INFERNAL1/a [1.1.5 | Sep 2023] NAME XIST_intron ACC RF02266 DESC XIST 3' intron conserved motif STATES 208 NODES 52 CLEN 68 W 85 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 09:20:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02266/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 1.684570 CKSUM 2712976146 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 78.30 NC 68.60 EFP7GF -11.2938 0.71909 ECMLC 0.60998 -5.63053 3.59790 1600000 334114 0.003592 ECMGC 0.45523 -16.50229 -3.30742 1600000 162447 0.002462 ECMLI 0.58361 -4.17152 5.09281 1600000 267479 0.004486 ECMGI 0.48392 -11.10949 0.35467 1600000 102666 0.003896 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 85 105 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 IL 1 1 2 1 6 1 12 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 12 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 71 U A - - MP 3 2 3 7 6 2 17 85 105 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.993 -3.811 -3.853 -0.121 -2.838 -4.435 1.486 -3.519 -3.860 0.164 -4.242 -1.716 3.225 -4.151 -0.519 -2.702 ML 4 2 3 7 6 1 10 83 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 9 83 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 5 81 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 11 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 12 84 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 70 U A - - MP 9 8 6 13 6 2 16 83 103 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.227 -3.177 -3.307 0.259 -2.823 -4.072 1.275 -3.338 -3.341 0.592 -3.845 -1.327 3.105 -2.075 -0.630 -2.299 ML 10 8 6 13 6 1 9 81 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 9 81 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 79 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 11 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 11 82 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 69 G C - - MP 15 14 6 19 6 2 16 81 101 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.311 -2.863 -4.381 0.524 -4.904 -4.564 -0.308 -4.688 -4.076 3.513 -4.448 -0.197 -0.624 -4.171 -2.321 -3.271 ML 16 14 6 19 6 1 9 79 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 9 79 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 4 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 10 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 11 80 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 68 a u - - MP 21 20 6 25 6 2 15 79 99 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.289 -2.392 -3.382 2.842 -3.843 -4.632 0.380 -3.559 -3.287 1.626 -3.834 0.984 0.105 -3.776 -1.517 -2.250 ML 22 20 6 25 6 1 8 77 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 8 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 10 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 10 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 67 C G - - MP 27 26 6 31 6 2 15 77 97 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.050 -3.989 -3.823 -0.248 -2.629 -4.291 3.328 -3.400 -3.860 0.016 -4.177 -1.988 0.951 -4.138 0.113 -2.713 ML 28 26 6 31 6 1 8 75 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 8 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 9 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 10 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 66 C G - - MP 33 32 6 37 6 2 14 75 95 -9.069 -9.008 -0.046 -5.562 -8.064 -8.459 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 34 32 6 37 6 1 8 73 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 7 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 3 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 9 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 9 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 65 u a - - MP 39 38 6 43 6 2 13 73 93 -9.044 -8.984 -0.022 -7.760 -8.040 -8.435 -3.541 -3.437 -3.428 0.249 -2.434 -4.010 2.122 -3.123 -3.450 0.561 -3.842 -1.420 2.727 -3.685 -0.123 -2.331 ML 40 38 6 43 6 1 7 72 92 -6.531 -6.877 -0.974 -1.286 -6.727 -4.257 0.053 -0.391 -0.543 0.598 MR 41 38 6 43 6 1 7 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 2 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 9 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 9 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 64 U A - - MP 45 44 6 49 6 2 13 71 91 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.993 -3.811 -3.853 -0.121 -2.838 -4.435 1.486 -3.519 -3.860 0.164 -4.242 -1.716 3.225 -4.151 -0.519 -2.702 ML 46 44 6 49 6 1 7 69 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 6 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 2 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 8 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 9 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 63 U A - - MP 51 50 6 55 6 2 11 69 89 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.773 -3.693 -3.668 -0.021 -2.683 -4.254 1.632 -3.372 -3.689 0.265 -4.087 -1.701 3.081 -3.921 0.050 -2.552 ML 52 50 6 55 6 1 6 67 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 6 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 8 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 62 U A - - MP 57 56 6 61 6 2 10 67 87 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.767 -3.688 -3.662 -0.016 -2.679 -4.250 1.635 -3.368 -3.684 0.269 -4.082 -1.697 3.077 -3.915 0.064 -2.548 ML 58 56 6 61 6 1 6 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 5 65 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 61 C G - - MP 63 62 6 67 6 2 8 65 85 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.023 -3.963 -3.801 -0.223 -2.613 -4.273 3.311 -3.381 -3.836 0.040 -4.157 -1.963 0.972 -4.112 0.171 -2.690 ML 64 62 6 67 6 1 5 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 6 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 60 c g - - MP 69 68 6 73 4 2 6 63 83 -4.906 -7.051 -0.095 -5.465 -2.607 -2.626 -2.713 0.801 -2.227 -3.503 2.156 -2.744 -1.658 0.982 -3.254 -0.830 2.040 -2.873 0.448 -1.752 ML 70 68 6 73 4 1 4 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 2 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 1 61 81 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 5 64 84 -1.824 -2.507 -0.971 -4.993 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 5 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 75 74 6 77 3 1 5 60 80 -7.868 -0.066 -4.619 1.325 -1.153 -1.243 -0.685 D 76 74 6 77 3 0 0 59 79 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - U - - - ML 78 77 3 80 3 1 5 59 79 -7.824 -0.023 -6.478 -1.232 -1.274 -1.951 1.537 D 79 77 3 80 3 0 0 58 78 -6.505 -1.146 -0.897 IL 80 80 3 80 3 1 4 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - U - - - ML 81 80 3 83 3 1 5 58 78 -7.868 -0.022 -6.522 -0.976 -0.806 -1.703 1.385 D 82 80 3 83 3 0 0 57 77 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 3 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 84 83 3 86 3 1 4 57 77 -7.868 -0.022 -6.522 -1.310 -1.338 -2.034 1.564 D 85 83 3 86 3 0 0 56 76 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - U - - - ML 87 86 3 89 3 1 4 56 76 -7.868 -0.022 -6.522 -1.310 -1.338 -2.034 1.564 D 88 86 3 89 3 0 0 55 75 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - U - - - ML 90 89 3 92 3 1 3 55 75 -7.868 -0.022 -6.522 -0.417 -0.825 -0.888 1.102 D 91 89 3 92 3 0 0 54 73 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 93 92 3 95 3 1 3 54 74 -7.868 -0.022 -6.522 1.172 -0.654 -1.137 -0.609 D 94 92 3 95 3 0 0 53 72 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 96 95 3 98 3 1 2 53 73 -7.868 -0.022 -6.522 1.180 -1.151 -1.155 -0.259 D 97 95 3 98 3 0 0 52 71 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - A - - - ML 99 98 3 101 3 1 2 52 72 -8.265 -0.020 -6.583 1.180 -1.151 -1.155 -0.259 D 100 98 3 101 3 0 0 51 70 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 59 - A - - MR 102 101 3 104 5 1 1 51 71 -7.010 -0.075 -6.825 -5.059 -7.929 1.674 -2.178 -1.830 -1.702 D 103 101 3 104 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 23 58 U A - - MP 105 104 3 109 6 2 2 50 70 -9.054 -8.993 -0.022 -7.770 -8.049 -8.444 -3.919 -3.734 -3.786 -0.049 -2.789 -4.375 1.533 -3.464 -3.794 0.249 -4.180 -1.641 3.180 -4.079 -0.471 -2.643 ML 106 104 3 109 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 48 68 -7.145 -5.874 -1.344 -5.852 -0.986 -4.065 0.697 -0.611 -0.318 -0.118 D 108 104 3 109 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 24 57 C G - - MP 111 110 6 115 6 2 2 48 68 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 112 110 6 115 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 25 56 A U - - MP 117 116 6 121 6 2 2 46 66 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.636 -2.709 -3.665 3.221 -3.928 -4.977 0.362 -3.717 -3.564 1.246 -4.104 -0.211 -0.056 -4.190 -1.579 -2.509 ML 118 116 6 121 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 26 55 C G - - MP 123 122 6 127 6 2 2 44 64 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 124 122 6 127 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 27 54 U A - - MP 129 128 6 133 6 2 2 42 62 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.993 -3.811 -3.853 -0.121 -2.838 -4.435 1.486 -3.519 -3.860 0.164 -4.242 -1.716 3.225 -4.151 -0.519 -2.702 ML 130 128 6 133 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 28 53 C G - - MP 135 134 6 139 4 2 2 40 60 -4.574 -7.051 -0.108 -5.465 -4.357 -4.245 -4.079 -0.496 -2.841 -4.516 3.487 -3.631 -4.123 -0.226 -4.403 -2.191 0.692 -4.439 -0.543 -2.969 ML 136 134 6 139 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 41 60 -1.869 -2.553 -0.929 -5.038 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 141 140 6 143 3 1 1 37 56 -7.868 -0.022 -6.522 1.487 -1.731 -1.089 -1.234 D 142 140 6 143 3 0 0 36 55 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - c - - - ML 144 143 3 146 3 1 1 36 55 -7.868 -0.022 -6.522 -0.211 0.882 -1.328 -0.160 D 145 143 3 146 3 0 0 35 54 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 147 146 3 149 3 1 1 35 54 -5.367 -0.052 -6.522 1.674 -2.178 -1.830 -1.702 D 148 146 3 149 3 0 0 33 53 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 36 56 -1.503 -0.754 -4.203 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - G - - - ML 150 149 3 152 3 1 1 34 53 