INFERNAL1/a [1.1.5 | Sep 2023] NAME TtnuCD4 ACC RF02281 DESC Tetrahymena snoRNA TtnuCD4 STATES 184 NODES 62 CLEN 60 W 139 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 16:36:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02281/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 3.000000 CKSUM 3089056430 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 74.80 NC 40.10 EFP7GF -7.1465 0.72155 ECMLC 0.67996 -9.27857 0.24734 1600000 780202 0.001538 ECMGC 0.40881 -15.75597 -1.66035 1600000 127248 0.003143 ECMLI 0.50081 -10.27963 1.71888 1600000 488492 0.002457 ECMGI 0.45414 -8.18408 3.40579 1600000 77253 0.005178 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 139 222 -7.331 -7.538 -0.041 -5.952 IL 1 1 2 1 4 1 20 142 224 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 141 224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 19 140 222 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 4 2 3 5 3 0 14 136 219 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 21 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 18 138 221 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 7 5 3 8 3 0 14 135 217 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 20 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 18 137 219 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 10 8 3 11 3 0 13 134 216 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 19 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 17 136 218 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 13 11 3 14 3 0 12 133 214 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 19 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 16 134 216 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 16 14 3 17 3 0 12 131 213 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 18 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 16 133 215 -5.700 -0.057 -5.700 0.238 -0.959 -1.021 0.859 D 19 17 3 20 3 0 11 130 211 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 17 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 15 132 213 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 22 20 3 23 3 0 10 128 210 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 17 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 14 130 212 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 25 23 3 26 3 0 10 127 208 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 16 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 14 129 210 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 28 26 3 29 3 0 9 126 207 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 15 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 13 128 209 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 31 29 3 32 3 0 8 124 205 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 15 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 12 126 207 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 34 32 3 35 3 0 8 123 204 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 14 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 12 125 206 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 37 35 3 38 3 0 7 122 202 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 13 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 11 124 204 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 40 38 3 41 3 0 6 120 201 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 13 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 11 122 203 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 43 41 3 44 3 0 6 119 199 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 12 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 10 121 201 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 46 44 3 47 3 0 5 118 198 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 11 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 9 120 200 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 49 47 3 50 3 0 5 116 196 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 11 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 9 118 198 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 52 50 3 53 3 0 4 115 195 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 10 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 8 117 197 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 55 53 3 56 3 0 4 113 193 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 10 124 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - G - - - ML 57 56 3 59 3 1 8 115 195 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 58 56 3 59 3 0 3 112 192 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 9 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 7 114 194 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 61 59 3 62 3 0 2 111 190 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 8 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 6 113 192 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 64 62 3 65 3 0 2 109 188 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 8 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 6 111 190 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 67 65 3 68 3 0 1 108 187 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 7 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 5 110 189 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 70 68 3 71 3 0 1 107 185 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 7 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - u - - - ML 72 71 3 74 3 1 5 108 187 -2.168 -0.399 -5.700 -1.236 0.273 -1.415 0.994 D 73 71 3 74 3 0 0 105 184 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 5 108 187 -5.759 -0.027 -13.403 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 75 74 3 77 3 1 4 107 186 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 76 74 3 77 3 0 0 104 182 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 6 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - c - - - ML 78 77 3 80 3 1 4 106 184 -5.700 -0.057 -5.700 0.241 0.843 -1.203 -0.763 D 79 77 3 80 3 0 0 102 181 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - g - - - ML 81 80 3 83 3 1 3 104 183 -5.700 -0.057 -5.700 -0.930 -1.166 0.905 0.210 D 82 80 3 83 3 0 0 101 179 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 5 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 3 103 181 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 85 83 3 86 3 0 0 100 177 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 4 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 87 86 3 89 3 1 3 101 179 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 88 86 3 89 3 0 0 98 176 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 4 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 90 89 3 92 3 1 2 100 178 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 91 89 3 92 3 0 0 97 174 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 4 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 93 92 3 95 3 1 2 99 176 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 94 92 3 95 3 0 0 95 172 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 3 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - C - - - ML 96 95 3 98 3 1 2 97 175 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 97 95 3 98 3 0 0 94 171 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 3 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - U - - - ML 99 98 3 101 3 1 1 96 173 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 100 98 3 101 3 0 0 92 169 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - G - - - ML 102 101 3 104 3 1 1 94 171 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 103 101 3 104 3 0 0 91 168 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - A - - - ML 105 104 3 107 3 1 1 93 169 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 106 104 3 107 3 0 0 90 166 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 2 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 108 107 3 110 3 1 1 91 168 -5.700 -0.399 -2.168 1.769 -2.512 -2.247 -2.276 D 109 107 3 110 3 0 0 89 165 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 2 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 111 110 3 113 3 1 1 90 166 -1.976 -0.470 -5.372 1.569 -1.719 -1.450 -1.460 D 112 110 3 113 3 0 0 88 165 -13.729 -0.230 -2.763 IL 113 113 3 113 3 1 2 90 166 -5.613 -0.030 -13.257 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - A - - - ML 114 113 3 116 3 1 1 89 165 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 115 113 3 116 3 0 0 85 161 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 96 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - A - - - ML 117 116 3 119 3 1 1 87 163 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 118 116 3 119 3 0 0 84 159 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - a - - - ML 120 119 3 122 3 1 1 86 161 -5.700 -0.057 -5.700 0.780 -0.974 -0.996 0.347 D 121 119 3 122 3 0 0 82 157 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - - - ML 123 122 3 125 3 1 1 84 160 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 124 122 3 125 3 0 0 81 156 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 92 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - C - - - ML 126 125 3 128 3 1 1 82 158 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 127 125 3 128 3 0 0 79 154 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 90 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - c - - - ML 129 128 3 131 3 1 1 81 156 -2.304 -0.362 -5.700 0.241 0.843 -1.203 -0.763 D 130 128 3 131 3 0 0 78 152 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 81 156 -5.613 -0.030 -13.257 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - a - - - ML 132 131 3 134 3 1 1 80 155 -5.700 -0.057 -5.700 0.819 -0.982 -1.003 0.300 D 133 131 3 134 3 0 0 76 151 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - - - ML 135 134 3 137 3 1 1 78 153 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 136 134 3 137 3 0 0 74 149 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - u - - - ML 138 137 3 140 3 1 1 76 151 -5.700 -0.057 -5.700 -1.232 0.328 -1.412 0.958 D 139 137 3 140 3 0 0 73 147 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - C - - - ML 141 140 3 143 3 1 1 75 149 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 142 140 3 143 3 0 0 71 145 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - c - - - ML 144 143 3 146 3 1 1 73 147 -5.700 -0.057 -5.700 0.241 0.843 -1.203 -0.763 D 145 143 3 146 3 0 0 69 143 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - u - - - ML 147 146 3 149 3 1 1 71 145 -5.700 -0.057 -5.700 0.238 -0.959 -1.021 0.859 D 148 146 3 149 3 0 0 67 141 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 1 70 143 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 151 149 3 152 3 0 0 66 138 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - U - - - ML 153 152 3 155 3 1 1 68 141 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 154 152 3 155 3 0 0 64 136 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - u - - - ML 156 155 3 158 3 1 1 66 139 -5.700 -0.057 -5.700 0.187 -0.964 -1.033 0.895 D 157 155 3 158 3 0 0 62 134 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - a - - - ML 159 158 3 161 3 1 1 64 136 -5.700 -0.057 -5.700 0.841 0.184 -1.099 -0.724 D 160 158 3 161 3 0 0 60 131 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - U - - - ML 162 161 3 164 3 1 1 62 134 -5.700 -0.057 -5.700 -1.239 0.242 -1.418 1.014 D 163 161 3 164 3 0 0 57 129 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - C - - - ML 165 164 3 167 3 1 1 60 131 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 166 164 3 167 3 0 0 55 126 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - U - - - ML 168 167 3 170 3 1 1 58 129 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 169 167 3 170 3 0 0 52 123 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - G - - - ML 171 170 3 173 3 1 1 55 126 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 172 170 3 173 3 0 0 49 119 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - A - - - ML 174 173 3 176 3 1 1 52 122 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 175 173 3 176 3 0 0 44 114 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - c - - - ML 177 176 3 179 3 1 1 48 117 -5.700 -0.057 -5.700 0.241 0.843 -1.203 -0.763 D 178 176 3 179 3 0 0 32 101 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 63 - a - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 0.804 0.237 -1.097 -0.718 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TtnuCD4 ACC RF02281 DESC Tetrahymena snoRNA TtnuCD4 LENG 60 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 9 16:36:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02281/CM NSEQ 3 EFFN 3.000000 CKSUM 3089056430 STATS LOCAL MSV -8.2919 0.72155 STATS LOCAL VITERBI -8.8966 0.72155 STATS LOCAL FORWARD -3.2648 0.72155 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.18641 1.34387 1.80666 1.31064 1.38629 1.38629 1.38629 1.38629 0.02311 5.08141 4.09624 0.39730 1.11515 0.00000 * 1 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 1.22156 2.05103 2.09397 0.79092 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.24302 1.19696 2.36742 0.69710 - u - - : 1.38629 1.38629 1.38629 1.38629 0.27680 1.50256 3.95124 0.01863 3.99205 1.09861 0.40547 25 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 1.21903 0.80175 2.21985 1.91520 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.03092 2.19480 0.75892 1.24052 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.27680 3.95124 1.50256 1.46634 0.26236 1.09861 0.40547 37 0.29885 2.57791 2.39141 2.39804 - A - - : 1.38629 1.38629 1.38629 1.38629 0.32608 1.36998 3.72393 0.02065 3.89050 0.15941 1.91494 38 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.84535 2.06152 2.07646 1.14583 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 1.21903 0.80175 2.21985 1.91520 - c - - : 1.38629 1.38629 1.38629 1.38629 0.25061 1.59730 3.95124 0.02065 3.89050 1.09861 0.40547 44 0.81882 2.06729 2.08175 1.17828 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 2.24041 1.15894 2.36477 0.72197 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 1.21903 0.80175 2.21985 1.91520 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 1.22156 2.05103 2.09397 0.79092 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 1.25646 2.05477 2.10243 0.76559 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 0.80307 1.25887 2.14827 1.88790 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 2.24496 1.21861 2.36941 0.68341 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 1.21903 0.80175 2.21985 1.91520 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 60 0.82891 1.22194 2.14668 1.88424 - a - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //