 0 3 60 80 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 10 - U - - - ML 66 65 3 68 3 1 8 60 80 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 67 65 3 68 3 0 3 59 79 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 11 - U - - - ML 69 68 3 71 3 1 7 59 79 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 70 68 3 71 3 0 2 58 78 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 12 - U - - - ML 72 71 3 74 3 1 7 58 78 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 73 71 3 74 3 0 2 57 77 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 6 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 13 - C - - - ML 75 74 3 77 3 1 6 57 77 -8.252 -0.020 -6.569 -1.476 1.544 -2.290 -0.944 D 76 74 3 77 3 0 1 56 76 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 5 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 54 - A - - MR 78 77 3 80 3 1 5 56 76 -8.252 -0.020 -6.569 1.666 -2.150 -1.804 -1.671 D 79 77 3 80 3 0 0 55 74 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 4 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 53 - A - - MR 81 80 3 83 3 1 5 55 75 -8.252 -0.020 -6.569 1.666 -2.150 -1.804 -1.671 D 82 80 3 83 3 0 0 54 73 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 3 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 52 - U - - MR 84 83 3 86 3 1 4 54 74 -8.252 -0.020 -6.569 -1.284 -1.317 -2.007 1.555 D 85 83 3 86 3 0 0 53 72 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 3 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 51 - A - - MR 87 86 3 89 3 1 4 53 73 -8.252 -0.020 -6.569 1.666 -2.150 -1.804 -1.671 D 88 86 3 89 3 0 0 52 71 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 50 - C - - MR 90 89 3 92 3 1 3 52 72 -8.252 -0.020 -6.569 -1.476 1.544 -2.290 -0.944 D 91 89 3 92 3 0 0 51 70 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 2 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 49 - U - - MR 93 92 3 95 3 1 3 51 71 -8.252 -0.020 -6.569 -1.284 -1.317 -2.007 1.555 D 94 92 3 95 3 0 0 50 69 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 48 - U - - MR 96 95 3 98 3 1 2 50 70 -8.252 -0.020 -6.569 -1.284 -1.317 -2.007 1.555 D 97 95 3 98 3 0 0 49 68 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 51 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 47 - A - - MR 99 98 3 101 3 1 2 49 69 -8.252 -0.020 -6.569 1.666 -2.150 -1.804 -1.671 D 100 98 3 101 3 0 0 48 67 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 46 - U - - MR 102 101 3 104 3 1 2 48 68 -8.252 -0.020 -6.569 -1.284 -1.317 -2.007 1.555 D 103 101 3 104 3 0 0 47 66 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 45 - U - - MR 105 104 3 107 5 1 1 47 67 -6.997 -0.042 -6.813 -7.025 -7.917 -1.284 -1.317 -2.007 1.555 D 106 104 3 107 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 14 44 A U - - MP 108 107 3 112 6 2 2 46 66 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -3.614 -2.692 -3.644 3.203 -3.895 -4.943 0.393 -3.697 -3.544 1.271 -4.083 -0.199 -0.025 -4.160 -1.549 -2.490 ML 109 107 3 112 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 15 43 g c - - MP 114 113 6 118 4 2 2 44 64 -6.828 -7.035 -0.058 -5.449 -3.233 1.505 -3.352 1.061 -3.691 -4.131 0.435 -3.600 -3.258 2.676 -3.717 -0.060 0.147 -3.488 -1.419 -2.298 ML 115 113 6 118 4 1 1 45 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 46 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 16 - U - - - ML 120 119 6 122 3 1 1 42 61 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 121 119 6 122 3 0 0 40 60 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 17 - C - - - ML 123 122 3 125 3 1 1 41 60 -8.252 -0.020 -6.569 -1.476 1.544 -2.290 -0.944 D 124 122 3 125 3 0 0 39 59 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 41 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 42 - C - - MR 126 125 3 128 3 1 1 40 59 -8.252 -0.020 -6.569 -1.476 1.544 -2.290 -0.944 D 127 125 3 128 3 0 0 38 57 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 40 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 41 - C - - MR 129 128 3 131 5 1 1 39 58 -6.997 -0.042 -6.813 -7.025 -7.917 -1.476 1.544 -2.290 -0.944 D 130 128 3 131 5 0 0 37 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 18 40 g u - - MP 132 131 3 136 6 2 2 38 57 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -3.479 -2.302 -3.633 1.214 -4.236 -4.964 0.131 -3.676 -3.335 1.543 -3.849 2.922 -0.230 -4.199 -1.810 -2.364 ML 133 131 3 136 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 19 39 C G - - MP 138 137 6 142 6 2 2 36 55 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -4.329 -4.214 -4.055 -0.467 -2.823 -4.495 3.476 -3.611 -4.098 -0.193 -4.381 -2.159 0.712 -4.412 -0.525 -2.945 ML 139 137 6 142 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 20 38 U A - - MP 144 143 6 148 6 2 2 34 53 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -3.964 -3.781 -3.827 -0.094 -2.819 -4.412 1.504 -3.498 -3.834 0.197 -4.219 -1.687 3.208 -4.124 -0.501 -2.680 ML 145 143 6 148 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 21 37 G C - - MP 150 149 6 154 6 2 2 32 51 -9.063 -9.002 -0.022 -7.779 -8.059 -8.454 -4.529 -2.993 -4.611 0.340 -4.933 -4.609 -0.350 -4.837 -4.185 3.583 -4.538 -0.685 -0.741 -4.328 -2.376 -3.491 ML 151 149 6 154 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 22 36 U A - - MP 156 155 6 160 4 2 2 30 49 -6.828 -7.035 -0.058 -5.449 -3.964 -3.781 -3.827 -0.094 -2.819 -4.412 1.504 -3.498 -3.834 0.197 -4.219 -1.687 3.208 -4.124 -0.501 -2.680 ML 157 155 6 160 4 1 1 30 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 23 - G - - - ML 162 161 6 164 3 1 1 27 46 -7.854 -0.022 -6.508 -1.344 -2.525 1.663 -1.911 D 163 161 6 164 3 0 0 26 45 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 24 - C - - - ML 165 164 3 167 3 1 1 26 45 -7.854 -0.022 -6.508 -1.476 1.544 -2.290 -0.944 D 166 164 3 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 25 - C - - - ML 168 167 3 170 3 1 1 25 44 -7.854 -0.022 -6.508 -1.476 1.544 -2.290 -0.944 D 169 167 3 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 26 - U - - - ML 171 170 3 173 3 1 1 24 42 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 172 170 3 173 3 0 0 23 42 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 27 - U - - - ML 174 173 3 176 3 1 1 22 41 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 28 - C - - - ML 177 176 3 179 3 1 1 21 40 -7.854 -0.022 -6.508 -1.476 1.544 -2.290 -0.944 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 29 - U - - - ML 180 179 3 182 3 1 1 20 39 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 30 - U - - - ML 183 182 3 185 3 1 1 19 38 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 31 - U - - - ML 186 185 3 188 3 1 1 18 36 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 32 - A - - - ML 189 188 3 191 3 1 1 16 35 -7.854 -0.022 -6.508 1.666 -2.150 -1.804 -1.671 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 33 - U - - - ML 192 191 3 194 3 1 1 15 33 -7.854 -0.022 -6.508 -1.284 -1.317 -2.007 1.555 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 34 - A - - - ML 195 194 3 197 3 1 1 13 32 -7.854 -0.022 -6.508 1.666 -2.150 -1.804 -1.671 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 35 - G - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -1.344 -2.525 1.663 -1.911 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sau-31 ACC RF02389 DESC Staphylococcus sRNA sau-31 LENG 66 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 14:21:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02389/CM NSEQ 3 EFFN 1.965820 CKSUM 809293414 STATS LOCAL MSV -8.2624 0.71897 STATS LOCAL VITERBI -8.9461 0.71897 STATS LOCAL FORWARD -3.4312 0.71897 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27079 1.52484 1.66761 1.16143 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 0.00000 * 1 2.50241 3.35138 0.18695 2.92643 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 2 1.83671 2.70196 0.35915 2.58609 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 3 2.76539 1.75485 2.49218 0.38363 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 4 3.00595 0.29183 2.75626 1.96553 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 5 1.06682 2.44656 0.75394 2.31466 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 6 0.19067 3.04954 2.79246 2.73426 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 7 0.19067 3.04954 2.79246 2.73426 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 8 0.19067 3.04954 2.79246 2.73426 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 9 0.19067 3.04954 2.79246 2.73426 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 10 2.43390 2.42826 2.94334 0.25951 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 11 2.43390 2.42826 2.94334 0.25951 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 12 2.43390 2.42826 2.94334 0.25951 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 13 2.61659 0.25424 3.18834 2.20541 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 14 0.42949 2.54762 1.67266 2.48716 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 15 1.06684 2.44624 0.75408 2.31421 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 16 2.43390 2.42826 2.94334 0.25951 