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 151 149 3 152 3 0 0 32 52 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - A - - - ML 153 152 3 155 3 1 1 32 52 -7.868 -0.022 -6.522 1.674 -2.178 -1.830 -1.702 D 154 152 3 155 3 0 0 31 50 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - G - - - ML 156 155 3 158 3 1 1 31 50 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 157 155 3 158 3 0 0 30 49 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - G - - - ML 159 158 3 161 3 1 1 30 49 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 160 158 3 161 3 0 0 29 48 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - G - - - ML 162 161 3 164 3 1 1 29 48 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 163 161 3 164 3 0 0 28 47 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 165 164 3 167 3 1 1 28 47 -7.868 -0.022 -6.522 -1.024 -0.895 -1.750 1.419 D 166 164 3 167 3 0 0 27 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 168 167 3 170 3 1 1 27 46 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 169 167 3 170 3 0 0 26 45 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - - - ML 171 170 3 173 3 1 1 26 45 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 172 170 3 173 3 0 0 25 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - - - ML 174 173 3 176 3 1 1 25 44 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 175 173 3 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - a - - - ML 177 176 3 179 3 1 1 24 42 -7.868 -0.066 -4.619 0.828 -0.408 -0.763 -0.182 D 178 176 3 179 3 0 0 23 41 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - c - - - ML 180 179 3 182 3 1 1 22 41 -7.824 -0.023 -6.478 -0.612 0.573 -1.384 0.561 D 181 179 3 182 3 0 0 21 40 -6.505 -1.146 -0.897 IL 182 182 3 182 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - A - - - ML 183 182 3 185 3 1 1 21 40 -7.868 -0.022 -6.522 1.674 -2.178 -1.830 -1.702 D 184 182 3 185 3 0 0 20 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - G - - - ML 186 185 3 188 3 1 1 20 39 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 187 185 3 188 3 0 0 19 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - - - ML 189 188 3 191 3 1 1 19 38 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 190 188 3 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - A - - - ML 192 191 3 194 3 1 1 18 36 -7.868 -0.022 -6.522 1.674 -2.178 -1.830 -1.702 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - G - - - ML 195 194 3 197 3 1 1 16 35 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - G - - - ML 198 197 3 200 3 1 1 15 33 -7.868 -0.022 -6.522 -1.375 -2.561 1.672 -1.947 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - A - - - ML 201 200 3 203 3 1 1 13 32 -7.868 -0.060 -4.766 1.192 -0.884 -0.910 -0.640 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - a - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 0.956 -0.638 -0.740 -0.288 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME XIST_intron ACC RF02266 DESC XIST 3' intron conserved motif LENG 68 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 09:20:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02266/CM NSEQ 20 EFFN 2.426758 CKSUM 2712976146 STATS LOCAL MSV -8.6157 0.71909 STATS LOCAL VITERBI -9.1673 0.71909 STATS LOCAL FORWARD -3.6678 0.71909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26527 1.75122 1.20944 1.40278 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 0.00000 * 1 3.04940 1.93920 2.78591 0.29153 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 2 2.70476 2.06827 2.44845 0.32811 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 3 2.43968 3.17863 0.19268 3.06993 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 4 0.59429 2.71358 1.19375 2.54258 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 5 2.96601 0.34708 2.73527 1.73234 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 6 3.24035 0.23013 3.01880 2.14082 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 7 2.53258 1.27207 2.29959 0.61619 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 8 2.97516 1.93482 2.75261 0.30009 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 9 2.84695 1.76638 2.61536 0.35970 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 10 2.84857 1.76208 2.61276 0.36089 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 11 2.93032 0.36138 2.70547 1.69792 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 12 2.02365 1.18153 1.75877 0.94478 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.06892 3.06051 3.92518 0.69966 0.68668 1.09861 0.40547 13 0.39225 2.29309 2.42206 2.00414 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.07797 3.92518 2.89550 1.46634 0.26236 1.09861 0.40547 14 2.57954 2.54869 3.09569 0.22219 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88900 3.88900 1.46634 0.26236 0.53897 0.87550 15 2.30677 2.07715 2.81986 0.33475 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 16 2.64845 2.60588 3.16740 0.20667 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 17 2.64845 2.60588 3.16740 0.20667 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 18 1.79772 2.09258 2.09140 0.53198 