INFERNAL1/a [1.1.4 | Dec 2020] NAME PyrD_leader ACC RF02373 DESC PyrD leader STATES 226 NODES 70 CLEN 74 W 90 ALPH RNA RF no CONS yes MAP yes DATE Fri Feb 28 01:22:25 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 27 EFFN 2.481812 CKSUM 2806110341 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 49.00 NC 46.30 EFP7GF -9.1700 0.71879 ECMLC 0.50205 -10.97761 1.71806 1600000 703578 0.001706 ECMGC 0.43336 -15.51819 -2.97470 1600000 91792 0.004358 ECMLI 0.50090 -7.58138 3.99141 1600000 395114 0.003037 ECMGI 0.49575 -9.41854 0.85323 1600000 65102 0.006144 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 110 -7.158 -7.365 -0.074 -4.764 IL 1 1 2 1 4 1 30 94 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 93 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 30 90 110 -8.135 -0.018 -6.789 1.784 -2.718 -2.316 -2.296 D 4 2 3 5 3 0 24 88 108 -6.418 -1.931 -0.462 IL 5 5 3 5 3 1 29 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 29 89 109 -8.135 -0.018 -6.789 -1.808 -1.748 -2.556 1.699 D 7 5 3 8 3 0 24 87 107 -6.418 -1.258 -0.810 IL 8 8 3 8 3 1 28 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 28 88 108 -8.161 -0.018 -6.815 -1.856 -1.789 -2.606 1.709 D 10 8 3 11 3 0 23 86 106 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 27 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 28 87 107 -8.161 -0.018 -6.815 -2.223 1.732 -3.055 -1.541 D 13 11 3 14 3 0 22 85 105 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 27 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 27 86 106 -8.161 -0.018 -6.815 -1.362 1.558 -2.407 -1.064 D 16 14 3 17 3 0 21 84 104 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 26 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 26 85 104 -8.161 -0.018 -6.815 -0.090 1.007 -1.572 -0.487 D 19 17 3 20 3 0 20 83 103 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 25 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 25 84 103 -8.161 -0.018 -6.815 -0.107 -1.012 -1.410 1.137 D 22 20 3 23 3 0 19 82 102 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 24 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 24 83 102 -8.161 -0.018 -6.815 -1.856 -1.789 -2.606 1.709 D 25 23 3 26 3 0 19 81 101 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 23 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 24 82 101 -8.161 -0.018 -6.815 -1.856 -1.789 -2.606 1.709 D 28 26 3 29 3 0 18 80 100 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 23 81 100 -8.161 -0.018 -6.815 -0.399 0.194 -0.463 0.457 D 31 29 3 32 3 0 17 79 99 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 22 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 33 32 3 35 3 1 22 79 99 -8.161 -0.018 -6.815 0.271 -0.618 0.085 0.113 D 34 32 3 35 3 0 16 78 98 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 21 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - g - - - ML 36 35 3 38 3 1 21 78 98 -8.161 -0.018 -6.815 -0.230 -0.307 0.321 0.124 D 37 35 3 38 3 0 16 77 97 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - u - - - ML 39 38 3 41 3 1 21 77 97 -8.161 -0.018 -6.815 -0.086 0.084 -0.102 0.093 D 40 38 3 41 3 0 15 76 96 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 42 41 3 44 3 1 20 76 96 -5.196 -0.053 -6.815 0.143 -0.035 -0.468 0.259 D 43 41 3 44 3 0 14 75 94 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 78 97 -1.530 -0.736 -4.230 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - c - - - ML 45 44 3 47 3 1 19 75 95 -8.161 -0.018 -6.815 -0.287 0.291 -0.001 -0.062 D 46 44 3 47 3 0 13 74 93 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - g - - - ML 48 47 3 50 3 1 18 74 93 -8.161 -0.018 -6.815 -0.114 -0.797 0.804 -0.406 D 49 47 3 50 3 0 12 73 92 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 17 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - a - - - ML 51 50 3 53 3 1 18 73 92 -8.161 -0.018 -6.815 0.528 -0.426 -0.230 -0.057 D 52 50 3 53 3 0 12 72 91 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 16 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - g - - - ML 54 53 3 56 3 1 17 72 91 -8.161 -0.018 -6.815 0.046 -0.563 0.393 -0.033 D 55 53 3 56 3 0 11 71 90 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - a - - - ML 57 56 3 59 3 1 16 71 90 -8.161 -0.018 -6.815 0.921 -0.469 -1.135 -0.107 D 58 56 3 59 3 0 10 69 89 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - U - - - ML 60 59 3 62 3 1 15 70 89 -8.161 -0.018 -6.815 -1.856 -1.789 -2.606 1.709 D 61 59 3 62 3 0 9 68 88 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 14 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - c - - - ML 63 62 3 65 3 1 15 69 88 -8.161 -0.018 -6.815 -0.031 0.612 -0.576 -0.283 D 64 62 3 65 3 0 8 67 87 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - g - - - ML 66 65 3 68 3 1 14 68 87 -8.161 -0.018 -6.815 -0.395 -0.443 0.897 -0.641 D 67 65 3 68 3 0 8 66 86 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - C - - - ML 69 68 3 71 3 1 13 67 86 -8.161 -0.018 -6.815 -0.174 1.062 -1.622 -0.512 D 70 68 3 71 3 0 7 65 85 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 72 71 3 74 3 1 12 66 85 -8.161 -0.018 -6.815 0.581 -0.300 -0.580 0.032 D 73 71 3 74 3 0 6 64 84 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - c - - - ML 75 74 3 77 3 1 12 64 84 -8.161 -0.018 -6.815 -0.479 0.416 0.266 -0.424 D 76 74 3 77 3 0 5 63 83 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - - - ML 78 77 3 80 3 1 11 63 83 -8.161 -0.018 -6.815 1.792 -2.770 -2.362 -2.353 D 79 77 3 80 3 0 5 62 81 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 1 10 62 81 -8.161 -0.018 -6.815 -1.856 -1.789 -2.606 1.709 D 82 80 3 83 3 0 4 61 80 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - A - - - ML 84 83 3 86 3 1 9 61 80 -8.161 -0.018 -6.815 1.792 -2.770 -2.362 -2.353 D 85 83 3 86 3 0 3 60 79 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 8 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 87 86 3 89 3 1 9 60 79 -8.161 -0.018 -6.815 1.792 -2.770 -2.362 -2.353 D 88 86 3 89 3 0 3 59 78 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 7 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 90 89 3 92 3 1 8 59 78 -8.161 -0.018 -6.815 -1.856 -1.789 -2.606 1.709 D 91 89 3 92 3 0 2 58 77 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 93 92 3 95 3 1 7 58 77 -8.161 -0.018 -6.815 1.395 -0.952 -1.475 -1.016 D 94 92 3 95 3 0 2 57 76 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - c - - - ML 96 95 3 98 3 1 7 57 76 -8.161 -0.018 -6.815 -0.505 0.957 -0.734 -0.408 D 97 95 3 98 3 0 1 56 75 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 99 98 3 101 3 1 6 56 75 -8.161 -0.018 -6.815 -0.606 -0.542 1.055 -0.791 D 100 98 3 101 3 0 0 55 74 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - c - - - ML 102 101 3 104 3 1 5 55 74 -8.161 -0.018 -6.815 -0.622 0.870 -0.569 -0.237 D 103 101 3 104 3 0 0 54 73 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 4 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 105 104 3 107 3 1 4 54 72 -8.539 -0.016 -6.857 -1.194 1.381 -1.675 -0.632 D 106 104 3 107 3 0 0 52 71 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 3 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 75 - C - - MR 108 107 3 110 3 1 4 53 71 -8.539 -0.016 -6.857 -1.338 1.356 -2.182 -0.278 D 109 107 3 110 3 0 0 51 70 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 2 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 74 - A - - MR 111 110 3 113 3 1 3 52 70 -8.539 -0.016 -6.857 1.370 -1.466 -1.466 -0.531 D 112 110 3 113 3 0 0 50 69 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 2 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 73 - U - - MR 114 113 3 116 3 1 3 51 69 -8.539 -0.016 -6.857 -1.856 -1.789 -2.606 1.709 D 115 113 3 116 3 0 0 49 68 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 72 - G - - MR 117 116 3 119 3 1 2 50 68 -8.539 -0.016 -6.857 -1.995 -3.274 1.802 -2.662 D 118 116 3 119 3 0 0 48 67 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 71 - U - - MR 120 119 3 122 3 1 2 49 67 -8.539 -0.016 -6.857 -1.856 -1.789 -2.606 1.709 D 121 119 3 122 3 0 0 47 66 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 70 - A - - MR 123 122 3 125 3 1 2 48 66 -8.539 -0.016 -6.857 1.792 -2.770 -2.362 -2.353 D 124 122 3 125 3 0 0 46 65 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 69 - C - - MR 126 125 3 128 3 1 1 47 65 -8.539 -0.016 -6.857 -2.223 1.732 -3.055 -1.541 D 127 125 3 128 3 0 0 45 64 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 68 - U - - MR 129 128 3 131 3 1 1 46 64 -8.539 -0.016 -6.857 -0.745 -1.210 -1.776 1.422 D 130 128 3 131 3 0 0 44 63 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 67 - U - - MR 132 131 3 134 3 1 1 45 63 -8.539 -0.016 -6.857 -0.697 -0.478 -1.083 1.133 D 133 131 3 134 3 0 0 43 62 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 66 - g - - MR 135 134 3 137 3 1 1 44 62 -8.539 -0.016 -6.857 -0.220 -1.354 0.991 -0.392 D 136 134 3 137 3 0 0 42 61 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 65 - A - - MR 138 137 3 140 3 1 1 43 61 -8.539 -0.016 -6.857 1.792 -2.770 -2.362 -2.353 D 139 137 3 140 3 0 0 41 60 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 64 - G - - MR 141 140 3 143 3 1 1 42 60 -8.539 -0.016 -6.857 -1.995 -3.274 1.802 -2.662 D 142 140 3 143 3 0 0 40 59 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 63 - A - - MR 144 143 3 146 3 1 1 41 59 -8.539 -0.016 -6.857 1.792 -2.770 -2.362 -2.353 D 145 143 3 146 3 0 0 39 58 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 62 - G - - MR 147 146 3 149 3 1 1 40 58 -8.539 -0.016 -6.857 -1.995 -3.274 1.802 -2.662 D 148 146 3 149 3 0 0 38 57 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 61 - G - - MR 150 149 3 152 3 1 1 39 57 -8.539 -0.016 -6.857 -1.995 -3.274 1.802 -2.662 D 151 149 3 152 3 0 0 37 56 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 60 - A - - MR 153 152 3 155 3 1 1 38 56 -8.539 -0.016 -6.857 1.792 -2.770 -2.362 -2.353 D 154 152 3 155 3 0 0 36 55 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 59 - C - - MR 156 155 3 158 3 1 1 37 55 -8.539 -0.138 -3.493 -2.223 1.732 -3.055 -1.541 D 157 155 3 158 3 0 0 35 54 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 53 ] - 58 - C - - MR 159 158 3 161 3 1 1 36 54 -8.418 -0.018 -6.736 -1.145 1.270 -1.973 -0.183 D 160 158 3 161 3 0 0 34 53 -7.205 -0.682 -1.435 IR 161 161 3 161 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 57 - U - - MR 162 161 3 164 3 1 1 35 53 -8.539 -0.016 -6.857 -0.745 -1.210 -1.776 1.422 D 163 161 3 164 3 0 0 33 52 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 55 ] - 56 - A - - MR 165 164 3 167 3 1 1 34 52 -8.539 -0.060 -4.708 1.792 -2.770 -2.362 -2.353 D 166 164 3 167 3 0 0 32 51 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 56 ] - 55 - A - - MR 168 167 3 170 5 1 1 33 51 -7.225 -0.036 -7.041 -7.253 -8.144 1.777 -2.676 -2.278 -2.249 D 169 167 3 170 5 0 0 31 50 -5.563 -0.588 -3.189 -4.620 -2.614 IR 170 170 3 170 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 37 54 C G - - MP 171 170 3 175 6 2 2 32 50 -9.191 -9.131 -0.020 -7.907 -8.187 -8.582 -4.530 -4.491 -4.217 -0.679 -2.897 -4.623 3.489 -3.709 -4.257 -0.473 -4.532 -2.462 0.949 -4.582 -0.582 -3.085 ML 172 170 3 175 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 38 53 C G - - MP 177 176 6 181 6 2 2 30 48 -9.191 -9.131 -0.020 -7.907 -8.187 -8.582 -4.983 -4.926 -4.597 -1.123 -3.227 -4.952 3.665 -4.080 -4.664 -0.937 -4.875 -2.881 0.239 -5.022 -0.947 -3.490 ML 178 176 6 181 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 39 52 C G - - MP 183 182 6 187 6 2 2 28 46 -9.191 -9.131 -0.020 -7.907 -8.187 -8.582 -4.983 -4.926 -4.597 -1.123 -3.227 -4.952 3.665 -4.080 -4.664 -0.937 -4.875 -2.881 0.239 -5.022 -0.947 -3.490 ML 184 182 6 187 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 40 51 G C - - MP 189 188 6 193 6 2 2 26 44 -9.191 -9.131 -0.020 -7.907 -8.187 -8.582 -5.128 -3.280 -5.274 -0.064 -5.775 -4.841 -1.043 -5.536 -4.571 3.718 -4.882 -0.997 -1.418 -4.718 -3.102 -4.144 ML 190 188 6 193 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 41 50 G C - - MP 195 194 6 199 6 2 2 24 42 -9.191 -9.131 -0.020 -7.907 -8.187 -8.582 -3.949 -2.804 -3.902 0.724 -4.086 -4.379 0.456 -4.185 -3.943 3.250 -4.300 -0.499 0.724 -3.825 -1.559 -2.829 ML 196 194 6 199 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 42 49 U A - - MP 201 200 6 205 4 2 2 22 40 -7.158 -7.365 -0.046 -5.779 -4.670 -4.505 -4.454 -0.768 -3.299 -4.973 1.037 -4.026 -4.455 -0.576 -4.804 -2.388 3.516 -4.801 -0.964 -3.225 ML 202 200 6 205 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 205 205 5 205 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 43 - U - - - ML 207 206 6 209 3 1 1 19 37 -8.161 -0.018 -6.815 -1.489 -1.250 -2.230 1.590 D 208 206 6 209 3 0 0 18 37 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 44 - U - - - ML 210 209 3 212 3 1 1 17 36 -8.161 -0.018 -6.815 -0.804 -1.089 -0.878 1.271 D 211 209 3 212 3 0 0 17 35 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 45 - G - - - ML 213 212 3 215 3 1 1 16 35 -8.161 -0.018 -6.815 -1.283 -2.763 1.687 -2.177 D 214 212 3 215 3 0 0 16 34 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 46 - C - - - ML 216 215 3 218 3 1 1 15 33 -8.161 -0.183 -3.109 -1.562 1.493 -2.405 -0.605 D 217 215 3 218 3 0 0 14 33 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 47 - A - - - ML 219 218 3 221 3 1 1 13 31 -7.997 -0.192 -3.052 1.733 -2.438 -2.064 -1.987 D 220 218 3 221 3 0 0 13 31 -7.267 -1.975 -0.436 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 48 - C - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 -1.055 1.282 -1.865 -0.299 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME PyrD_leader ACC RF02373 DESC PyrD leader LENG 74 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Feb 28 01:22:25 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 27 EFFN 2.778442 CKSUM 2806110341 STATS LOCAL MSV -8.8021 0.71879 STATS LOCAL VITERBI -9.2620 0.71879 STATS LOCAL FORWARD -3.7416 0.71879 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32481 1.39201 1.52036 1.32074 1.38629 1.38629 1.38629 1.38629 0.05522 4.04713 3.31729 1.46634 0.26236 0.00000 * 1 0.12994 3.40257 3.11091 3.12342 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03626 4.02818 4.02818 1.46634 0.26236 1.40481 0.28159 2 2.76420 2.70218 3.28737 0.18325 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03626 4.02818 4.02818 1.46634 0.26236 0.67497 0.71166 3 2.79962 2.73171 3.32398 0.17668 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 4 3.08902 0.15846 3.66375 2.58543 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 5 2.42782 0.27231 3.17764 2.22126 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 6 1.46702 0.65156 2.54673 1.77301 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 7 1.47434 2.13592 2.41652 0.57323 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 8 2.79962 2.73171 3.32398 0.17668 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 9 2.79962 2.73171 3.32398 0.17668 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 10 1.69157 1.23521 1.70674 1.06845 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 11 1.19991 1.82440 1.31501 1.31308 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 12 1.56845 1.59740 1.14193 1.30931 12 g - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 13 1.46050 1.31409 1.44694 1.33229 13 c - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 14 1.29010 1.40159 1.71178 1.21064 14 u - - : 1.38629 1.38629 1.38629 1.38629 0.06250 3.14386 4.04713 0.67665 0.70992 1.09861 0.40547 15 1.61222 1.16507 1.37211 1.44781 16 c - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 16 1.48895 1.95581 0.79742 1.70126 17 g - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 17 1.01428 1.68236 1.54327 1.43666 18 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 18 1.36590 1.78338 1.09177 1.42231 19 g - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 19 0.72909 1.71597 2.21111 1.47717 20 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 20 2.79962 2.73171 3.32398 0.17668 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 21 1.42166 0.93513 1.79155 1.61218 22 c - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 22 1.70205 1.69557 0.72872 1.88605 23 g - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 23 1.52957 0.61333 2.58517 1.79310 24 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 24 0.97480 1.59258 1.79646 1.37261 25 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 25 1.76461 1.07106 1.17806 1.72469 26 c - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 26 0.12488 3.43972 3.14457 3.16447 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 27 2.79962 2.73171 3.32398 0.17668 28 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 28 0.12488 3.43972 3.14457 3.16447 29 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 29 0.12488 3.43972 3.14457 3.16447 30 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 30 2.79962 2.73171 3.32398 0.17668 31 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 31 0.39438 2.06644 2.47578 2.16138 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 32 1.78042 0.68702 1.91091 1.71251 