INFERNAL1/a [1.1.5 | Sep 2023] NAME TtnuCD11 ACC RF02288 DESC Tetrahymena snoRNA TtnuCD11 STATES 226 NODES 76 CLEN 74 W 158 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 08:05:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02288/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.850586 CKSUM 15560091 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 78.30 NC 35.60 EFP7GF -8.5673 0.71866 ECMLC 0.69313 -8.88321 -0.16391 1600000 505672 0.002373 ECMGC 0.41019 -17.46038 -4.80658 1600000 71823 0.005569 ECMLI 0.61810 -7.80612 1.29959 1600000 333809 0.003595 ECMGI 0.46174 -9.60410 0.99185 1600000 53321 0.007502 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 158 243 -7.283 -7.490 -0.042 -5.904 IL 1 1 2 1 4 2 31 161 246 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 30 160 245 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 30 159 244 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 4 2 3 5 3 0 25 156 240 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 32 165 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 2 29 157 242 -5.658 -0.058 -5.658 0.184 -0.811 0.177 0.218 D 7 5 3 8 3 0 24 154 239 -11.551 -1.585 -0.585 IL 8 8 3 8 3 3 31 164 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 2 28 156 241 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 10 8 3 11 3 0 24 153 237 -11.551 -1.585 -0.585 IL 11 11 3 11 3 3 30 162 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 2 28 155 239 -5.658 -0.058 -5.658 0.176 -0.931 -0.997 0.884 D 13 11 3 14 3 0 23 152 236 -11.551 -1.585 -0.585 IL 14 14 3 14 3 2 29 161 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 27 154 238 -5.658 -0.058 -5.658 0.827 -0.955 -0.969 0.263 D 16 14 3 17 3 0 22 150 235 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 29 160 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 26 152 236 -5.658 -0.058 -5.658 0.176 -0.931 -0.997 0.884 D 19 17 3 20 3 0 22 149 233 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 28 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - u - - - ML 21 20 3 23 3 1 25 151 235 -5.658 -0.058 -5.658 0.176 -0.931 -0.997 0.884 D 22 20 3 23 3 0 21 148 232 -11.551 -1.585 -0.585 IL 23 23 3 23 3 2 27 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 1 25 150 234 -5.658 -0.058 -5.658 0.244 -0.924 -0.981 0.834 D 25 23 3 26 3 0 20 146 230 -11.551 -1.585 -0.585 IL 26 26 3 26 3 2 26 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 27 26 3 29 3 1 24 148 232 -5.658 -0.058 -5.658 -1.264 0.912 -1.447 0.418 D 28 26 3 29 3 0 19 145 229 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 26 155 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 23 147 231 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 31 29 3 32 3 0 19 144 227 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 25 153 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 22 146 229 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 34 32 3 35 3 0 18 143 226 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 24 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 22 144 228 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 37 35 3 38 3 0 17 141 224 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 23 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 21 143 226 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 40 38 3 41 3 0 17 140 223 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 23 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 20 142 225 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 43 41 3 44 3 0 16 139 221 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 22 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 19 140 223 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 46 44 3 47 3 0 15 137 220 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 21 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 19 139 222 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 49 47 3 50 3 0 15 136 219 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 20 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 18 138 220 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 52 50 3 53 3 0 14 135 217 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 19 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 17 136 219 -5.658 -0.058 -5.658 0.130 -1.552 1.090 -1.198 D 55 53 3 56 3 0 13 133 216 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 19 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 16 135 218 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 58 56 3 59 3 0 13 132 214 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 18 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 15 134 216 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 61 59 3 62 3 0 12 131 213 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 17 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - a - - - ML 63 62 3 65 3 1 14 132 215 -5.658 -0.058 -5.658 0.752 -0.939 -0.955 0.354 D 64 62 3 65 3 0 12 130 211 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 16 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - u - - - ML 66 65 3 68 3 1 14 131 213 -5.658 -0.058 -5.658 0.244 -0.924 -0.981 0.834 D 67 65 3 68 3 0 11 128 210 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 15 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - a - - - ML 69 68 3 71 3 1 13 130 212 -5.658 -0.400 -2.170 0.760 -1.325 0.481 -0.969 D 70 68 3 71 3 0 11 128 209 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 15 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 12 129 210 -5.332 -0.073 -5.332 -1.352 -1.949 1.600 -1.659 D 73 71 3 74 3 0 10 127 208 -13.691 -0.237 -2.725 IL 74 74 3 74 3 1 14 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 12 127 209 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 76 74 3 77 3 0 7 124 205 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 13 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 11 126 207 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 79 77 3 80 3 0 7 123 204 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 13 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 11 125 206 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 82 80 3 83 3 0 6 121 202 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 12 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 10 123 204 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 85 83 3 86 3 0 5 120 201 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 12 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 3 1 9 122 203 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 88 86 3 89 3 0 5 119 199 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 11 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 90 89 3 92 3 1 9 120 201 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 91 89 3 92 3 0 4 117 198 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 10 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 8 119 200 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 94 92 3 95 3 0 4 116 196 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 10 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 8 118 198 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 97 95 3 98 3 0 3 114 194 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 9 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - G - - - ML 99 98 3 101 3 1 7 116 196 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 100 98 3 101 3 0 3 113 193 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 9 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 102 101 3 104 3 1 7 115 195 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 103 101 3 104 3 0 2 112 191 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 8 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 105 104 3 107 3 1 6 114 193 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 106 104 3 107 3 0 2 110 190 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 7 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 5 112 192 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 109 107 3 110 3 0 1 109 188 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 7 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 111 110 3 113 3 1 5 111 190 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 112 110 3 113 3 0 1 107 187 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 6 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 4 109 189 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 115 113 3 116 3 0 0 106 185 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 6 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - u - - - ML 117 116 3 119 3 1 4 108 187 -5.658 -0.058 -5.658 -1.182 0.334 -1.360 0.933 D 118 116 3 119 3 0 0 105 183 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 5 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 120 119 3 122 3 1 4 107 185 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 121 119 3 122 3 0 0 103 182 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 5 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - - - ML 123 122 3 125 3 1 3 105 184 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 124 122 3 125 3 0 0 102 180 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 4 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - c - - - ML 126 125 3 128 3 1 3 104 182 -5.658 -0.058 -5.658 -1.264 0.912 -1.447 0.418 D 127 125 3 128 3 0 0 100 178 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 3 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - u - - - ML 129 128 3 131 3 1 2 102 180 -5.658 -0.058 -5.658 0.244 -0.924 -0.981 0.834 D 130 128 3 131 3 0 0 99 177 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - C - - - ML 132 131 3 134 3 1 1 101 179 -5.658 -0.400 -2.170 -2.096 1.677 -2.304 -1.448 D 133 131 3 134 3 0 0 98 175 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - C - - - ML 135 134 3 137 3 1 2 100 178 -5.332 -0.073 -5.332 -1.435 1.465 -1.598 -0.890 D 136 134 3 137 3 0 0 96 174 -13.691 -3.725 -0.114 IL 137 137 3 137 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 138 137 3 140 3 1 1 98 176 -5.332 -0.073 -5.332 1.536 -1.631 -1.358 -1.370 D 139 137 3 140 3 0 0 96 174 -13.691 -0.237 -2.725 IL 140 140 3 140 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - G - - - ML 141 140 3 143 3 1 1 97 174 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 142 140 3 143 3 0 0 93 170 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 144 143 3 146 3 1 1 95 172 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 145 143 3 146 3 0 0 92 168 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 147 146 3 149 3 1 1 94 170 