INFERNAL1/a [1.1.5 | Sep 2023] NAME sau-30 ACC RF02388 DESC Staphylococcus sRNA sau-30 STATES 196 NODES 54 CLEN 64 W 79 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 17:22:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02388/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.980469 CKSUM 1525514797 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 88.60 NC 36.70 EFP7GF -5.5173 0.72722 ECMLC 0.54735 -7.45181 3.97654 1600000 624943 0.001920 ECMGC 0.42709 -15.31508 -1.50571 1600000 145706 0.002745 ECMLI 0.54511 -4.96948 5.62622 1600000 386873 0.003102 ECMGI 0.44880 -10.81225 1.38194 1600000 95242 0.004200 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.969 -7.176 -0.052 -5.590 IL 1 1 2 1 4 1 17 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 17 79 98 -7.984 -0.020 -6.638 -1.788 1.637 -2.614 -1.192 D 4 2 3 5 3 0 11 78 97 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 16 78 97 -7.984 -0.020 -6.638 -1.522 -1.512 -2.257 1.628 D 7 5 3 8 3 0 11 77 96 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 15 77 96 -7.984 -0.020 -6.638 -1.788 1.637 -2.614 -1.192 D 10 8 3 11 3 0 10 76 95 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 14 76 95 -7.984 -0.020 -6.638 1.727 -2.411 -2.039 -1.957 D 13 11 3 14 3 0 9 74 94 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 13 75 94 -7.984 -0.020 -6.638 1.727 -2.411 -2.039 -1.957 D 16 14 3 17 3 0 8 73 93 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 13 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 13 74 93 -7.984 -0.020 -6.638 -1.788 1.637 -2.614 -1.192 D 19 17 3 20 3 0 7 72 92 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 12 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 12 73 92 -7.984 -0.020 -6.638 1.727 -2.411 -2.039 -1.957 D 22 20 3 23 3 0 7 71 91 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 11 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 11 71 90 -7.984 -0.020 -6.638 1.727 -2.411 -2.039 -1.957 D 25 23 3 26 3 0 6 70 89 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 10 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 10 70 89 -8.373 -0.018 -6.690 1.727 -2.411 -2.039 -1.957 D 28 26 3 29 3 0 5 69 88 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 9 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 64 - u - - MR 30 29 3 32 3 1 9 69 88 -8.373 -0.018 -6.690 0.556 -0.855 -1.063 0.583 D 31 29 3 32 3 0 3 68 87 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 8 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 63 - u - - MR 33 32 3 35 3 1 8 68 87 -8.373 -0.018 -6.690 -0.378 -0.951 0.343 0.531 D 34 32 3 35 3 0 3 67 86 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 7 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 62 - A - - MR 36 35 3 38 3 1 8 67 86 -8.373 -0.018 -6.690 1.727 -2.411 -2.039 -1.957 D 37 35 3 38 3 0 2 66 85 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 7 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 61 - C - - MR 39 38 3 41 3 1 7 66 85 -8.373 -0.018 -6.690 -1.788 1.637 -2.614 -1.192 D 40 38 3 41 3 0 1 65 84 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 6 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 60 - A - - MR 42 41 3 44 3 1 6 65 84 -8.373 -0.018 -6.690 1.727 -2.411 -2.039 -1.957 D 43 41 3 44 3 0 1 64 83 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 5 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 59 - a - - MR 45 44 3 47 3 1 6 64 83 -8.373 -0.018 -6.690 0.711 -1.413 0.509 -0.825 D 46 44 3 47 3 0 0 63 82 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 4 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 58 - a - - MR 48 47 3 50 3 1 5 63 82 -8.373 -0.018 -6.690 0.711 -1.413 0.509 -0.825 D 49 47 3 50 3 0 0 62 81 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 4 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 57 - U - - MR 51 50 3 53 3 1 5 62 81 -8.373 -0.018 -6.690 -1.522 -1.512 -2.257 1.628 D 52 50 3 53 3 0 0 61 80 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 3 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 56 - a - - MR 54 53 3 56 3 1 4 61 80 -8.373 -0.018 -6.690 0.711 -1.413 0.509 -0.825 D 55 53 3 56 3 0 0 60 79 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 2 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 55 - U - - MR 57 56 3 59 3 1 