INFERNAL1/a [1.1.4 | Dec 2020] NAME XIST_intron ACC RF02266 DESC XIST 3' intron conserved motif STATES 208 NODES 52 CLEN 68 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:55:37 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 1.684570 CKSUM 2712976146 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 80.10 NC 58.40 EFP7GF -11.2687 0.71909 ECMLC 0.60822 -5.66771 3.58715 1600000 334048 0.003592 ECMGC 0.45769 -16.43755 -3.30271 1600000 163266 0.002450 ECMLI 0.58434 -4.15754 5.09655 1600000 267709 0.004482 ECMGI 0.48535 -11.07054 0.36101 1600000 102715 0.003894 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 85 105 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 IL 1 1 2 1 6 1 12 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 12 86 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 71 U A - - MP 3 2 3 7 6 2 17 85 105 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.993 -3.811 -3.853 -0.121 -2.838 -4.435 1.486 -3.519 -3.860 0.164 -4.242 -1.716 3.225 -4.151 -0.519 -2.702 ML 4 2 3 7 6 1 10 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 9 83 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 5 81 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 11 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 12 84 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 70 U A - - MP 9 8 6 13 6 2 16 83 103 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.247 -3.194 -3.325 0.247 -2.835 -4.089 1.270 -3.351 -3.359 0.581 -3.861 -1.340 3.114 -2.118 -0.638 -2.313 ML 10 8 6 13 6 1 9 82 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 9 81 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 79 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 11 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 11 82 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 69 G C - - MP 15 14 6 19 6 2 16 81 101 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.319 -2.867 -4.390 0.518 -4.911 -4.566 -0.314 -4.696 -4.080 3.516 -4.451 -0.212 -0.631 -4.177 -2.328 -3.280 ML 16 14 6 19 6 1 9 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 9 79 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 4 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 10 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 11 80 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 68 a u - - MP 21 20 6 25 6 2 15 79 99 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.285 -2.387 -3.378 2.831 -3.839 -4.626 0.384 -3.556 -3.283 1.631 -3.830 1.008 0.109 -3.770 -1.514 -2.246 ML 22 20 6 25 6 1 8 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 8 77 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 10 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 10 78 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 67 C G - - MP 27 26 6 31 6 2 15 77 97 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.060 -3.999 -3.831 -0.257 -2.635 -4.297 3.334 -3.407 -3.868 0.007 -4.184 -1.997 0.944 -4.147 0.093 -2.721 ML 28 26 6 31 6 1 8 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 8 75 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 9 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 10 76 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 66 C G - - MP 33 32 6 37 6 2 14 75 95 -9.069 -9.008 -0.049 -5.440 -8.064 -8.459 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 34 32 6 37 6 1 8 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 7 73 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 3 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 9 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 9 74 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 65 u a - - MP 39 38 6 43 6 2 13 73 93 -9.042 -8.981 -0.022 -7.758 -8.037 -8.432 -3.537 -3.431 -3.424 0.254 -2.432 -4.006 2.115 -3.121 -3.447 0.568 -3.838 -1.414 2.728 -3.681 -0.122 -2.328 ML 40 38 6 43 6 1 8 72 92 -6.560 -6.906 -0.948 -1.315 -6.756 -4.285 0.028 -0.398 -0.570 0.631 MR 41 38 6 43 6 1 7 71 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 2 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 9 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 9 72 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 64 U A - - MP 45 44 6 49 6 2 13 71 91 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.993 -3.811 -3.853 -0.121 -2.838 -4.435 1.486 -3.519 -3.860 0.164 -4.242 -1.716 3.225 -4.151 -0.519 -2.702 ML 46 44 6 49 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 6 69 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 2 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 8 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 9 70 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 63 U A - - MP 51 50 6 55 6 2 11 69 89 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.781 -3.700 -3.674 -0.027 -2.688 -4.259 1.627 -3.377 -3.696 0.259 -4.093 -1.707 3.087 -3.928 0.032 -2.558 ML 52 50 6 55 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 6 67 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 8 68 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 62 U A - - MP 57 56 6 61 6 2 10 67 87 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.735 -3.659 -3.636 0.009 -2.661 -4.227 1.652 -3.347 -3.657 0.292 -4.058 -1.673 3.051 -3.886 0.136 -2.525 ML 58 56 6 61 6 1 6 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 5 65 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 7 66 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 61 C G - - MP 63 62 6 67 6 2 8 65 85 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.033 -3.973 -3.809 -0.232 -2.619 -4.279 3.318 -3.388 -3.845 0.031 -4.165 -1.972 0.964 -4.122 0.149 -2.699 ML 64 62 6 67 6 1 5 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 6 64 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 60 c g - - MP 69 68 6 73 4 2 6 63 83 -4.674 -7.051 -0.104 -5.465 -2.612 -2.631 -2.717 0.799 -2.229 -3.507 2.147 -2.746 -1.688 0.981 -3.258 -0.833 2.048 -2.878 0.471 -1.756 ML 70 68 6 73 4 1 4 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 2 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 1 61 81 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 5 64 84 -1.854 -2.538 -0.942 -5.023 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 5 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 75 74 6 77 3 1 5 60 80 -7.868 -0.065 -4.661 1.299 -1.122 -1.219 -0.621 D 76 74 6 77 3 0 0 59 79 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - U - - - ML 78 77 3 80 3 1 5 59 79 -7.826 -0.023 -6.480 -1.235 -1.276 -1.954 1.538 D 79 77 3 80 3 0 0 58 78 -6.493 -1.160 -0.885 IL 80 80 3 80 3 1 4 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - U - - - ML 81 80 3 83 3 1 5 58 78 -7.868 -0.022 -6.522 -0.949 -0.753 -1.677 1.365 D 82 80 3 83 3 0 0 57 77 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 3 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 84 83 3 86 3 1 4 57 77 -7.868 -0.022 -6.522 -1.310 -1.338 -2.034 1.564 D 85 83 3 86 3 0 0 56 76 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - U - - - ML 87 86 3 89 3 1 4 56 76 -7.868 -0.022 -6.522 -1.310 -1.338 -2.034 1.564 D 88 86 3 89 3 0 0 55 75 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - U - - - ML 90 89 3 92 3 1 3 55 75 -7.868 -0.022 -6.522 -0.430 -0.829 -0.908 1.112 D 91 89 3 92 3 0 0 54 74 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 93 92 3 95 3 1 3 54 74 -7.868 -0.022 -6.522 1.187 -0.683 -1.145 -0.625 D 94 92 3 95 3 0 0 53 72 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 96 95 3 98 3 1 2 53 73 -7.868 -0.022 -6.522 1.196 -1.168 -1.167 -0.289 D 97 95 3 98 3 0 0 52 71 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - A - - - ML 99 98 3 101 3 1 2 52 72 -8.265 -0.020 -6.583 1.196 -1.168 -1.167 -0.289 D 100 98 3 101 3 0 0 51 70 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 59 - A - - MR 102 101 3 104 5 1 1 51 71 -7.010 -0.074 -6.825 -5.102 -7.929 1.674 -2.178 -1.830 -1.702 D 103 101 3 104 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 23 58 U A - - MP 105 104 3 109 6 2 2 50 70 -9.054 -8.994 -0.022 -7.770 -8.050 -8.445 -3.922 -3.737 -3.789 -0.052 -2.791 -4.377 1.531 -3.466 -3.797 0.246 -4.183 -1.644 3.182 -4.082 -0.473 -2.646 ML 106 104 3 109 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 48 68 -7.139 -5.868 -1.354 -5.846 -0.980 -4.059 0.689 -0.605 -0.312 -0.113 D 108 104 3 109 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 24 57 C G - - MP 111 110 6 115 6 2 2 48 68 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 112 110 6 115 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 25 56 A U - - MP 117 116 6 121 6 2 2 46 66 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.636 -2.709 -3.665 3.221 -3.928 -4.977 0.362 -3.717 -3.564 1.246 -4.104 -0.211 -0.056 -4.190 -1.579 -2.509 ML 118 116 6 121 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 26 55 C G - - MP 123 122 6 127 6 2 2 44 64 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 124 122 6 127 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 27 54 U A - - MP 129 128 6 133 6 2 2 42 62 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.993 -3.811 -3.853 -0.121 -2.838 -4.435 1.486 -3.519 -3.860 0.164 -4.242 -1.716 3.225 -4.151 -0.519 -2.702 ML 130 128 6 133 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 28 53 C G - - MP 135 134 6 139 4 2 2 40 60 -4.401 -7.051 -0.116 -5.465 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 136 134 6 139 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 41 60 -1.896 -2.580 -0.904 -5.065 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 141 140 6 143 3 1 1 37 56 -7.868 -0.022 -6.522 1.463 -1.690 -1.013 -1.189 D 142 140 6 143 3 0 0 36 55 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - c - - - ML 144 143 3 146 3 1 1 36 55 -7.868 -0.022 -6.522 -0.190 0.870 -1.318 -0.161 D 145 143 3 146 3 0 0 35 54 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 147 146 3 149 3 1 1 35 54 -5.067 -0.060 -6.522 1.674 -2.178 -1.830 -1.702 D 148 146 3 149 3 0 0 33 52 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 36 56 -1.520 -0.743 -4.220 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - G - - - ML 150 149 3 152 3 1 1 34 53 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 151 149 3 152 3 0 0 32 52 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - A - - - ML 153 152 3 155 3 1 1 32 52 -7.868 -0.022 -6.522 1.674 -2.178 -1.830 -1.702 D 154 152 3 155 3 0 0 31 50 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - G - - - ML 156 155 3 158 3 1 1 31 50 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 157 155 3 158 3 0 0 30 49 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - G - - - ML 159 158 3 161 3 1 1 30 49 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 160 158 3 161 3 0 0 29 48 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - G - - - ML 162 161 3 164 3 1 1 29 48 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 163 161 3 164 3 0 0 28 47 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 165 164 3 167 3 1 1 28 47 -7.868 -0.022 -6.522 -1.031 -0.907 -1.757 1.423 D 166 164 3 167 3 0 0 27 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 168 167 3 170 3 1 1 27 46 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 169 167 3 170 3 0 0 26 45 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - - - ML 171 170 3 173 3 1 1 26 45 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 172 170 3 173 3 0 0 25 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - - - ML 174 173 3 176 3 1 1 25 44 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 175 173 3 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - a - - - ML 177 176 3 179 3 1 1 24 42 -7.868 -0.065 -4.661 0.830 -0.399 -0.771 -0.187 D 178 176 3 179 3 0 0 23 41 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - u - - - ML 180 179 3 182 3 1 1 22 41 -7.826 -0.023 -6.480 -0.610 0.554 -1.382 0.579 D 181 179 3 182 3 0 0 21 40 -6.493 -1.160 -0.885 IL 182 182 3 182 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - A - - - ML 183 182 3 185 3 1 1 21 40 -7.868 -0.022 -6.522 1.674 -2.178 -1.830 -1.702 D 184 182 3 185 3 0 0 20 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - G - - - ML 186 185 3 188 3 1 1 20 39 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 187 185 3 188 3 0 0 19 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - - - ML 189 188 3 191 3 1 1 19 38 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 190 188 3 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - A - - - ML 192 191 3 194 3 1 1 18 36 -7.868 -0.022 -6.522 1.674 -2.178 -1.830 -1.702 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - G - - - ML 195 194 3 197 3 1 1 16 35 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - G - - - ML 198 197 3 200 3 1 1 15 33 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - A - - - ML 201 200 3 203 3 1 1 13 32 -7.868 -0.059 -4.807 1.205 -0.907 -0.925 -0.657 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - a - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 0.976 -0.661 -0.754 -0.308 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME XIST_intron ACC RF02266 DESC XIST 3' intron conserved motif LENG 68 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:55:38 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 20 EFFN 2.426758 CKSUM 2712976146 STATS LOCAL MSV -8.6193 0.71909 STATS LOCAL VITERBI -9.1724 0.71909 STATS LOCAL FORWARD -3.6638 0.71909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26518 1.75162 1.20898 1.40315 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 0.00000 * 1 3.04940 1.93920 2.78591 0.29153 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 2 2.72203 2.08094 2.46473 0.32239 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 3 2.44496 3.18447 0.19147 3.07636 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 4 0.60218 2.70992 1.18132 2.53870 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 5 2.97479 0.34263 2.74426 1.74442 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 6 3.24035 0.23013 3.01880 2.14082 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 7 2.52553 1.27847 2.29403 0.61496 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 8 2.97191 1.93462 2.75112 0.30049 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 9 2.85315 1.77217 2.62234 0.35705 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 10 2.81690 1.73841 2.58171 0.37286 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 11 2.93878 0.35662 2.71441 1.71044 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 12 2.02507 1.18948 1.76271 0.93635 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.07579 2.93277 3.92518 0.62617 0.76494 1.09861 0.40547 13 0.41113 2.26807 2.39924 1.94630 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.07645 3.92518 2.92129 1.46634 0.26236 1.09861 0.40547 14 2.58230 2.55099 3.09857 0.22154 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04173 3.89046 3.89046 1.46634 0.26236 0.54980 0.86054 15 2.28180 2.02942 2.79524 0.34901 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 16 2.64845 2.60588 3.16740 0.20667 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 17 2.64845 2.60588 3.16740 0.20667 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 18 1.81050 2.09741 2.10960 0.52363 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 19 0.48177 1.89882 2.34531 1.98963 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 20 0.48293 2.33459 2.34956 1.65670 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 21 0.48293 2.33459 2.34956 1.65670 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.07159 3.92518 3.00886 1.46634 0.26236 1.09861 0.40547 22 2.94692 1.88615 2.69466 0.31707 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04153 3.89512 3.89512 1.46634 0.26236 0.58777 0.81095 23 3.23616 0.23057 3.01678 2.14009 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 24 0.32560 2.82151 1.86747 2.75085 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 25 3.23507 0.23068 3.01625 2.13989 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 26 3.01311 1.93710 2.76980 0.29563 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 27 3.23380 0.23082 3.01564 2.13967 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.08554 2.77673 3.92518 0.54604 0.86569 1.09861 0.40547 28 0.29363 2.79888 2.20800 2.48114 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 29 1.59948 0.67110 2.48119 1.59354 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 30 0.14821 3.28030 3.00037 2.98840 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07249 2.99195 3.92518 0.65928 0.72820 1.09861 0.40547 31 2.74240 3.62599 0.14127 3.20140 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 32 0.14821 3.28030 3.00037 2.98840 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 33 2.74240 3.62599 0.14127 3.20140 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 34 2.74240 3.62599 0.14127 3.20140 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 35 2.74240 3.62599 0.14127 3.20140 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 36 2.35802 2.16992 2.87087 0.30849 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 37 2.74240 3.62599 0.14127 3.20140 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 38 2.74240 3.62599 0.14127 3.20140 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 39 2.74240 3.62599 0.14127 3.20140 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 40 0.75521 1.66526 1.99344 1.58610 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07645 3.92518 2.92129 1.46634 0.26236 1.09861 0.40547 41 1.96193 0.91830 2.51747 0.96876 44 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04173 3.89046 3.89046 1.46634 0.26236 0.54980 0.86054 42 0.14821 3.28030 3.00037 2.98840 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 43 2.74240 3.62599 0.14127 3.20140 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 44 2.74240 3.62599 0.14127 3.20140 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 45 0.14821 3.28030 3.00037 2.98840 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 46 2.74240 3.62599 0.14127 3.20140 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 47 2.74240 3.62599 0.14127 3.20140 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 48 0.47501 2.08109 2.13759 1.99961 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07159 3.92518 3.00886 1.46634 0.26236 1.09861 0.40547 49 0.64644 1.87870 1.98397 1.68320 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04153 3.89512 3.89512 1.46634 0.26236 0.58777 0.81095 50 2.41406 3.17922 0.20011 2.99001 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 51 0.33632 2.94977 1.77346 2.75662 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 52 2.40880 3.17195 0.20159 2.98133 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 53 2.94573 2.16230 2.62095 0.27491 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 54 2.39010 3.14627 0.20694 2.95074 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 55 0.36783 2.84132 1.72268 2.64749 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 56 0.14821 3.28030 3.00037 2.98840 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 57 1.13671 2.01163 0.95749 1.82326 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 58 2.12837 2.87649 0.27738 2.70501 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 59 0.46188 2.75009 1.46508 2.59130 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 60 0.43357 2.79497 1.51859 2.63565 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 61 0.33529 2.95475 1.77400 2.76262 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.10015 3.92518 2.58289 1.46634 0.26236 1.09861 0.40547 62 0.70014 2.46674 1.13621 2.32699 65 a - - > 1.38629 1.38629 1.38629 1.38629 0.04271 3.86774 3.86774 1.46634 0.26236 0.42035 1.06949 63 2.41957 3.18682 0.19857 2.99911 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 64 2.15179 2.90518 0.26911 2.73446 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 65 2.75814 1.76905 2.51061 0.37852 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 66 3.29567 0.24486 3.01292 2.03258 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 67 0.37411 2.50129 1.90743 2.50520 70 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 68 0.33156 2.97314 1.77599 2.78485 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.02034 3.90524 * 1.46634 0.26236 0.00000 * //