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 19 0.49197 1.87507 2.33750 1.97570 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 20 0.49495 2.31940 2.33860 1.63168 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 21 0.49495 2.31940 2.33860 1.63168 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.07290 3.92518 2.98442 1.46634 0.26236 1.09861 0.40547 22 2.94406 1.88406 2.69149 0.31801 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04159 3.89386 3.89386 1.46634 0.26236 0.57699 0.82460 23 3.23602 0.23058 3.01671 2.14006 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 24 0.32561 2.82146 1.86746 2.75079 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 25 3.23494 0.23070 3.01619 2.13987 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 26 3.01302 1.93709 2.76976 0.29564 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 27 3.23371 0.23083 3.01559 2.13965 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.07916 2.87591 3.92518 0.59580 0.80100 1.09861 0.40547 28 0.27640 2.83623 2.27669 2.52298 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 29 1.61769 0.66272 2.48992 1.59318 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 30 0.14821 3.28030 3.00037 2.98840 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06534 3.13467 3.92518 0.74590 0.64304 1.09861 0.40547 31 2.74240 3.62599 0.14127 3.20140 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 32 0.14821 3.28030 3.00037 2.98840 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 33 2.74240 3.62599 0.14127 3.20140 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 34 2.74240 3.62599 0.14127 3.20140 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 35 2.74240 3.62599 0.14127 3.20140 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 36 2.35177 2.15896 2.86462 0.31150 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 37 2.74240 3.62599 0.14127 3.20140 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 38 2.74240 3.62599 0.14127 3.20140 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 39 2.74240 3.62599 0.14127 3.20140 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 40 0.75676 1.67218 1.98611 1.58108 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07797 3.92518 2.89550 1.46634 0.26236 1.09861 0.40547 41 1.96390 0.90324 2.52030 0.98350 44 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88900 3.88900 1.46634 0.26236 0.53897 0.87550 42 0.14821 3.28030 3.00037 2.98840 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 43 2.74240 3.62599 0.14127 3.20140 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 44 2.74240 3.62599 0.14127 3.20140 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 45 0.14821 3.28030 3.00037 2.98840 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 46 2.74240 3.62599 0.14127 3.20140 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 47 2.74240 3.62599 0.14127 3.20140 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 48 0.48473 2.06146 2.12449 1.98503 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07290 3.92518 2.98442 1.46634 0.26236 1.09861 0.40547 49 0.66142 1.85994 1.97088 1.66671 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04159 3.89386 3.89386 1.46634 0.26236 0.57699 0.82460 50 2.41393 3.17903 0.20014 2.98979 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 51 0.33636 2.94954 1.77343 2.75635 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 52 2.40843 3.17144 0.20170 2.98072 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 53 2.94445 2.16213 2.62045 0.27507 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 54 2.38899 3.14475 0.20726 2.94894 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 55 0.36916 2.83690 1.72077 2.64292 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 56 0.14821 3.28030 3.00037 2.98840 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 57 1.13988 2.01056 0.95579 1.82190 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 58 2.12082 2.86744 0.28004 2.69609 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 59 0.44199 2.78107 1.50234 2.62191 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 60 0.43825 2.78731 1.50942 2.62814 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 61 0.33528 2.95481 1.77401 2.76270 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.09394 3.92518 2.66032 1.46634 0.26236 1.09861 0.40547 62 0.70121 2.47230 1.13174 2.33146 65 a - - > 1.38629 1.38629 1.38629 1.38629 0.04245 3.87369 3.87369 1.46634 0.26236 0.44760 1.01932 63 2.41957 3.18682 0.19857 2.99911 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 64 2.14430 2.89623 0.27166 2.72564 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 65 2.76196 1.77388 2.51432 0.37653 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 66 3.28963 0.24704 3.00684 2.02362 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 67 0.38138 2.48088 1.89462 2.48847 70 A - - > 1.38629 1.38629 1.38629 1.38629 0.04028 3.92518 3.92518 1.46634 0.26236 1.09861 0.40547 68 0.33156 2.97314 1.77599 2.78485 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.02034 3.90524 * 1.46634 0.26236 0.00000 * //