3 60 79 -8.373 -0.018 -6.690 -1.522 -1.512 -2.257 1.628 D 58 56 3 59 3 0 0 59 78 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 2 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 54 - U - - MR 60 59 3 62 3 1 3 59 78 -8.373 -0.018 -6.690 -1.522 -1.512 -2.257 1.628 D 61 59 3 62 3 0 0 58 77 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 53 - u - - MR 63 62 3 65 3 1 3 58 77 -8.373 -0.018 -6.690 -0.721 0.470 -1.501 0.727 D 64 62 3 65 3 0 0 57 76 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 52 - A - - MR 66 65 3 68 3 1 2 57 76 -8.373 -0.018 -6.690 1.727 -2.411 -2.039 -1.957 D 67 65 3 68 3 0 0 56 75 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 51 - G - - MR 69 68 3 71 3 1 2 56 75 -8.373 -0.018 -6.690 -1.622 -2.849 1.733 -2.236 D 70 68 3 71 3 0 0 55 74 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 50 - G - - MR 72 71 3 74 3 1 1 55 74 -8.373 -0.018 -6.690 -1.622 -2.849 1.733 -2.236 D 73 71 3 74 3 0 0 54 73 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 49 - C - - MR 75 74 3 77 3 1 1 54 73 -8.373 -0.018 -6.690 -1.788 1.637 -2.614 -1.192 D 76 74 3 77 3 0 0 53 72 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 48 - u - - MR 78 77 3 80 3 1 1 53 72 -8.373 -0.018 -6.690 0.556 -0.855 -1.063 0.583 D 79 77 3 80 3 0 0 52 71 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 47 - A - - MR 81 80 3 83 3 1 1 52 71 -8.373 -0.018 -6.690 1.727 -2.411 -2.039 -1.957 D 82 80 3 83 3 0 0 51 70 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 46 - U - - MR 84 83 3 86 3 1 1 51 70 -8.373 -0.018 -6.690 -1.522 -1.512 -2.257 1.628 D 85 83 3 86 3 0 0 50 69 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 45 - A - - MR 87 86 3 89 5 1 1 50 69 -7.110 -0.039 -6.926 -7.138 -8.030 1.727 -2.411 -2.039 -1.957 D 88 86 3 89 5 0 0 49 68 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 10 44 C G - - MP 90 89 3 94 6 2 2 49 68 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -4.597 -4.507 -4.279 -0.735 -2.986 -4.684 3.565 -3.801 -4.330 -0.501 -4.585 -2.455 0.523 -4.663 -0.694 -3.168 ML 91 89 3 94 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 11 43 U A - - MP 96 95 6 100 6 2 2 47 66 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -4.240 -4.066 -4.073 -0.357 -3.004 -4.632 1.325 -3.703 -4.077 -0.111 -4.448 -1.964 3.351 -4.389 -0.679 -2.896 ML 97 95 6 100 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 12 42 U A - - MP 102 101 6 106 6 2 2 45 64 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -4.240 -4.066 -4.073 -0.357 -3.004 -4.632 1.325 -3.703 -4.077 -0.111 -4.448 -1.964 3.351 -4.389 -0.679 -2.896 ML 103 101 6 106 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 13 41 a u - - MP 108 107 6 112 6 2 2 43 62 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -3.011 1.568 -3.151 2.328 -3.503 -4.208 0.455 -3.372 -3.067 1.614 -3.589 0.044 0.204 -3.443 -1.332 -2.097 ML 109 107 6 112 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 14 40 U A - - MP 114 113 6 118 4 2 2 41 60 -6.883 -8.129 -0.080 -4.582 -4.240 -4.066 -4.073 -0.357 -3.004 -4.632 1.325 -3.703 -4.077 -0.111 -4.448 -1.964 3.351 -4.389 -0.679 -2.896 ML 115 113 6 118 4 1 1 41 60 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 40 59 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 38 57 -12.737 -14.007 -2.036 -0.404 IL 118 118 5 118 4 1 1 41 60 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 39 - u - - MR 120 119 6 122 3 1 1 39 58 -8.373 -0.018 -6.690 0.556 -0.855 -1.063 0.583 D 121 119 6 122 3 0 0 38 57 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 38 - G - - MR 123 122 3 125 5 1 1 38 57 -7.110 -0.039 -6.926 -7.138 -8.030 -1.622 -2.849 1.733 -2.236 D 124 122 3 125 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 15 37 G U - - MP 126 125 3 130 6 2 2 37 56 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -3.642 -2.404 -3.811 1.118 -4.549 -5.273 -0.149 -3.831 -3.466 1.322 -3.989 3.110 -0.507 -4.476 -2.091 -2.506 ML 127 125 3 130 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 16 36 A U - - MP 132 131 6 136 6 2 2 35 54 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -3.829 -2.851 -3.846 3.356 -4.203 -5.268 0.100 -3.885 -3.735 1.037 -4.285 -0.321 -0.317 -4.450 -1.841 -2.677 ML 133 131 6 136 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 17 35 U A - - MP 