INFERNAL1/a [1.1.4 | Dec 2020] NAME hsp17 ACC RF02358 DESC Hsp17 thermometer STATES 151 NODES 39 CLEN 49 W 64 ALPH RNA RF no CONS yes MAP yes DATE Fri Feb 28 01:35:08 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 3.000000 CKSUM 158079521 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 52.80 NC 32.10 EFP7GF -4.9392 0.73589 ECMLC 0.57634 -7.56997 2.96079 1600000 518843 0.002313 ECMGC 0.45057 -11.21712 1.88277 1600000 146361 0.002733 ECMLI 0.55474 -5.78446 4.17795 1600000 301526 0.003980 ECMGI 0.46847 -8.60054 3.41225 1600000 111208 0.003597 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 64 83 -7.331 -7.538 -0.041 -5.952 IL 1 1 2 1 4 1 9 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 8 64 83 -8.323 -0.016 -6.977 1.837 -3.097 -2.659 -2.714 D 4 2 3 5 3 0 5 62 82 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 8 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 7 63 82 -8.323 -0.414 -2.021 -2.168 -2.049 -2.929 1.767 D 7 5 3 8 3 0 4 61 81 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 8 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 8 62 81 -7.930 -0.021 -6.584 -1.658 1.601 -2.479 -1.089 D 10 8 3 11 3 0 4 61 80 -8.111 -0.287 -2.502 IL 11 11 3 11 3 1 6 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 7 61 80 -8.323 -0.016 -6.977 -1.069 0.863 -1.904 0.523 D 13 11 3 14 3 0 1 59 79 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 5 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 6 60 79 -8.323 -0.016 -6.977 -2.619 1.795 -3.443 -1.863 D 16 14 3 17 3 0 1 58 78 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 5 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 1 6 58 78 -8.323 -0.016 -6.977 0.493 -1.821 0.917 -1.247 D 19 17 3 20 3 0 0 57 77 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 5 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 1 5 57 77 -8.323 -0.016 -6.977 0.407 0.685 -1.460 -0.509 D 22 20 3 23 3 0 0 56 76 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 4 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 5 56 76 -8.323 -0.016 -6.977 -2.322 -3.642 1.847 -3.026 D 25 23 3 26 3 0 0 55 74 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 3 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 4 55 74 -8.693 -0.015 -7.010 -2.322 -3.642 1.847 -3.026 D 28 26 3 29 3 0 0 54 73 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 49 - G - - MR 30 29 3 32 5 1 4 54 73 -7.411 -0.031 -7.227 -7.439 -8.330 -2.322 -3.642 1.847 -3.026 D 31 29 3 32 5 0 0 53 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 48 G U - - MP 33 32 3 37 6 2 5 53 72 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 -4.078 -2.747 -4.270 0.807 -5.343 -6.135 -0.882 -4.249 -3.844 0.733 -4.399 3.439 -1.218 -5.190 -2.817 -2.899 ML 34 32 3 37 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 47 c a - - MP 39 38 6 43 6 2 4 51 70 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 -4.059 -4.137 -3.867 -0.551 2.401 -4.347 1.511 -3.492 -3.913 -0.440 -4.254 -2.328 2.289 -4.180 -0.469 -2.824 ML 40 38 6 43 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 46 A U - - MP 45 44 6 49 6 2 4 49 68 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 -4.476 -3.353 -4.422 3.642 -5.136 -6.285 -0.788 -4.416 -4.312 0.335 -4.892 -0.734 -1.200 -5.339 -2.725 -3.234 ML 46 44 6 49 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 45 a g - - MP 51 50 6 55 6 2 4 47 66 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 -3.308 -2.695 2.309 2.270 -3.576 -4.584 0.352 -3.572 -3.342 0.928 -3.900 -0.358 -0.001 -3.814 -1.442 -2.379 ML 52 50 6 55 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 44 u a - - MP 57 56 6 61 4 2 2 45 64 -7.331 -7.538 -0.041 -5.952 -3.218 -3.200 -3.235 0.172 -2.615 -3.921 1.441 -3.190 -3.284 0.430 -3.740 -1.404 2.141 2.087 -0.451 -2.295 ML 58 56 6 61 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 45 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 44 64 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 1 47 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - C - - - ML 63 62 6 65 3 1 1 43 62 -8.693 -0.015 -7.010 -2.619 1.795 -3.443 -1.863 D 64 62 6 65 3 0 0 42 61 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 43 - g - - MR 66 65 3 68 3 1 1 42 61 -8.693 -0.015 -7.010 -0.614 -0.053 0.821 -0.699 D 67 65 3 68 3 0 0 40 59 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 42 - A - - MR 69 68 3 71 3 1 1 41 60 -8.693 -0.015 -7.010 1.837 -3.097 -2.659 -2.714 D 70 68 3 71 3 0 0 39 58 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 41 - A - - MR 72 71 3 74 5 1 1 40 59 -7.411 -0.031 -7.227 -7.439 -8.330 1.837 -3.097 -2.659 -2.714 D 73 71 3 74 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 40 u u - - MP 75 74 3 79 6 2 2 39 58 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 -3.450 -2.738 -3.569 2.303 -3.766 -4.814 0.261 -3.683 -3.447 0.887 -4.011 -0.333 -0.096 -4.013 -1.576 2.385 ML 76 74 3 79 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 39 a a - - MP 81 80 6 85 6 2 2 37 56 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 2.314 -2.616 -3.360 2.290 -3.595 -4.557 0.240 -3.533 -3.261 0.919 -3.833 -0.288 -0.044 -3.753 -1.507 -2.320 ML 82 80 6 85 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 38 a g - - MP 87 86 6 91 4 2 2 35 54 -7.220 -8.465 -0.472 -1.891 -3.510 -3.538 2.309 -0.177 -2.675 -4.077 1.398 -3.315 -3.512 -0.066 -3.927 -1.777 0.686 -3.727 1.916 -2.515 ML 88 86 6 91 4 1 1 34 53 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 34 53 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 32 51 -12.737 -14.007 -2.036 -0.404 IL 91 91 5 91 4 1 1 34 53 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 37 - G - - MR 93 92 6 95 5 1 1 33 52 -7.064 -0.040 -6.879 -7.091 -7.983 -1.507 -2.716 1.706 -2.102 D 94 92 6 95 5 0 0 32 51 -6.575 -0.262 -4.202 -5.633 -3.627 IR 95 95 3 95 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 36 u a - - MP 96 95 3 100 6 2 2 32 51 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 2.049 -2.981 -3.087 0.360 -2.605 -3.853 1.372 -3.109 -3.115 0.474 -3.607 -1.145 2.110 -3.309 -0.483 -2.160 ML 97 95 3 100 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 35 c g - - MP 102 101 6 106 6 2 2 30 49 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 -3.774 -3.761 2.335 -0.281 -2.743 -4.235 2.543 -3.424 -3.713 -0.111 -4.097 -1.909 0.688 -3.954 -0.514 -2.668 ML 103 101 6 106 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 34 C G - - MP 108 107 6 112 6 2 2 28 47 -9.266 -9.205 -0.019 -7.982 -8.261 -8.656 -5.348 -5.320 -4.896 -1.500 -3.462 -5.201 3.738 -4.352 -4.984 -1.348 -5.146 -3.290 -0.044 -5.361 -1.200 -3.801 ML 109 107 6 112 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 33 U A - - MP 114 113 6 118 4 2 2 26 45 -7.331 -7.538 -0.360 -2.256 -5.110 -4.948 -4.841 -1.191 -3.607 -5.317 0.730 -4.359 -4.839 -1.044 -5.166 -2.820 3.636 -5.217 -1.262 -3.547 ML 115 113 6 118 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - u - - - ML 120 119 6 122 3 1 1 23 42 -8.032 -0.020 -6.686 0.460 -0.868 -1.105 0.688 D 121 119 6 122 3 0 0 21 40 -7.836 -3.349 -0.156 IL 122 122 3 122 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - a - - - ML 123 122 3 125 3 1 1 22 41 -8.032 -0.020 -6.686 0.535 0.400 -1.180 -0.340 D 124 122 3 125 3 0 0 20 39 -7.836 -3.349 -0.156 IL 125 125 3 125 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - a - - - ML 126 125 3 128 3 1 1 21 40 -8.032 -0.020 -6.686 0.535 0.400 -1.180 -0.340 D 127 125 3 128 3 0 0 19 38 -7.836 -3.349 -0.156 IL 128 128 3 128 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 129 128 3 131 3 1 1 20 38 -8.032 -0.020 -6.686 1.747 -2.510 -2.128 -2.066 D 130 128 3 131 3 0 0 18 37 -7.836 -3.349 -0.156 IL 131 131 3 131 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - C - - - ML 132 131 3 134 3 1 1 19 37 -8.032 -0.020 -6.686 -1.908 1.666 -2.736 -1.288 D 133 131 3 134 3 0 0 17 36 -7.836 -3.349 -0.156 IL 134 134 3 134 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - a - - - ML 135 134 3 137 3 1 1 17 36 -8.032 -0.020 -6.686 0.817 -1.445 0.401 -0.864 D 136 134 3 137 3 0 0 16 35 -7.836 -0.355 -2.227 IL 137 137 3 137 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - a - - - ML 138 137 3 140 3 1 1 16 34 -8.323 -0.016 -6.977 0.951 0.047 -1.359 -0.634 D 139 137 3 140 3 0 0 16 34 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - u - - - ML 141 140 3 143 3 1 1 15 33 -8.323 -0.016 -6.977 0.331 -1.034 -1.315 0.888 D 142 140 3 143 3 0 0 15 33 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - a - - - ML 144 143 3 146 3 1 1 13 31 -8.323 -0.016 -6.977 0.870 -1.098 -1.253 0.363 D 145 143 3 146 3 0 0 13 32 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - C - - - ML 147 146 3 149 2 1 1 1 1 * 0.000 -2.619 1.795 -3.443 -1.863 D 148 146 3 149 2 0 0 0 0 * 0.000 IL 149 149 3 149 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 150 149 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME hsp17 ACC RF02358 DESC Hsp17 thermometer LENG 49 MAXL 127 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Feb 28 01:35:08 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 3.000000 CKSUM 158079521 STATS LOCAL MSV -8.0049 0.73589 STATS LOCAL VITERBI -9.0520 0.73589 STATS LOCAL FORWARD -2.4698 0.73589 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.20883 1.48886 1.42257 1.44932 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.11304 3.53320 3.22945 3.26771 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.88921 2.80654 3.41638 0.16118 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.30313 3.95124 1.41771 1.46634 0.26236 1.09861 0.40547 3 2.53564 0.27652 3.10475 2.14102 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.05077 3.69888 3.69888 1.46634 0.26236 0.14735 1.98773 4 2.12731 0.78795 2.70638 1.02363 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.20130 0.14206 3.77312 2.67740 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 1.04448 2.64841 0.75065 2.25093 6 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 1.10398 0.91173 2.39800 1.73883 7 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.99604 3.91100 0.10615 3.48342 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.99604 3.91100 0.10615 3.48342 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.06031 3.19370 0.24372 3.03952 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86993 0.66578 2.69810 1.01586 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.23893 3.14432 2.09933 3.05980 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.47108 2.36676 1.72369 2.26838 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.37729 1.65629 2.12104 0.51677 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.20130 0.14206 3.77312 2.67740 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 1.11230 2.43551 1.74144 0.89557 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.46207 2.43045 1.71105 2.28919 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.97975 1.68968 2.42170 1.04627 18 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 1.04008 1.69379 2.04460 1.09866 19 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.98035 0.96902 2.46239 1.83173 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.45989 0.18025 3.29003 2.34075 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.29583 2.16804 3.09441 0.21908 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.23460 3.95124 1.66137 1.46634 0.26236 1.09861 0.40547 23 1.06733 1.98809 2.15217 0.90910 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04749 3.76413 3.76413 1.46634 0.26236 2.47433 0.08798 24 1.01548 1.10888 2.20427 1.62197 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04749 3.76413 3.76413 1.46634 0.26236 2.47433 0.08798 25 1.01548 1.10888 2.20427 1.62197 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04749 3.76413 3.76413 1.46634 0.26236 2.47433 0.08798 26 0.17534 3.12580 2.86110 2.81810 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04749 3.76413 3.76413 1.46634 0.26236 2.47433 0.08798 27 2.70873 0.23136 3.28278 2.27889 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04749 3.76413 3.76413 1.46634 0.26236 2.47433 0.08798 28 0.81968 2.38797 1.10801 1.98489 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04749 3.76413 3.76413 1.46634 0.26236 0.18445 1.78118 29 0.72743 1.35341 2.32847 1.82604 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 1.15656 2.10280 2.29746 0.77045 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.78355 2.14734 2.25484 1.13466 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.20130 0.14206 3.77312 2.67740 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.24744 3.28664 2.00514 3.05377 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.62059 3.46663 0.15398 3.25111 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.10555 2.64095 0.32711 2.45432 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.61018 2.24068 1.51870 2.02977 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.30313 3.95124 1.41771 1.46634 0.26236 1.09861 0.40547 37 2.43107 3.26876 0.20361 2.84343 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.05077 3.69888 3.69888 1.46634 0.26236 0.14735 1.98773 38 2.09517 2.59654 0.34224 2.38335 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.96042 1.99405 2.23334 0.98362 39 a - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.57290 2.02867 2.24621 0.37633 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.11304 3.53320 3.22945 3.26771 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.11304 3.53320 3.22945 3.26771 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 1.81160 1.42308 0.81733 1.87063 43 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 1.20654 1.02411 1.48445 2.16258 44 c - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.49693 1.99433 0.87977 1.00327 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 3.28655 2.42854 2.95449 0.19559 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 0.44478 2.86107 1.46629 2.64442 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 3.25722 2.15112 2.99189 0.22947 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.99604 3.91100 0.10615 3.48342 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //