# STOCKHOLM 1.0
#=GF ID MtlS
#=GF AC RF02268
#=GF DE MtlS RNA
#=GF AU Burge SW; 0000-0002-2506-927X
#=GF GA 80.0
#=GF NC 78.9
#=GF TC 86.4
#=GF SE PMID 22101846
#=GF SS Predicted; WAR; Burge SW
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.34 -Z 2958934 CM SEQDB
#=GF DR GO; 0015797; mannitol transport;
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 22101846
#=GF RT The Vibrio cholerae mannitol transporter is regulated
#=GF RT post-transcriptionally by the MtlS small RNA.
#=GF RA Mustachio LM, Aksit S, Mistry RH, Scheffler R, Yamada A, Liu JM
#=GF RL Journal of Bacteriology. 2012;194:1-12.
#=GF RN [2]
#=GF RM 25826566
#=GF RT A cis-regulatory antisense RNA represses translation in Vibrio cholerae
#=GF RT through extensive complementarity and proximity to the target locus.
#=GF RA Chang H, Replogle JM, Vather N, Tsao-Wu M, Mistry R, Liu JM
#=GF RL RNA Biol. 2015;12:136-148.
#=GF WK MtlS_RNA
#=GF SQ 6

FM178379.1/3046315-3046195   UUCCCCGUUUGAGGUUUUUAUU---AAA--CUGU--C-UAA-AAAUGACUCGCCAA-AGUCAU-UGGUUAAUUUCUAAGUACAGACAUAAUUUACC-AUAGAUUUUUUAAUUGAACCGAUAACGGGAAAUUCG
CR378676.1/60481-60604       UUCCCCGUUUGAUGUU-CUAUUUUUAUA--UUUUGUUGUAAGUAACGGUUCGCCAA-AACCG-----UCGAUUGCUUAGUACCCAAUUAAUUUACCAUAGAUAUUUAAAUUAGAACUGAUAACGGGUUUUUUG
AE003853.1/994876-994755     UCCCCCGUUGGAUGUU-CCGUU--UGAA--UUUAAUCGUAG-UAACGGUUCGGCAAAAACCG-----UUGAUUGCUUAGUACACAAUCACUCUACCACACAAAUUUCGAAUGGAAUCACCAACGGGUUUUUUG
CP002469.1/2842639-2842522   UUCCCCGUUUGAUGUU-CUGAU---GAA--UGUUGUAGUA----ACGGUUCGCCAA-AACCG----UUUGAUUGCUUAGUUCUCAAUCAAUCUACCACAUAUUUUUCUAUUAGAACUGAUAGCGGGUUUUUCG
ACCV01000146.1/2554-2435     UUCCCCGUUCGAUGUU-CUGAU---GAA--UAUUGUAGUAG--UACGGUUCGCCAA-AACCG----CUUGAUUGCUUAGUUCUCAAUCAAUUUACCACACAAAUUCAUUCUGGAACUGACGACGGGUUUUUUG
ACFO01000016.1/355731-355855 UUCCCCGUUCGAUGUU-CUGAU---GAAUAUGUUGUCGUAA---ACGGUUCGCCAA-AACCGCUUGUUUGAUUGCUUAGUACCCAAUCAAUUUACCACACAUUUUCCAAUUGGAACUGACGACGGGUUUUUCG
#=GC SS_cons                 :::((((((----(((.(((((...(((..(((-((-((((.,,,<<<<<______.>>>>>....,<<<<<<<_________>>>>>>>,))))-)))))--)))--))))))))----)))))):::::::
#=GC RF                      UUCCCCGuuuGAuGuu.ccagu...gaa..uguugucGuag.uaAcGGuuCGcCAA.aaCCg....uuugauugCUuAGUaCacaaucaaUcuaCCacacaauuucuuacuggaaCuGAuaaCGGGuuuUUuG
//