138 137 6 142 6 2 2 33 52 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -4.240 -4.066 -4.073 -0.357 -3.004 -4.632 1.325 -3.703 -4.077 -0.111 -4.448 -1.964 3.351 -4.389 -0.679 -2.896 ML 139 137 6 142 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 18 34 G U - - MP 144 143 6 148 6 2 2 31 50 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -3.642 -2.404 -3.811 1.118 -4.549 -5.273 -0.149 -3.831 -3.466 1.322 -3.989 3.110 -0.507 -4.476 -2.091 -2.506 ML 145 143 6 148 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 19 33 G U - - MP 150 149 6 154 6 2 2 29 48 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -3.642 -2.404 -3.811 1.118 -4.549 -5.273 -0.149 -3.831 -3.466 1.322 -3.989 3.110 -0.507 -4.476 -2.091 -2.506 ML 151 149 6 154 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 20 32 G U - - MP 156 155 6 160 6 2 2 27 46 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -3.642 -2.404 -3.811 1.118 -4.549 -5.273 -0.149 -3.831 -3.466 1.322 -3.989 3.110 -0.507 -4.476 -2.091 -2.506 ML 157 155 6 160 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 21 31 G U - - MP 162 161 6 166 4 2 2 25 44 -6.969 -7.176 -0.052 -5.590 -3.642 -2.404 -3.811 1.118 -4.549 -5.273 -0.149 -3.831 -3.466 1.322 -3.989 3.110 -0.507 -4.476 -2.091 -2.506 ML 163 161 6 166 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 22 - U - - - ML 168 167 6 170 3 1 1 22 41 -7.984 -0.020 -6.638 -1.522 -1.512 -2.257 1.628 D 169 167 6 170 3 0 0 21 40 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 23 - G - - - ML 171 170 3 173 3 1 1 21 40 -7.984 -0.020 -6.638 -1.622 -2.849 1.733 -2.236 D 172 170 3 173 3 0 0 20 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 24 - C - - - ML 174 173 3 176 3 1 1 20 39 -7.984 -0.020 -6.638 -1.788 1.637 -2.614 -1.192 D 175 173 3 176 3 0 0 19 38 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 25 - G - - - ML 177 176 3 179 3 1 1 19 37 -7.984 -0.020 -6.638 -1.622 -2.849 1.733 -2.236 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 26 - C - - - ML 180 179 3 182 3 1 1 18 36 -7.984 -0.020 -6.638 -1.788 1.637 -2.614 -1.192 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 27 - G - - - ML 183 182 3 185 3 1 1 16 35 -7.984 -0.020 -6.638 -1.622 -2.849 1.733 -2.236 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 28 - C - - - ML 186 185 3 188 3 1 1 15 33 -7.984 -0.020 -6.638 -1.788 1.637 -2.614 -1.192 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 29 - U - - - ML 189 188 3 191 3 1 1 13 31 -7.984 -0.020 -6.638 -1.522 -1.512 -2.257 1.628 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 30 - U - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.522 -1.512 -2.257 1.628 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sau-30 ACC RF02388 DESC Staphylococcus sRNA sau-30 LENG 64 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 17:22:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02388/CM NSEQ 2 EFFN 1.722656 CKSUM 1525514797 STATS LOCAL MSV -8.0986 0.72722 STATS LOCAL VITERBI -9.3552 0.72722 STATS LOCAL FORWARD -3.3768 0.72722 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27745 1.59481 1.45569 1.25504 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.45828 0.29996 3.02435 2.07961 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.31357 2.32929 2.81650 0.29583 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.45828 0.29996 3.02435 2.07961 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.22080 2.91745 2.67367 2.58951 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.22080 2.91745 2.67367 2.58951 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.45828 0.29996 3.02435 2.07961 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.22080 2.91745 2.67367 2.58951 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.22080 2.91745 2.67367 2.58951 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.22080 2.91745 2.67367 2.58951 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.87158 0.33444 2.60704 1.87146 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.63544 1.66364 2.34478 0.44162 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.63665 1.66364 2.34522 0.44142 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.75763 2.17518 1.25296 2.02513 13 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.63667 1.66364 2.34523 0.44141 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.78251 2.56230 0.40253 2.45302 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.50104 2.40253 1.57045 2.34696 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.63312 1.66363 2.34393 0.44200 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.78573 2.56750 0.40018 2.46040 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.78586 2.56771 0.40009 2.46070 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 1.78588 2.56775 0.40007 2.46075 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.78585 2.56771 0.40009 2.46070 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.31357 2.32929 2.81650 0.29583 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.36199 3.18834 0.22140 2.76259 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.45828 0.29996 3.02435 2.07961 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.36199 3.18834 0.22140 2.76259 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.45828 0.29996 3.02435 2.07961 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.36199 3.18834 0.22140 2.76259 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.45828 0.29996 3.02435 2.07961 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.31357 2.32929 2.81650 0.29583 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.31357 2.32929 2.81650 0.29583 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.67798 1.64171 2.37321 0.43933 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.67839 1.64171 2.37335 0.43927 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.67888 1.64170 2.37353 0.43919 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.67947 1.64170 2.37375 0.43909 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.50241 2.52302 1.50031 2.38980 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.58221 1.82882 2.22034 0.42279 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.68214 1.64169 2.37472 0.43867 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.36199 3.18834 0.22140 2.76259 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 1.01165 1.94672 2.08731 0.99528 39 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.50237 2.52313 1.50031 2.38996 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.24911 0.97933 1.97953 0.96545 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.50210 2.52393 1.50030 2.39106 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.50192 2.52447 1.50029 2.39181 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.14929 2.77942 0.28777 2.63910 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.22080 2.91745 2.67367 2.58951 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.31357 2.32929 2.81650 0.29583 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.22080 2.91745 2.67367 2.58951 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.01165 1.94672 2.08731 0.99528 48 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.45828 0.29996 3.02435 2.07961 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.36199 3.18834 0.22140 2.76259 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.36199 3.18834 0.22140 2.76259 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.22080 2.91745 2.67367 2.58951 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.83105 1.08766 2.36467 0.89460 53 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.31357 2.32929 2.81650 0.29583 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.31357 2.32929 2.81650 0.29583 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.90811 2.30603 1.05851 1.89656 56 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.31357 2.32929 2.81650 0.29583 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.90811 2.30603 1.05851 1.89656 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.90811 2.30603 1.05851 1.89656 59 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.22080 2.91745 2.67367 2.58951 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.45828 0.29996 3.02435 2.07961 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.22080 2.91745 2.67367 2.58951 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 1.61337 2.00796 1.17229 1.03039 63 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 1.01165 1.94672 2.08731 0.99528 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //