INFERNAL1/a [1.1.5 | Sep 2023] NAME TtnuCD18 ACC RF02294 DESC Tetrahymena snoRNA TtnuCD18 STATES 178 NODES 60 CLEN 58 W 141 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 13:00:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02294/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 3166867770 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 70.80 NC 39.90 EFP7GF -4.5910 0.73155 ECMLC 0.49625 -11.53569 1.11927 1600000 640581 0.001873 ECMGC 0.44123 -9.46488 3.00082 1600000 97896 0.004086 ECMLI 0.45921 -6.69051 5.09665 1600000 269090 0.004459 ECMGI 0.52026 -1.96404 7.74303 1600000 62422 0.006408 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 141 225 -6.977 -7.184 -0.052 -5.598 IL 1 1 2 1 4 1 18 143 227 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 143 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 18 141 225 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 4 2 3 5 3 0 13 138 222 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 19 147 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 17 140 224 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 7 5 3 8 3 0 13 136 220 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 18 146 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 16 138 222 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 10 8 3 11 3 0 12 135 219 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 18 145 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 15 137 221 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 13 11 3 14 3 0 12 134 217 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 17 143 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 14 136 219 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 16 14 3 17 3 0 11 132 216 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 16 142 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 14 134 218 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 19 17 3 20 3 0 10 131 214 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 15 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 13 133 216 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 22 20 3 23 3 0 10 130 213 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 14 139 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 12 132 215 -5.392 -0.070 -5.392 -0.655 -0.818 0.505 0.464 D 25 23 3 26 3 0 9 129 212 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 13 138 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 11 130 213 -5.392 -0.485 -1.933 -0.913 0.540 -1.072 0.622 D 28 26 3 29 3 0 9 128 211 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 13 137 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 11 129 212 -5.000 -0.093 -5.000 1.190 -1.008 -0.686 -0.738 D 31 29 3 32 3 0 9 127 210 -13.666 -0.241 -2.701 IL 32 32 3 32 3 1 13 135 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 10 128 210 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 34 32 3 35 3 0 6 124 207 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 12 134 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 10 126 209 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 37 35 3 38 3 0 5 123 205 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 11 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 9 125 207 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 40 38 3 41 3 0 5 121 204 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 11 131 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 9 123 206 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 43 41 3 44 3 0 4 120 202 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 10 130 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 8 122 204 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 46 44 3 47 3 0 4 119 200 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 7 121 202 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 49 47 3 50 3 0 3 117 199 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 9 127 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 7 119 201 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 52 50 3 53 3 0 3 116 197 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 8 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 6 118 199 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 55 53 3 56 3 0 2 114 196 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 8 124 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 6 116 198 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 58 56 3 59 3 0 2 113 194 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 7 123 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 5 115 196 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 61 59 3 62 3 0 1 112 192 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 5 113 194 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 64 62 3 65 3 0 1 110 191 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 6 120 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 4 112 193 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 67 65 3 68 3 0 0 109 189 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 6 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 4 111 191 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 70 68 3 71 3 0 0 107 187 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 5 117 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 4 109 189 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 73 71 3 74 3 0 0 106 186 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 5 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 3 108 188 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 76 74 3 77 3 0 0 104 184 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 5 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 78 77 3 80 3 1 3 106 186 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 79 77 3 80 3 0 0 103 182 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 4 113 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 2 105 184 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 82 80 3 83 3 0 0 101 181 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 4 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 2 103 183 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 85 83 3 86 3 0 0 100 179 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 87 86 3 89 3 1 2 102 181 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 88 86 3 89 3 0 0 98 177 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 3 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 90 89 3 92 3 1 2 100 179 