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 148 146 3 149 3 0 0 90 167 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - G - - - ML 150 149 3 152 3 1 1 92 169 -5.658 -0.058 -5.658 0.130 -1.552 1.090 -1.198 D 151 149 3 152 3 0 0 89 165 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 91 167 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 154 152 3 155 3 0 0 87 163 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - U - - - ML 156 155 3 158 3 1 1 89 165 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 157 155 3 158 3 0 0 85 161 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - G - - - ML 159 158 3 161 3 1 1 88 163 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 160 158 3 161 3 0 0 84 159 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - a - - - ML 162 161 3 164 3 1 1 86 162 -5.658 -0.058 -5.658 0.760 -1.325 0.481 -0.969 D 163 161 3 164 3 0 0 82 158 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 165 164 3 167 3 1 1 84 160 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 166 164 3 167 3 0 0 81 156 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 168 167 3 170 3 1 1 83 158 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 169 167 3 170 3 0 0 79 154 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - A - - - ML 171 170 3 173 3 1 1 81 156 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 172 170 3 173 3 0 0 77 152 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - U - - - ML 174 173 3 176 3 1 1 80 154 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 175 173 3 176 3 0 0 76 150 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 88 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - A - - - ML 177 176 3 179 3 1 1 78 152 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 178 176 3 179 3 0 0 74 148 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - G - - - ML 180 179 3 182 3 1 1 76 150 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 181 179 3 182 3 0 0 72 146 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 85 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - G - - - ML 183 182 3 185 3 1 1 74 148 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 184 182 3 185 3 0 0 71 144 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - C - - - ML 186 185 3 188 3 1 1 73 146 -5.658 -0.058 -5.658 -2.096 1.677 -2.304 -1.448 D 187 185 3 188 3 0 0 69 142 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - U - - - ML 189 188 3 191 3 1 1 71 144 -2.170 -0.400 -5.658 -1.835 -1.479 -2.002 1.638 D 190 188 3 191 3 0 0 67 140 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 72 145 -0.990 -1.010 -14.338 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - U - - - ML 192 191 3 194 3 1 1 69 142 -5.658 -0.058 -5.658 -1.835 -1.479 -2.002 1.638 D 193 191 3 194 3 0 0 65 138 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - G - - - ML 195 194 3 197 3 1 1 67 140 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 196 194 3 197 3 0 0 63 135 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - G - - - ML 198 197 3 200 3 1 1 65 138 -5.658 -0.058 -5.658 -1.866 -2.670 1.756 -2.389 D 199 197 3 200 3 0 0 61 133 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - u - - - ML 201 200 3 203 3 1 1 63 135 -2.170 -0.400 -5.658 0.244 -0.924 -0.981 0.834 D 202 200 3 203 3 0 0 60 131 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 63 135 -5.712 -0.028 -13.356 0.000 0.000 0.000 0.000 [ MATL 68 ] 71 - u - - - ML 204 203 3 206 3 1 1 62 134 -5.658 -0.058 -5.658 -1.182 0.334 -1.360 0.933 D 205 203 3 206 3 0 0 58 129 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 72 - c - - - ML 207 206 3 209 3 1 1 60 132 -5.658 -0.058 -5.658 -1.264 0.912 -1.447 0.418 D 208 206 3 209 3 0 0 55 126 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 73 - u - - - ML 210 209 3 212 3 1 1 58 129 -5.658 -0.058 -5.658 -0.849 -0.970 0.256 0.799 D 211 209 3 212 3 0 0 52 123 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 74 - G - - - ML 213 212 3 215 3 1 1 55 126 -5.658 -0.058 -5.658 0.130 -1.552 1.090 -1.198 D 214 212 3 215 3 0 0 49 119 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 75 - A - - - ML 216 215 3 218 3 1 1 52 122 -5.658 -0.058 -5.658 1.749 -2.404 -2.142 -2.165 D 217 215 3 218 3 0 0 44 114 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 76 - u - - - ML 219 218 3 221 3 1 1 48 117 -5.658 -0.058 -5.658 -1.187 0.260 -1.364 0.982 D 220 218 3 221 3 0 0 32 101 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 77 - a - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 0.804 -0.950 -0.964 0.291 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TtnuCD11 ACC RF02288 DESC Tetrahymena snoRNA TtnuCD11 LENG 74 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 08:05:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02288/CM NSEQ 3 EFFN 2.850586 CKSUM 15560091 STATS LOCAL MSV -8.5290 0.71866 STATS LOCAL VITERBI -9.2757 0.71866 STATS LOCAL FORWARD -3.6790 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41806 1.50225 1.42169 1.22458 1.38629 1.38629 1.38629 1.38629 0.02390 5.04833 4.06315 0.39730 1.11515 0.00000 * 1 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 2 1.25869 1.94835 1.26370 1.23492 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 3 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 4 1.26459 2.03185 2.07741 0.77371 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 5 0.81334 2.04841 2.05822 1.20397 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 6 1.26459 2.03185 2.07741 0.77371 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 7 1.26459 2.03185 2.07741 0.77371 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 8 1.21743 2.02707 2.06612 0.80830 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 9 2.26275 0.75436 2.38955 1.09675 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 10 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 11 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 12 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 13 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 14 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 15 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 16 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 17 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 18 1.29638 2.46231 0.63067 2.21635 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 19 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 20 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 21 0.86515 2.03704 2.04813 1.14061 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 22 1.21743 2.02707 2.06612 0.80830 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 23 0.85928 2.30462 1.05262 2.05797 - a - - : 1.38629 1.38629 1.38629 1.38629 0.27704 3.92209 1.50429 1.46634 0.26236 1.09861 0.40547 24 2.32335 2.73693 0.27695 2.53589 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05092 3.69597 3.69597 1.46634 0.26236 0.16402 1.88867 25 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 26 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 27 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 28 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 29 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 30 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 31 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 32 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 33 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 34 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 35 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 36 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 37 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 38 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 39 2.20593 1.15445 2.32865 0.73983 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 40 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 41 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 42 2.26275 0.75436 2.38955 1.09675 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 43 1.21743 2.02707 2.06612 0.80830 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 44 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.27704 3.92209 1.50429 1.46634 0.26236 1.09861 0.40547 45 2.38130 0.37093 2.49372 2.00341 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05092 3.69597 3.69597 1.46634 0.26236 2.58181 0.07865 46 0.32155 2.51697 2.32772 2.33561 - A - - : 1.38629 1.38629 1.38629 1.38629 0.05092 3.69597 3.69597 1.46634 0.26236 0.16402 1.88867 47 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 48 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 49 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 50 1.29638 2.46231 0.63067 2.21635 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 51 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 52 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 53 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 54 0.85928 2.30462 1.05262 2.05797 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 55 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 56 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 57 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 58 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 59 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 60 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 61 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 62 2.83907 0.22405 2.98351 2.39003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 63 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.27704 1.50429 3.92209 0.69993 0.68641 1.09861 0.40547 64 2.65828 2.41146 2.77424 0.25122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 65 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 66 2.67947 3.23696 0.16915 3.04202 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 67 1.21743 2.02707 2.06612 0.80830 - u - - : 1.38629 1.38629 1.38629 1.38629 0.27704 1.50429 3.92209 0.01927 3.95901 1.09861 0.40547 68 2.20593 1.15445 2.32865 0.73983 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 69 2.26275 0.75436 2.38955 1.09675 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 70 1.97463 2.05862 1.20869 0.83248 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 71 1.29638 2.46231 0.63067 2.21635 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 72 0.17390 3.05256 2.87116 2.88686 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 73 2.20924 1.20588 2.33198 0.70586 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04040 3.92209 3.92209 1.46634 0.26236 1.09861 0.40547 74 0.82894 2.04460 2.05473 1.18440 - a - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //