INFERNAL1/a [1.1.5 | Sep 2023] NAME GlsR17_miR2 ACC RF02339 DESC Giardia snoRNA GlsR17 STATES 193 NODES 44 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 19:54:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02339/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.425781 CKSUM 1861123157 NULL 0.000 0.000 0.000 0.000 GA 84.00 TC 84.80 NC 42.00 EFP7GF -9.1734 0.71936 ECMLC 0.69657 -4.81361 3.33985 1600000 351351 0.003415 ECMGC 0.41054 -16.71593 -2.92239 1600000 115185 0.003473 ECMLI 0.69960 -2.88524 4.75076 1600000 250749 0.004786 ECMGI 0.46341 -11.11817 0.28061 1600000 78729 0.005081 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 100 -6.725 -6.932 -0.062 -5.346 IL 1 1 2 1 4 1 19 83 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 5 1 19 80 100 -6.916 -0.181 -3.366 -6.943 -7.835 1.613 -1.962 -1.635 -1.467 D 4 2 3 5 5 0 13 78 98 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 17 80 100 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 63 G C - - MP 6 5 3 10 6 2 19 79 99 -8.970 -8.909 -0.023 -7.686 -7.965 -8.360 -4.047 -2.769 -4.108 0.641 -4.255 -4.401 0.218 -4.281 -3.837 3.414 -4.229 -0.454 -0.192 -4.003 -1.788 -2.995 ML 7 5 3 10 6 1 15 77 97 -6.820 -7.167 -0.742 -1.575 -7.016 -4.546 -0.049 -0.951 0.808 -0.386 MR 8 5 3 10 6 1 13 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 9 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 16 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 16 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 62 G C - - MP 12 11 6 16 6 2 17 77 97 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 13 11 6 16 6 1 13 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 12 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 9 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 15 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 15 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 61 A U - - MP 18 17 6 22 6 2 15 75 95 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -3.474 -2.592 -3.512 3.075 -3.696 -4.735 0.586 -3.572 -3.420 1.424 -3.952 -0.125 0.166 -3.974 -1.358 -2.368 ML 19 17 6 22 6 1 12 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 11 73 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 8 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 14 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 13 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 60 C G - - MP 24 23 6 28 4 2 13 73 93 -6.725 -6.932 -0.062 -5.346 -4.144 -4.010 -3.899 -0.284 -2.714 -4.363 3.402 -3.482 -3.938 0.025 -4.240 -1.953 0.837 -4.238 -0.414 -2.793 ML 25 23 6 28 4 1 11 73 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 9 72 93 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 8 71 91 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 13 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 30 29 6 32 3 1 12 70 90 -7.759 -0.024 -6.413 1.613 -1.962 -1.635 -1.467 D 31 29 6 32 3 0 7 69 89 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 11 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 33 32 3 35 3 1 11 69 89 -7.759 -0.024 -6.413 -1.256 1.462 -2.059 -0.771 D 34 32 3 35 3 0 6 68 88 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 11 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 36 35 3 38 3 1 10 68 88 -8.164 -0.021 -6.481 1.613 -1.962 -1.635 -1.467 D 37 35 3 38 3 0 5 67 87 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 9 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 59 - A - - MR 39 38 3 41 3 1 9 67 87 -8.164 -0.021 -6.481 1.613 -1.962 -1.635 -1.467 D 40 38 3 41 3 0 4 65 85 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 58 - u - - MR 42 41 3 44 3 1 9 66 86 -8.164 -0.021 -6.481 -0.600 -0.081 -1.337 0.999 D 43 41 3 44 3 0 3 65 84 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 8 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 57 - A - - MR 45 44 3 47 5 1 8 65 85 -6.916 -0.044 -6.731 -6.943 -7.835 1.613 -1.962 -1.635 -1.467 D 46 44 3 47 5 0 2 64 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 56 g u - - MP 48 47 3 52 6 2 8 64 84 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -2.463 -1.614 -2.767 1.193 -2.873 -3.264 0.998 -2.892 -2.507 1.708 0.044 1.843 0.674 -2.828 -0.770 -1.722 ML 49 47 3 52 6 1 4 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 3 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 5 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 5 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 55 G C - - MP 54 53 6 58 4 2 6 62 82 -6.725 -6.932 -0.062 -5.346 -3.439 -0.101 -3.498 0.956 -3.870 -4.075 0.367 -3.850 -3.479 3.133 -3.898 -0.223 0.086 -3.475 -1.521 -2.489 ML 55 53 6 58 4 1 3 62 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 61 81 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 4 64 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 4 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - C - - - ML 60 59 6 62 5 1 5 60 79 -6.916 -0.044 -6.731 -6.943 -7.835 -1.256 1.462 -2.059 -0.771 D 61 59 6 62 5 0 0 58 78 -4.959 -0.803 -4.221 -2.596 -2.508 IL 62 62 3 62 5 1 3 60 80 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 54 G C - - MP 63 62 3 67 6 2 5 59 78 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 64 62 3 67 6 1 2 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 2 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 53 G C - - MP 69 68 6 73 4 2 3 57 76 -6.725 -6.932 -0.062 -5.346 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 70 68 6 73 4 1 1 57 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 57 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 2 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - A - - - ML 75 74 6 77 5 1 2 54 74 -6.916 -0.044 -6.731 -6.943 -7.835 1.613 -1.962 -1.635 -1.467 D 76 74 6 77 5 0 0 53 72 -4.959 -0.803 -4.221 -2.596 -2.508 IL 77 77 3 77 5 1 1 55 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 52 G C - - MP 78 77 3 82 6 2 4 53 73 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 79 77 3 82 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 51 C G - - MP 84 83 6 88 6 2 3 51 71 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -4.144 -4.010 -3.899 -0.284 -2.714 -4.363 3.402 -3.482 -3.938 0.025 -4.240 -1.953 0.837 -4.238 -0.414 -2.793 ML 85 83 6 88 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 50 G C - - MP 90 89 6 94 6 2 3 49 69 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 91 89 6 94 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 49 G C - - MP 96 95 6 100 4 2 2 47 67 -6.725 -6.932 -0.062 -5.346 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 97 95 6 100 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - A - - - ML 102 101 6 104 3 1 1 45 64 -7.759 -0.024 -6.413 1.613 -1.962 -1.635 -1.467 D 103 101 6 104 3 0 0 43 63 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - - - ML 105 104 3 107 3 1 1 44 63 -8.164 -0.021 -6.481 1.613 -1.962 -1.635 -1.467 D 106 104 3 107 3 0 0 42 62 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 44 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 48 - A - - MR 108 107 3 110 5 1 1 43 62 -6.916 -0.044 -6.731 -6.943 -7.835 1.613 -1.962 -1.635 -1.467 D 109 107 3 110 5 0 0 41 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 47 G C - - MP 111 110 3 115 6 2 2 42 61 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 112 110 3 115 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 46 g u - - MP 117 116 6 121 4 2 2 40 59 -6.725 -6.932 -0.062 -5.346 -3.366 -2.241 -3.509 1.274 -4.018 -4.757 0.324 -3.570 -3.246 1.694 -3.756 2.758 -0.038 -4.009 -1.615 -2.268 ML 118 116 6 121 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 42 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - C - - - ML 123 122 6 125 3 1 1 37 56 -7.759 -0.024 -6.413 -1.256 1.462 -2.059 -0.771 D 124 122 6 125 3 0 0 36 55 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - A - - - ML 126 125 3 128 3 1 1 36 55 -7.759 -0.024 -6.413 1.613 -1.962 -1.635 -1.467 D 127 125 3 128 3 0 0 35 54 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - c - - - ML 129 128 3 131 3 1 1 35 53 -8.164 -0.021 -6.481 0.057 0.723 -1.166 -0.211 D 130 128 3 131 3 0 0 33 52 -5.620 -0.734 -1.403 IL 131 131 3 131 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 45 - A - - MR 132 131 3 134 3 1 1 34 52 -8.164 -0.021 -6.481 1.613 -1.962 -1.635 -1.467 D 133 131 3 134 3 0 0 32 51 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 44 - A - - MR 135 134 3 137 3 1 1 33 51 -8.164 -0.021 -6.481 1.613 -1.962 -1.635 -1.467 D 136 134 3 137 3 0 0 31 50 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 43 - U - - MR 138 137 3 140 5 1 1 32 50 -6.916 -0.044 -6.731 -6.943 -7.835 -1.117 -1.180 -1.828 1.494 D 139 137 3 140 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 42 G C - - MP 141 140 3 145 6 2 2 31 49 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -3.261 -2.525 -3.344 0.768 -3.443 -0.732 0.605 -3.677 -3.343 3.136 -3.758 -0.470 0.290 -3.267 -1.230 -2.426 ML 142 140 3 145 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 41 G C - - MP 147 146 6 151 6 2 2 29 47 -9.027 -8.966 -0.083 -7.742 -4.494 -8.417 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 148 146 6 151 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 40 c g - - MP 153 152 6 157 6 2 2 27 45 -8.967 -8.906 -0.023 -7.683 -7.962 -8.357 -3.370 -3.241 -3.263 0.429 -2.293 -3.843 2.678 -2.976 -3.290 0.796 -3.680 -1.227 1.956 -3.506 0.018 -2.173 ML 154 152 6 157 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 25 44 -7.517 -6.245 -0.912 -6.224 -1.358 -4.437 -0.067 -0.974 0.833 -0.405 D 156 152 6 157 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 39 U A - - MP 159 158 6 163 6 2 2 25 43 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -3.787 -3.595 -3.668 0.078 -2.702 -4.268 1.616 -3.367 -3.678 0.403 -4.070 -1.505 3.092 -3.952 -0.388 -2.538 ML 160 158 6 163 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 38 G C - - MP 165 164 6 169 6 2 2 23 41 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 166 164 6 169 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 31 37 c g - - MP 171 170 6 175 6 2 2 21 39 -9.027 -8.966 -0.022 -7.742 -8.022 -8.417 -3.520 -3.464 -3.391 0.204 -2.352 -3.941 2.878 -3.064 -3.417 0.472 -3.794 -1.503 1.271 -3.654 1.165 -2.305 ML 172 170 6 175 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 32 36 G C - - MP 177 176 6 181 4 2 2 19 37 -6.725 -6.932 -0.062 -5.346 -4.344 -2.907 -4.415 0.457 -4.673 -4.532 -0.133 -4.623 -4.056 3.526 -4.424 -0.595 -0.531 -4.204 -2.151 -3.299 ML 178 176 6 181 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - c - - - ML 183 182 6 185 3 1 1 15 33 -7.759 -0.024 -6.413 -0.633 0.807 -1.412 0.299 D 184 182 6 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - c - - - ML 186 185 3 188 3 1 1 13 32 -7.759 -0.024 -6.413 -0.337 0.630 -0.350 -0.192 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.613 -1.962 -1.635 -1.467 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME GlsR17_miR2 ACC RF02339 DESC Giardia snoRNA GlsR17 LENG 63 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 19:54:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02339/CM NSEQ 4 EFFN 2.183594 CKSUM 1861123157 STATS LOCAL MSV -8.4508 0.71936 STATS LOCAL VITERBI -8.8488 0.71936 STATS LOCAL FORWARD -3.0644 0.71936 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33875 1.20284 1.27452 1.84566 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 0.00000 * 1 0.16858 3.16173 2.89346 2.85765 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 2 2.24293 2.78366 0.27242 2.65203 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 3 2.44884 3.06165 0.20426 2.96525 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 4 0.38331 2.65281 1.76106 2.57598 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 5 3.07083 0.26602 2.86057 2.04057 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 6 0.16858 3.16173 2.89346 2.85765 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 7 2.75225 0.22136 3.32713 2.31369 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 8 0.16858 3.16173 2.89346 2.85765 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 9 1.79120 2.20203 0.50331 2.13592 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 10 1.66078 2.67577 0.41188 2.54145 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 11 2.75225 0.22136 3.32713 2.31369 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 12 2.53653 3.16132 0.18206 3.10242 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 13 2.53632 3.16108 0.18211 3.10209 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 14 0.16858 3.16173 2.89346 2.85765 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 15 2.53616 3.16090 0.18215 3.10184 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 16 3.11837 0.26019 2.88286 2.04881 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 17 2.53570 3.16037 0.18226 3.10108 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 18 2.53527 3.15988 0.18237 3.10040 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 19 0.16858 3.16173 2.89346 2.85765 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 20 0.16858 3.16173 2.89346 2.85765 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 21 2.53453 3.15904 0.18254 3.09922 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 22 1.88512 2.81974 0.32693 2.69658 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 23 2.75225 0.22136 3.32713 2.31369 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 24 0.16858 3.16173 2.89346 2.85765 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 25 1.39771 0.75177 2.38511 1.66480 25 c - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 26 2.23237 2.06669 0.38499 2.45729 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 27 2.53552 3.16017 0.18230 3.10080 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.19500 3.88687 1.85372 1.46634 0.26236 1.09861 0.40547 28 2.38815 0.79786 2.10438 1.09068 28 c - - < 1.38629 1.38629 1.38629 1.38629 0.04865 3.74052 3.74052 1.46634 0.26236 0.23258 1.57257 29 2.88028 1.83973 2.62296 0.33907 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 30 2.53285 3.15711 0.18295 3.09652 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 31 2.62008 0.64176 2.38834 1.17423 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 32 2.53269 3.15694 0.18298 3.09627 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 33 2.02511 0.70436 2.59190 1.20826 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 34 1.77854 0.81156 1.63357 1.65173 34 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 35 0.16858 3.16173 2.89346 2.85765 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 36 3.27903 0.21800 2.98132 2.23040 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 37 1.88376 2.54383 0.39073 2.37674 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 38 3.23434 0.22261 2.96148 2.22149 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 39 0.39327 2.77134 1.67392 2.58938 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 40 1.27632 2.27358 0.69255 2.13966 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 41 3.31721 0.21424 2.99788 2.23776 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 42 2.69679 0.35519 2.37794 1.97475 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 43 2.53754 2.51390 3.05187 0.23229 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 44 0.16858 3.16173 2.89346 2.85765 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 45 0.16858 3.16173 2.89346 2.85765 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 46 2.91533 1.84342 2.62255 0.33558 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 47 3.32295 0.21368 3.00034 2.23885 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 48 0.16858 3.16173 2.89346 2.85765 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 49 3.30249 0.21567 2.99154 2.23495 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 50 3.30053 0.21586 2.99070 2.23458 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 51 2.32188 3.04525 0.22612 2.86995 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 52 3.28581 0.21732 2.98429 2.23172 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 53 3.29761 0.21615 2.98943 2.23401 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 54 3.28870 0.21703 2.98555 2.23229 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 55 2.77772 0.36820 2.49225 1.81329 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 56 2.35058 1.63245 1.48329 0.72909 56 u - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 57 0.16858 3.16173 2.89346 2.85765 57 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 58 1.98237 1.43338 2.50795 0.61190 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 59 0.16858 3.16173 2.89346 2.85765 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 60 2.32337 3.04722 0.22565 2.87235 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 61 2.83867 2.04991 2.49024 0.31490 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04188 3.88687 3.88687 1.46634 0.26236 1.09861 0.40547 62 3.30180 0.21574 2.99124 2.23482 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.18702 3.88687 1.89669 1.46634 0.26236 1.09861 0.40547 63 3.03010 0.27735 2.69788 2.06712 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.02443 3.72427 * 1.46634 0.26236 0.00000 * //