INFERNAL1/a [1.1.5 | Sep 2023] NAME Yfr13 ACC RF02364 DESC Cyanobacterial functional RNA 13 STATES 313 NODES 87 CLEN 98 W 117 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 20:36:18 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02364/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 1.062988 CKSUM 1990563049 NULL 0.000 0.000 0.000 0.000 GA 39.00 TC 39.60 NC 37.90 EFP7GF -6.2809 0.71857 ECMLC 0.58288 -9.23585 0.94945 1600000 454477 0.002640 ECMGC 0.37441 -12.78090 -1.72246 1600000 25132 0.015916 ECMLI 0.47573 -8.94426 2.97580 1600000 348290 0.003445 ECMGI 0.41037 -7.19175 2.89656 1600000 25120 0.015924 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 117 138 -6.495 -7.740 -0.105 -4.194 IL 1 1 2 1 4 14 47 118 139 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 47 119 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - A - - MR 3 2 3 5 3 14 46 117 138 -8.008 -0.024 -6.326 1.498 -1.640 -1.344 -1.119 D 4 2 3 5 3 12 45 116 137 -6.390 -1.568 -0.620 IR 5 5 3 5 3 14 47 118 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 101 - A - - MR 6 5 3 8 2 13 45 116 137 -7.894 -0.006 1.498 -1.640 -1.344 -1.119 D 7 5 3 8 2 12 44 115 136 -4.432 -0.068 IR 8 8 3 8 2 13 46 117 138 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 3 ] - - - - - - B 9 8 3 10 128 12 44 115 136 [ BEGL 4 ] - - - - - - S 10 9 1 11 1 0 1 53 72 0.000 [ BIF 5 ] - - - - - - B 11 10 1 12 53 0 1 53 72 [ BEGL 6 ] - - - - - - S 12 11 1 13 4 0 0 27 46 -0.051 -6.642 -6.049 -6.689 [ MATP 7 ] 1 13 G C - - MP 13 12 1 17 6 2 2 27 46 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -4.023 -2.758 -4.083 0.655 -4.222 -4.390 0.247 -4.253 -3.819 3.403 -4.213 -0.443 -0.164 -3.987 -1.758 -2.971 ML 14 12 1 17 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 15 12 1 17 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 16 12 1 17 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 17 17 5 17 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 18 18 6 18 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 2 12 a u - - MP 19 18 6 23 6 2 2 25 44 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.269 -2.447 -3.315 2.821 -3.394 -4.428 0.880 -3.381 -3.236 1.659 -3.756 -0.024 0.455 -3.702 -1.067 -2.187 ML 20 18 6 23 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 21 18 6 23 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 22 18 6 23 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 23 23 5 23 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 24 24 6 24 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 3 11 G C - - MP 25 24 6 29 6 2 2 23 42 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -4.023 -2.758 -4.083 0.655 -4.222 -4.390 0.247 -4.253 -3.819 3.403 -4.213 -0.443 -0.164 -3.987 -1.758 -2.971 ML 26 24 6 29 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 27 24 6 29 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 28 24 6 29 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 29 29 5 29 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 30 30 6 30 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 4 10 G C - - MP 31 30 6 35 4 2 2 21 40 -6.540 -6.747 -0.071 -5.162 -4.023 -2.758 -4.083 0.655 -4.222 -4.390 0.247 -4.253 -3.819 3.403 -4.213 -0.443 -0.164 -3.987 -1.758 -2.971 ML 32 30 6 35 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 33 30 6 35 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 34 30 6 35 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 35 35 5 35 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 36 36 6 36 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 5 - C - - - ML 37 36 6 39 3 1 1 18 36 -7.590 -0.027 -6.244 -0.892 1.282 -1.670 -0.485 D 38 36 6 39 3 0 0 17 36 -6.174 -1.687 -0.566 IL 39 39 3 39 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 6 - C - - - ML 40 39 3 42 3 1 1 16 35 -7.590 -0.027 -6.244 -0.892 1.282 -1.670 -0.485 D 41 39 3 42 3 0 0 16 35 -6.174 -1.687 -0.566 IL 42 42 3 42 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 7 - A - - - ML 43 42 3 45 3 1 1 15 34 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 44 42 3 45 3 0 0 15 33 -6.174 -1.687 -0.566 IL 45 45 3 45 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 8 - A - - - ML 46 45 3 48 3 1 1 13 32 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 47 45 3 48 3 0 0 13 32 -6.174 -1.687 -0.566 IL 48 48 3 48 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 9 - A - - - ML 49 48 3 51 2 1 1 1 1 * 0.000 1.498 -1.640 -1.344 -1.119 D 50 48 3 51 2 0 0 0 0 * 0.000 IL 51 51 3 51 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 16 ] - - - - - - E 52 51 3 -1 0 0 0 0 0 [ BEGR 17 ] - - - - - - S 53 11 1 54 3 0 0 39 57 -7.590 -0.027 -6.244 IL 54 54 2 54 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - A - - - ML 55 54 2 57 3 1 1 38 57 -7.590 -0.108 -3.898 1.168 -1.225 -0.519 -0.673 D 56 54 2 57 3 0 0 37 56 -6.174 -1.687 -0.566 IL 57 57 3 57 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 58 57 3 60 3 1 1 37 56 -7.510 -0.028 -6.164 1.433 -1.493 -1.210 -0.962 D 59 57 3 60 3 0 0 36 55 -6.643 -0.994 -1.035 IL 60 60 3 60 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - u - - - ML 61 60 3 63 5 1 1 36 54 -6.773 -0.049 -6.588 -6.800 -7.692 -0.101 -0.326 -0.990 0.821 D 62 60 3 63 5 0 0 35 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 63 63 3 63 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 38 g c - - MP 64 63 3 68 6 2 2 35 53 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.478 -2.605 -3.476 0.924 -3.345 -4.057 1.274 -3.613 -3.475 2.970 -3.884 -0.347 0.607 -3.503 -0.945 -2.406 ML 65 63 3 68 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 3 68 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 3 68 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 37 a u - - MP 70 69 6 74 6 2 2 33 51 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.269 -2.447 -3.315 2.821 -3.394 -4.428 0.880 -3.381 -3.236 1.659 -3.756 -0.024 0.455 -3.702 -1.067 -2.187 ML 71 69 6 74 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 36 G C - - MP 76 75 6 80 6 2 2 31 49 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -4.023 -2.758 -4.083 0.655 -4.222 -4.390 0.247 -4.253 -3.819 3.403 -4.213 -0.443 -0.164 -3.987 -1.758 -2.971 ML 77 75 6 80 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 79 75 6 80 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 80 80 5 80 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 81 81 6 81 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 35 u a - - MP 82 81 6 86 6 2 2 29 47 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.307 -3.172 -3.218 0.482 -2.294 -3.819 2.323 -2.960 -3.246 0.860 -3.648 -1.160 2.351 -3.453 0.011 -2.137 ML 83 81 6 86 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 84 81 6 86 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 85 81 6 86 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 86 86 5 86 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 87 87 6 87 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 34 c g - - MP 88 87 6 92 6 2 2 27 45 -8.965 -8.904 -0.048 -5.551 -7.961 -8.356 -2.410 -2.282 -2.529 1.645 -2.270 -3.342 1.712 -1.319 -2.573 1.489 -3.092 -0.413 1.627 -2.669 -0.145 -1.604 ML 89 87 6 92 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 90 87 6 92 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 91 87 6 92 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 92 92 5 92 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 93 93 6 93 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 33 g c - - MP 94 93 6 98 6 2 2 25 43 -8.941 -8.881 -0.024 -7.657 -7.937 -8.332 -1.973 -0.944 -2.162 1.441 -2.150 -2.937 1.437 -0.338 -2.174 1.618 -2.679 0.268 1.207 -2.277 -0.208 -1.312 ML 95 93 6 98 6 1 1 24 42 -6.511 -6.857 -0.994 -1.266 -6.707 -4.237 0.086 0.230 -0.599 0.145 MR 96 93 6 98 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 97 93 6 98 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 98 98 5 98 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 99 99 6 99 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 32 a u - - MP 100 99 6 104 6 2 2 23 41 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.086 -2.271 -3.173 2.606 -3.446 -4.300 0.786 -3.334 -3.103 1.850 -3.636 0.621 0.474 -3.500 -1.134 -2.064 ML 101 99 6 104 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 102 99 6 104 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 103 99 6 104 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 104 104 5 104 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 105 105 6 105 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 31 c g - - MP 106 105 6 110 4 2 2 21 39 -6.540 -2.416 -0.370 -5.162 -2.524 -2.416 -2.630 1.332 -2.235 -3.409 2.217 -1.154 -2.656 1.324 -3.162 -0.554 1.424 -2.777 -0.065 -1.674 ML 107 105 6 110 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 108 105 6 110 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 109 105 6 110 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 110 110 5 110 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 111 111 6 111 3 1 1 20 39 -1.808 -0.577 -4.508 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - U - - - ML 112 111 6 114 3 1 1 18 36 -7.590 -0.027 -6.244 -0.834 -0.954 -1.522 1.364 D 113 111 6 114 3 0 0 17 36 -6.174 -1.687 -0.566 IL 114 114 3 114 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - c - - - ML 115 114 3 117 3 1 1 16 35 -7.590 -0.027 -6.244 -0.112 0.783 -1.131 -0.157 D 116 114 3 117 3 0 0 16 35 -6.174 -1.687 -0.566 IL 117 117 3 117 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - U - - - ML 118 117 3 120 3 1 1 15 34 -7.590 -0.027 -6.244 -0.834 -0.954 -1.522 1.364 D 119 117 3 120 3 0 0 15 33 -6.174 -1.687 -0.566 IL 120 120 3 120 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - a - - - ML 121 120 3 123 3 1 1 13 32 -7.590 -0.027 -6.244 0.659 -0.748 -0.446 0.127 D 122 120 3 123 3 0 0 13 32 -6.174 -1.687 -0.566 IL 123 123 3 123 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - c - - - ML 124 123 3 126 2 1 1 1 1 * 0.000 -0.579 0.913 -1.346 0.077 D 125 123 3 126 2 0 0 0 0 * 0.000 IL 126 126 3 126 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 127 126 3 -1 0 0 0 0 0 [ BEGR 35 ] - - - - - - S 128 9 1 129 3 0 18 77 97 -7.590 -0.027 -6.244 IL 129 129 2 129 3 1 19 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - C - - - ML 130 129 2 132 3 1 18 77 97 -7.590 -0.027 -6.244 -0.892 1.282 -1.670 -0.485 D 131 129 2 132 3 0 14 75 95 -6.174 -1.687 -0.566 IL 132 132 3 132 3 1 18 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - A - - - ML 133 132 3 135 3 1 17 76 96 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 134 132 3 135 3 0 14 74 94 -6.174 -1.687 -0.566 IL 135 135 3 135 3 1 17 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - A - - - ML 136 135 3 138 3 1 16 74 95 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 137 135 3 138 3 0 13 73 93 -6.174 -1.687 -0.566 IL 138 138 3 138 3 1 16 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - G - - - ML 139 138 3 141 3 1 15 73 94 -7.590 -0.027 -6.244 -0.795 -1.871 1.450 -1.257 D 140 138 3 141 3 0 13 72 92 -6.174 -1.687 -0.566 IL 141 141 3 141 3 1 15 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - - - ML 142 141 3 144 3 1 14 72 93 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 143 141 3 144 3 0 12 71 91 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 14 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - C - - - ML 145 144 3 147 3 1 13 71 92 -7.590 -0.027 -6.244 -0.892 1.282 -1.670 -0.485 D 146 144 3 147 3 0 12 70 90 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 14 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - A - - - ML 148 147 3 150 2 1 12 70 90 -7.894 -0.006 1.498 -1.640 -1.344 -1.119 D 149 147 3 150 2 0 11 69 89 -8.445 -0.004 IL 150 150 3 150 2 1 13 71 91 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 43 ] - - - - - - B 151 150 3 152 250 0 11 69 89 [ BEGL 44 ] - - - - - - S 152 151 1 153 4 0 0 48 68 -0.051 -6.642 -6.049 -6.689 [ MATP 45 ] 46 80 u a - - MP 153 152 1 157 6 2 2 48 68 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.524 -3.306 -3.429 0.341 -2.530 -4.048 1.778 -3.171 -3.443 0.736 -3.846 -1.220 2.866 -3.693 -0.223 -2.323 ML 154 152 1 157 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 1 157 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 1 157 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 47 79 a u - - MP 159 158 6 163 6 2 2 46 66 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.269 -2.447 -3.315 2.821 -3.394 -4.428 0.880 -3.381 -3.236 1.659 -3.756 -0.024 0.455 -3.702 -1.067 -2.187 ML 160 158 6 163 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 48 78 g c - - MP 165 164 6 169 6 2 2 44 64 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.046 -2.134 -3.162 1.858 -3.527 -4.260 0.716 -3.325 -3.040 1.960 -3.554 1.938 0.414 -3.485 -1.197 -2.025 ML 166 164 6 169 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 49 77 a u - - MP 171 170 6 175 6 2 2 42 62 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.269 -2.447 -3.315 2.821 -3.394 -4.428 0.880 -3.381 -3.236 1.659 -3.756 -0.024 0.455 -3.702 -1.067 -2.187 ML 172 170 6 175 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 76 u a - - MP 177 176 6 181 6 2 2 40 60 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.524 -3.306 -3.429 0.341 -2.530 -4.048 1.778 -3.171 -3.443 0.736 -3.846 -1.220 2.866 -3.693 -0.223 -2.323 ML 178 176 6 181 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 75 u a - - MP 183 182 6 187 6 2 2 38 58 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.278 -3.175 -3.224 0.440 -2.368 -3.854 1.917 -3.015 -3.253 0.794 -3.675 -1.202 2.603 -3.444 0.501 -2.156 ML 184 182 6 187 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 74 G C - - MP 189 188 6 193 6 2 2 36 56 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -4.023 -2.758 -4.083 0.655 -4.222 -4.390 0.247 -4.253 -3.819 3.403 -4.213 -0.443 -0.164 -3.987 -1.758 -2.971 ML 190 188 6 193 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 73 a u - - MP 195 194 6 199 4 2 2 34 54 -6.540 -6.747 -0.071 -5.162 -3.038 -2.233 -3.122 2.269 -3.381 -4.139 0.861 -3.323 -3.083 2.204 -3.596 0.638 0.559 -3.365 -1.060 -2.034 ML 196 194 6 199 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 4 1 1 34 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 198 194 6 199 4 0 0 33 53 -4.568 -4.250 -2.265 -0.520 IL 199 199 5 199 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 200 200 6 200 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - u - - - ML 201 200 6 203 3 1 1 32 51 -8.008 -0.024 -6.326 -0.430 0.127 -1.161 0.781 D 202 200 6 203 3 0 0 30 49 -5.620 -0.734 -1.403 IL 203 203 3 203 3 1 1 32 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 72 - g - - MR 204 203 3 206 5 1 1 31 50 -6.773 -0.049 -6.588 -6.800 -7.692 0.089 -0.778 0.292 0.176 D 205 203 3 206 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 206 206 3 206 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 55 71 u a - - MP 207 206 3 211 6 2 2 30 49 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.524 -3.306 -3.429 0.341 -2.530 -4.048 1.778 -3.171 -3.443 0.736 -3.846 -1.220 2.866 -3.693 -0.223 -2.323 ML 208 206 3 211 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 3 211 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 3 211 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 56 70 c g - - MP 213 212 6 217 4 2 2 28 47 -6.540 -2.918 -0.271 -5.162 -2.958 -2.827 -2.975 1.055 -2.290 -3.674 2.346 -2.870 -2.999 1.123 -3.459 -0.864 1.432 -3.155 1.005 -1.938 ML 214 212 6 217 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 216 212 6 217 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 217 217 5 217 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 218 218 6 218 3 1 1 27 46 -1.467 -0.750 -4.524 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - u - - - ML 219 218 6 221 3 1 1 24 43 -7.590 -0.027 -6.244 0.180 -0.324 -0.884 0.610 D 220 218 6 221 3 0 0 23 42 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 222 221 3 224 3 1 1 23 42 -7.590 -0.027 -6.244 1.149 -1.211 -0.482 -0.658 D 223 221 3 224 3 0 0 22 41 