33 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 33 1.86654 1.76855 0.61624 2.00404 34 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 34 1.86917 0.74857 1.78816 1.58262 35 c - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 35 2.30915 0.39114 2.61502 1.88915 36 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 36 3.05531 0.31577 2.84667 1.79802 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 37 3.38427 0.19683 3.19258 2.26624 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 38 3.39178 0.19616 3.19640 2.26762 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 39 2.71129 3.43655 0.14263 3.37259 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 40 2.13859 2.41008 0.41956 2.00224 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 41 3.19839 2.07969 2.97617 0.24435 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 42 2.51439 2.31274 3.03004 0.25905 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 43 2.00589 2.19761 2.01828 0.47561 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 44 2.35650 3.42021 0.19400 3.01826 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 45 2.57782 0.31967 3.16864 1.86041 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.16281 4.04713 2.01911 1.46634 0.26236 1.09861 0.40547 46 0.16191 3.19878 2.92684 2.89848 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.17413 3.92462 1.96567 1.46634 0.26236 1.40675 0.28096 47 2.20084 0.45890 2.76944 1.63674 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04456 3.82632 3.82632 1.46634 0.26236 0.15021 1.96989 48 0.27696 3.16393 1.91639 2.94657 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 49 2.16571 0.47222 2.23512 1.86604 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 50 3.56677 0.16939 3.27793 2.40939 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 51 2.54824 3.36818 0.16837 3.16320 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 52 2.54922 3.36962 0.16814 3.16488 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 53 2.03404 3.02229 0.27176 2.83926 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.07131 4.04713 2.96894 1.46634 0.26236 1.09861 0.40547 54 0.13426 3.37210 3.08333 3.08977 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03684 4.01266 4.01266 1.46634 0.26236 0.51904 0.90409 55 0.12488 3.43972 3.14457 3.16447 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 56 1.95200 2.29035 2.69577 0.37209 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.13541 4.04713 2.21489 1.46634 0.26236 1.09861 0.40547 57 2.26332 0.47064 2.84509 1.54524 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.03923 3.95096 3.95096 1.46634 0.26236 0.27771 1.41681 58 3.08902 0.15846 3.66375 2.58543 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 59 0.12488 3.43972 3.14457 3.16447 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 60 2.90348 3.80758 0.11769 3.38164 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 61 2.90348 3.80758 0.11769 3.38164 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 62 0.12488 3.43972 3.14457 3.16447 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 63 2.90348 3.80758 0.11769 3.38164 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 64 0.12488 3.43972 3.14457 3.16447 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 65 1.56458 2.37264 0.66975 1.68333 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 66 1.91753 1.73228 2.16428 0.57747 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 67 1.95200 2.29035 2.69577 0.37209 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 68 3.08902 0.15846 3.66375 2.58543 69 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 69 0.12488 3.43972 3.14457 3.16447 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 70 2.79962 2.73171 3.32398 0.17668 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 71 2.90348 3.80758 0.11769 3.38164 72 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 72 2.79962 2.73171 3.32398 0.17668 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 73 0.41333 2.45840 2.46459 1.78413 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04713 4.04713 1.46634 0.26236 1.09861 0.40547 74 2.40607 0.41415 2.99942 1.61389 75 C - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.02951 * 1.46634 0.26236 0.00000 * //