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 17 2.61659 0.25424 3.18834 2.20541 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 18 1.83706 2.70258 0.35892 2.58695 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 19 3.00573 0.29186 2.75616 1.96549 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 20 2.76687 1.75489 2.49277 0.38341 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 21 2.46463 3.04344 0.20233 2.98644 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 22 2.76630 1.75487 2.49254 0.38349 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 23 2.50241 3.35138 0.18695 2.92643 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 24 2.61659 0.25424 3.18834 2.20541 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 25 2.61659 0.25424 3.18834 2.20541 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 26 2.43390 2.42826 2.94334 0.25951 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 27 2.43390 2.42826 2.94334 0.25951 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 28 2.61659 0.25424 3.18834 2.20541 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 29 2.43390 2.42826 2.94334 0.25951 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 30 2.43390 2.42826 2.94334 0.25951 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 31 2.43390 2.42826 2.94334 0.25951 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 32 0.19067 3.04954 2.79246 2.73426 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 33 2.43390 2.42826 2.94334 0.25951 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 34 0.19067 3.04954 2.79246 2.73426 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 35 2.50241 3.35138 0.18695 2.92643 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 36 0.43574 2.67320 1.59172 2.51813 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 37 3.20011 0.23773 2.87616 2.16736 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 38 0.43542 2.67436 1.59177 2.51963 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 39 2.24356 2.92656 0.25165 2.76742 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 40 2.81195 1.74988 2.50971 0.37859 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 41 2.61659 0.25424 3.18834 2.20541 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 42 2.61659 0.25424 3.18834 2.20541 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 43 2.54311 0.48042 2.25711 1.61846 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 44 2.72548 1.94591 2.36527 0.35996 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 45 2.43390 2.42826 2.94334 0.25951 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 46 2.43390 2.42826 2.94334 0.25951 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 47 0.19067 3.04954 2.79246 2.73426 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 48 2.43390 2.42826 2.94334 0.25951 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 49 2.43390 2.42826 2.94334 0.25951 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 50 2.61659 0.25424 3.18834 2.20541 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 51 0.19067 3.04954 2.79246 2.73426 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 52 2.43390 2.42826 2.94334 0.25951 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 53 0.19067 3.04954 2.79246 2.73426 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 54 0.19067 3.04954 2.79246 2.73426 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 55 2.54070 0.48096 2.25626 1.61819 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 56 2.24246 2.92517 0.25204 2.76566 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 57 0.43524 2.67500 1.59180 2.52047 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 58 2.81142 1.74987 2.50951 0.37866 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 59 0.19067 3.04954 2.79246 2.73426 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 60 0.19067 3.04954 2.79246 2.73426 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 61 1.68877 0.94429 1.49534 1.59887 61 c - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 62 0.19067 3.04954 2.79246 2.73426 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 63 2.43390 2.42826 2.94334 0.25951 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 64 2.50241 3.35138 0.18695 2.92643 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 65 0.19067 3.04954 2.79246 2.73426 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.04417 3.83486 3.83486 1.46634 0.26236 1.09861 0.40547 66 2.43390 2.42826 2.94334 0.25951 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02233 3.81302 * 1.46634 0.26236 0.00000 * //