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - U - - - ML 225 224 3 227 3 1 1 21 40 -7.590 -0.027 -6.244 -0.834 -0.954 -1.522 1.364 D 226 224 3 227 3 0 0 20 39 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - A - - - ML 228 227 3 230 3 1 1 20 39 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 229 227 3 230 3 0 0 19 38 -6.174 -1.687 -0.566 IL 230 230 3 230 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - U - - - ML 231 230 3 233 3 1 1 19 38 -7.590 -0.027 -6.244 -0.834 -0.954 -1.522 1.364 D 232 230 3 233 3 0 0 18 37 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - A - - - ML 234 233 3 236 3 1 1 18 36 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 235 233 3 236 3 0 0 17 36 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - G - - - ML 237 236 3 239 3 1 1 16 35 -7.590 -0.027 -6.244 -0.795 -1.871 1.450 -1.257 D 238 236 3 239 3 0 0 16 35 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - U - - - ML 240 239 3 242 3 1 1 15 34 -7.590 -0.027 -6.244 -0.834 -0.954 -1.522 1.364 D 241 239 3 242 3 0 0 15 33 -6.174 -1.687 -0.566 IL 242 242 3 242 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - A - - - ML 243 242 3 245 3 1 1 13 32 -7.590 -0.027 -6.244 1.121 -1.034 -0.984 -0.267 D 244 242 3 245 3 0 0 13 32 -6.174 -1.687 -0.566 IL 245 245 3 245 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - c - - - ML 246 245 3 248 2 1 1 1 1 * 0.000 -0.204 0.450 -0.272 -0.093 D 247 245 3 248 2 0 0 0 0 * 0.000 IL 248 248 3 248 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 67 ] - - - - - - E 249 248 3 -1 0 0 0 0 0 [ BEGR 68 ] - - - - - - S 250 151 1 251 3 0 0 35 54 -7.590 -0.027 -6.244 IL 251 251 2 251 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - A - - - ML 252 251 2 254 3 1 1 35 54 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 253 251 2 254 3 0 0 34 53 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - U - - - ML 255 254 3 257 3 1 1 34 53 -7.590 -0.027 -6.244 -0.537 -0.353 -1.250 1.075 D 256 254 3 257 3 0 0 32 52 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - - - ML 258 257 3 260 3 1 1 33 52 -7.590 -0.027 -6.244 1.498 -1.640 -1.344 -1.119 D 259 257 3 260 3 0 0 31 51 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 84 - A - - - ML 261 260 3 263 5 1 1 32 51 -6.773 -0.049 -6.588 -6.800 -7.692 1.192 -1.243 -0.567 -0.694 D 262 260 3 263 5 0 0 30 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 263 263 3 263 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 73 ] 85 100 C G - - MP 264 263 3 268 6 2 2 31 50 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.845 -3.671 -3.645 0.018 -2.543 -4.145 3.251 -3.277 -3.680 0.398 -4.007 -1.611 1.030 -3.955 -0.241 -2.547 ML 265 263 3 268 6 1 1 29 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 266 263 3 268 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 267 263 3 268 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 268 268 5 268 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 269 269 6 269 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 74 ] 86 99 C G - - MP 270 269 6 274 6 2 2 29 48 -8.965 -8.904 -0.023 -7.681 -7.961 -8.356 -3.845 -3.671 -3.645 0.018 -2.543 -4.145 3.251 -3.277 -3.680 0.398 -4.007 -1.611 1.030 -3.955 -0.241 -2.547 ML 271 269 6 274 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 272 269 6 274 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 273 269 6 274 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 274 274 5 274 6 1 1 28 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 275 275 6 275 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 75 ] 87 98 c g - - MP 276 275 6 280 4 2 2 27 46 -6.540 -6.747 -0.071 -5.162 -2.040 -2.043 -2.199 1.075 -1.990 -2.982 1.830 -0.143 -2.233 1.235 -2.755 -0.421 1.382 -2.338 -0.005 0.123 ML 277 275 6 280 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 278 275 6 280 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 279 275 6 280 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 280 280 5 280 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 281 281 6 281 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 88 - u - - - ML 282 281 6 284 3 1 1 24 43 -7.590 -0.027 -6.244 -0.427 0.408 -1.171 0.571 D 283 281 6 284 3 0 0 23 42 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 89 - U - - - ML 285 284 3 287 3 1 1 23 42 -7.590 -0.027 -6.244 -0.834 -0.954 -1.522 1.364 D 286 284 3 287 3 0 0 22 41 -6.174 -1.687 -0.566 IL 287 287 3 287 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 78 ] 90 - u - - - ML 288 287 3 290 3 1 1 21 40 -7.590 -0.027 -6.244 -0.217 0.301 -0.655 0.348 D 289 287 3 290 3 0 0 20 39 -6.174 -1.687 -0.566 IL 290 290 3 290 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 79 ] 91 - u - - - ML 291 290 3 293 3 1 1 20 39 -7.590 -0.027 -6.244 -0.461 -0.077 -1.184 0.915 D 292 290 3 293 3 0 0 19 38 -6.174 -1.687 -0.566 IL 293 293 3 293 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 80 ] 92 - a - - - ML 294 293 3 296 3 1 1 19 38 -7.590 -0.027 -6.244 0.473 -0.853 0.167 -0.095 D 295 293 3 296 3 0 0 18 37 -6.174 -1.687 -0.566 IL 296 296 3 296 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 81 ] 93 - G - - - ML 297 296 3 299 3 1 1 18 36 -7.590 -0.027 -6.244 -0.795 -1.871 1.450 -1.257 D 298 296 3 299 3 0 0 17 36 -6.174 -1.687 -0.566 IL 299 299 3 299 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 82 ] 94 - U - - - ML 300 299 3 302 3 1 1 16 35 -7.590 -0.027 -6.244 -0.834 -0.954 -1.522 1.364 D 301 299 3 302 3 0 0 16 35 -6.174 -1.687 -0.566 IL 302 302 3 302 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 83 ] 95 - A - - - ML 303 302 3 305 3 1 1 15 34 -7.590 -0.027 -6.244 1.154 -1.215 -0.492 -0.662 D 304 302 3 305 3 0 0 15 33 -6.174 -1.687 -0.566 IL 305 305 3 305 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 84 ] 96 - G - - - ML 306 305 3 308 3 1 1 13 32 -7.590 -0.027 -6.244 -0.083 -1.392 1.065 -0.781 D 307 305 3 308 3 0 0 13 32 -6.174 -1.687 -0.566 IL 308 308 3 308 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 85 ] 97 - U - - - ML 309 308 3 311 2 1 1 1 1 * 0.000 -0.834 -0.954 -1.522 1.364 D 310 308 3 311 2 0 0 0 0 * 0.000 IL 311 311 3 311 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 86 ] - - - - - - E 312 311 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Yfr13 ACC RF02364 DESC Cyanobacterial functional RNA 13 LENG 98 MAXL 195 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 20:36:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02364/CM NSEQ 7 EFFN 1.787598 CKSUM 1990563049 STATS LOCAL MSV -9.0074 0.71857 STATS LOCAL VITERBI -10.2433 0.71857 STATS LOCAL FORWARD -3.1490 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22247 1.51842 1.50433 1.33077 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 0.00000 * 1 2.40917 2.94648 0.22035 2.89414 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 2 0.47923 2.44466 1.59779 2.38988 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 3 2.40587 2.94311 0.22128 2.88929 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 4 2.40498 2.94219 0.22153 2.88796 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 5 2.50120 0.28668 3.06902 2.11367 5 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 6 2.50120 0.28668 3.06902 2.11367 6 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 7 0.21211 2.95343 2.70603 2.62888 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 8 0.21211 2.95343 2.70603 2.62888 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 9 0.21211 2.95343 2.70603 2.62888 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 10 3.09899 0.26035 2.77083 2.10775 10 C - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 11 3.09726 0.26056 2.77013 2.10741 11 C - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 12 2.61339 1.85942 2.25661 0.40610 12 U - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 13 3.08376 0.26222 2.76462 2.10477 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 14 0.46766 2.45292 1.80945 2.08951 14 A - - , 1.38629 1.38629 1.38629 1.38629 0.12726 3.78057 2.33625 1.46634 0.26236 1.09861 0.40547 15 0.25113 2.80331 2.57101 2.46501 15 A - - , 1.38629 1.38629 1.38629 1.38629 0.05051 3.70381 3.70381 1.46634 0.26236 0.38650 1.13766 16 1.53334 1.64211 2.21274 0.73144 16 u - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 17 2.05002 1.91160 0.50412 2.12536 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 18 0.47996 2.44283 1.59767 2.38698 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 19 2.40341 2.94060 0.22197 2.88566 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 20 2.39993 1.07941 2.12152 0.79933 20 u - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 21 1.38905 1.40885 1.52177 1.24501 21 u - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 22 1.42916 1.36921 1.26317 1.49868 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 23 0.66889 2.42214 1.21534 2.27904 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 24 1.61809 1.01005 1.65108 1.40373 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 25 2.34617 2.35604 2.85096 0.28544 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 26 1.58987 0.66081 2.41286 1.66044 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 27 2.34617 2.35604 2.85096 0.28544 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 28 0.88147 1.98805 1.72164 1.30900 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 29 2.04979 0.57958 2.61179 1.43675 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.31070 1.40955 3.78057 0.17732 1.81713 1.09861 0.40547 30 1.63374 1.81931 0.95935 1.34892 31 g - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 31 2.51025 1.62029 2.23818 0.48734 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.11669 3.78057 2.43807 1.46634 0.26236 1.09861 0.40547 32 1.72401 1.42226 1.47387 1.04570 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.05000 3.71387 3.71387 1.46634 0.26236 0.42028 1.06962 33 1.42874 1.68537 1.32442 1.17423 34 u - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 34 0.91734 2.28437 0.95761 2.16481 35 a - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 35 3.09180 0.26123 2.76791 2.10635 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 36 2.60917 1.85914 2.25525 0.40684 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 37 2.35858 0.56819 1.77092 1.77953 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 38 2.50120 0.28668 3.06902 2.11367 39 C - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 39 0.21211 2.95343 2.70603 2.62888 40 A - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 40 0.21211 2.95343 2.70603 2.62888 41 A - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 41 2.40042 3.23314 0.21129 2.80762 42 G - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 42 0.21211 2.95343 2.70603 2.62888 43 A - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 43 2.50120 0.28668 3.06902 2.11367 44 C - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 44 0.21211 2.95343 2.70603 2.62888 45 A - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 45 2.67864 1.68762 2.38737 0.42386 46 U - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 46 0.47923 2.44466 1.59779 2.38988 47 A - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 47 1.28640 2.49708 0.60562 2.34679 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 48 0.47964 2.44363 1.59772 2.38826 49 A - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 49 2.67171 1.68755 2.38477 0.42498 50 U - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 50 2.44495 1.47826 2.18150 0.55798 51 U - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 51 2.40340 2.94059 0.22197 2.88565 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 52 0.95409 2.27299 0.93119 2.13919 53 g - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 53 1.85237 1.24104 2.37953 0.77337 54 u - - - 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 54 2.66754 1.68751 2.38320 0.42565 55 U - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 55 1.85938 1.03107 1.84535 1.10977 56 c - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 56 1.27029 1.62397 2.10178 0.91655 57 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 57 0.48221 2.43902 1.77465 2.07313 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 58 2.34617 2.35604 2.85096 0.28544 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 59 0.21211 2.95343 2.70603 2.62888 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 60 2.34617 2.35604 2.85096 0.28544 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 61 0.21211 2.95343 2.70603 2.62888 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 62 2.40042 3.23314 0.21129 2.80762 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 63 2.34617 2.35604 2.85096 0.28544 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 64 0.50474 2.26514 2.24974 1.67614 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 65 1.67318 0.92780 1.56106 1.57496 66 c - - _ 1.38629 1.38629 1.38629 1.38629 0.22151 1.73793 3.78057 0.55874 0.84847 1.09861 0.40547 66 1.68175 2.01047 0.70352 1.68640 70 g - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 67 0.48280 2.56553 1.52428 2.42713 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 68 1.36822 2.02150 1.09825 1.27465 72 g - - - 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 69 2.36497 1.22315 2.08246 0.71924 73 u - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 70 3.09869 0.26038 2.77071 2.10769 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 71 0.72748 2.34482 1.16495 2.21573 75 a - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 72 0.48374 2.56260 1.52427 2.42316 76 A - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 73 2.61674 1.85965 2.25768 0.40551 77 U - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 74 2.56060 1.56271 2.29898 0.48970 78 U - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 75 2.61339 1.85942 2.25661 0.40610 79 U - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 76 0.48496 2.55881 1.52425 2.41803 80 A - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 77 0.21211 2.95343 2.70603 2.62888 81 A - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 78 1.97466 1.69415 2.48500 0.52069 82 U - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 79 0.21211 2.95343 2.70603 2.62888 83 A - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 80 0.44916 2.47207 1.85524 2.11189 84 A - - , 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 81 2.91536 0.32117 2.65066 1.89773 85 C - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 82 2.91529 0.32118 2.65063 1.89772 86 C - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 83 1.85294 1.08868 1.68274 1.13725 87 c - - < 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 84 1.85208 0.99722 2.39216 0.96036 88 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 85 2.34617 2.35604 2.85096 0.28544 89 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 86 1.64595 1.07823 1.88835 1.15312 90 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 87 1.88803 1.42866 2.40696 0.65602 91 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 88 1.04248 2.07489 1.20523 1.50405 92 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 89 2.40042 3.23314 0.21129 2.80762 93 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 90 2.34617 2.35604 2.85096 0.28544 94 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 91 0.47822 2.44273 1.78408 2.07751 95 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 92 1.57075 2.63618 0.49081 2.22244 96 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 93 2.34617 2.35604 2.85096 0.28544 97 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 94 1.64573 1.85359 1.19160 1.05923 98 u - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 95 2.17114 2.81538 0.27877 2.66854 99 G - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 96 2.16983 2.81381 0.27927 2.66650 100 G - - > 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 97 0.21211 2.95343 2.70603 2.62888 101 A - - : 1.38629 1.38629 1.38629 1.38629 0.04669 3.78057 3.78057 1.46634 0.26236 1.09861 0.40547 98 0.21211 2.95343 2.70603 2.62888 102 A - - : 1.38629 1.38629 1.38629 1.38629 0.02362 3.75749 * 1.46634 0.26236 0.00000 * //