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 91 89 3 92 3 0 0 97 175 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 107 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 93 92 3 95 3 1 1 99 178 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 94 92 3 95 3 0 0 95 174 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - u - - - ML 96 95 3 98 3 1 1 97 176 -5.392 -0.070 -5.392 0.423 -0.727 -0.724 0.536 D 97 95 3 98 3 0 0 94 172 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 2 104 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 99 98 3 101 3 1 1 96 174 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 100 98 3 101 3 0 0 92 170 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - C - - - ML 102 101 3 104 3 1 1 94 172 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 103 101 3 104 3 0 0 91 168 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 101 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 105 104 3 107 3 1 1 93 170 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 106 104 3 107 3 0 0 89 166 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 100 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 108 107 3 110 3 1 1 91 169 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 109 107 3 110 3 0 0 88 165 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 98 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 1 90 167 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 112 110 3 113 3 0 0 86 163 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 1 88 165 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 115 113 3 116 3 0 0 84 161 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 1 86 163 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 118 116 3 119 3 0 0 83 159 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 120 119 3 122 3 1 1 85 161 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 121 119 3 122 3 0 0 82 158 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 92 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - - - ML 123 122 3 125 3 1 1 83 159 -5.392 -0.485 -1.933 1.584 -1.763 -1.496 -1.505 D 124 122 3 125 3 0 0 81 156 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - C - - - ML 126 125 3 128 3 1 1 82 158 -5.000 -0.093 -5.000 -0.861 1.123 -0.952 -0.406 D 127 125 3 128 3 0 0 80 155 -13.666 -0.241 -2.701 IL 128 128 3 128 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - u - - - ML 129 128 3 131 3 1 1 80 156 -5.392 -0.070 -5.392 0.423 -0.727 -0.724 0.536 D 130 128 3 131 3 0 0 76 151 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 132 131 3 134 3 1 1 78 154 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 133 131 3 134 3 0 0 74 149 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 135 134 3 137 3 1 1 77 151 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 136 134 3 137 3 0 0 73 147 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - C - - - ML 138 137 3 140 3 1 1 75 149 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 139 137 3 140 3 0 0 71 145 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - A - - - ML 141 140 3 143 3 1 1 73 147 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 142 140 3 143 3 0 0 69 143 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - C - - - ML 144 143 3 146 3 1 1 71 145 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 145 143 3 146 3 0 0 67 140 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 147 146 3 149 3 1 1 69 143 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 148 146 3 149 3 0 0 65 138 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - u - - - ML 150 149 3 152 3 1 1 67 141 -5.392 -0.070 -5.392 0.423 -0.727 -0.724 0.536 D 151 149 3 152 3 0 0 63 135 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 65 138 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 154 152 3 155 3 0 0 61 133 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 74 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - u - - - ML 156 155 3 158 3 1 1 63 136 -5.392 -0.070 -5.392 0.423 -0.727 -0.724 0.536 D 157 155 3 158 3 0 0 59 130 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - C - - - ML 159 158 3 161 3 1 1 61 133 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 160 158 3 161 3 0 0 56 127 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - U - - - ML 162 161 3 164 3 1 1 59 130 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 163 161 3 164 3 0 0 53 124 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 69 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - G - - - ML 165 164 3 167 3 1 1 56 127 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 166 164 3 167 3 0 0 50 120 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 67 138 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 168 167 3 170 3 1 1 53 123 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 169 167 3 170 3 0 0 45 114 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 64 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - u - - - ML 171 170 3 173 3 1 1 49 118 -5.392 -0.070 -5.392 0.423 -0.727 -0.724 0.536 D 172 170 3 173 3 0 0 32 101 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 1.584 -1.763 -1.496 -1.505 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TtnuCD18 ACC RF02294 DESC Tetrahymena snoRNA TtnuCD18 LENG 58 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Jul 10 13:00:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02294/CM NSEQ 2 EFFN 2.000000 CKSUM 3166867770 STATS LOCAL MSV -8.1296 0.73155 STATS LOCAL VITERBI -9.4213 0.73155 STATS LOCAL FORWARD -3.1333 0.73155 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27502 1.70657 1.50130 1.15123 1.38629 1.38629 1.38629 1.38629 0.02964 4.83577 3.85060 0.39730 1.11515 0.00000 * 1 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 1.84050 1.95342 1.03654 1.06480 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 10 0.56139 2.08489 1.86185 1.89791 - A - - : 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.16705 1.87180 11 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.09289 1.89038 1.88803 1.01509 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 42 1.98342 0.60779 2.04641 1.66785 - C - - : 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.16705 1.87180 43 1.09289 1.89038 1.88803 1.01509 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 1.09289 1.89038 1.88803 1.01509 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.09289 1.89038 1.88803 1.01509 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.09289 1.89038 1.88803 1.01509 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //