INFERNAL1/a [1.1.5 | Sep 2023] NAME MAT2A_F ACC RF02265 DESC MAT2A 3'UTR stem loop F STATES 202 NODES 45 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 07:35:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02265/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 1.634521 CKSUM 181234867 NULL 0.000 0.000 0.000 0.000 GA 51.00 TC 51.00 NC 50.90 EFP7GF -9.1172 0.71919 ECMLC 0.65494 -4.96512 3.71662 1600000 353675 0.003393 ECMGC 0.43344 -16.17418 -2.76419 1600000 133773 0.002990 ECMLI 0.64630 -3.24312 5.21290 1600000 283567 0.004232 ECMGI 0.51209 -10.13562 0.37176 1600000 86872 0.004604 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 82 101 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 IL 1 1 2 1 6 1 15 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 16 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 67 C G - - MP 3 2 3 7 6 2 20 82 101 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.316 -4.200 -4.045 -0.455 -2.816 -4.487 3.472 -3.602 -4.087 -0.179 -4.372 -2.145 0.720 -4.400 -0.518 -2.935 ML 4 2 3 7 6 1 13 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 13 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 8 78 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 15 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 15 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 66 a u - - MP 9 8 6 13 6 2 19 80 99 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -2.532 -2.248 -2.640 2.391 -2.696 -1.941 1.072 -2.950 -2.746 1.807 -3.245 -0.046 0.818 -2.742 -0.651 -1.779 ML 10 8 6 13 6 1 12 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 12 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 7 76 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 65 U A - - MP 15 14 6 19 6 2 18 78 97 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.475 -3.354 -3.502 0.212 -2.844 -4.238 1.392 -3.406 -3.515 0.508 -3.992 -1.372 3.096 -3.700 -0.577 -1.338 ML 16 14 6 19 6 1 12 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 11 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 7 74 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 14 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 64 G C - - MP 21 20 6 25 6 2 16 76 95 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.681 -2.655 -3.734 0.760 -3.986 -4.196 0.326 -4.045 -1.742 3.306 -4.072 -0.417 0.002 -3.658 -1.606 -2.714 ML 22 20 6 25 6 1 11 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 11 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 7 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 63 G C - - MP 27 26 6 31 6 2 15 74 93 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.281 -2.849 -4.351 0.542 -4.857 -4.550 -0.270 -4.653 -4.053 3.504 -4.427 -0.197 -0.588 -4.151 -2.282 -3.242 ML 28 26 6 31 6 1 11 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 10 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 6 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 62 a u - - MP 33 32 6 37 6 2 13 72 91 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.002 -1.076 -3.081 2.449 -3.374 -4.022 0.719 -3.362 -3.112 2.191 -3.613 -0.017 0.452 -3.260 -1.128 -2.065 ML 34 32 6 37 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 8 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 6 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 61 g c - - MP 39 38 6 43 4 2 11 70 89 -6.822 -7.029 -0.116 -4.045 -2.890 -2.082 -3.043 1.540 -3.308 -3.851 0.772 -3.268 -1.858 2.097 -3.410 1.901 0.489 -3.194 -1.074 -1.994 ML 40 38 6 43 4 1 9 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 7 69 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 5 68 88 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 10 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 10 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 45 44 6 47 3 1 10 67 86 -8.199 -0.021 -6.516 1.219 -1.379 -0.458 -0.836 D 46 44 6 47 3 0 5 66 85 -5.858 -0.595 -1.641 IL 47 47 3 47 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - A - - MR 48 47 3 50 5 1 10 66 85 -6.992 -0.042 -6.807 -7.020 -7.911 1.023 -0.784 -0.564 -0.492 D 49 47 3 50 5 0 3 65 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 7 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 59 a u - - MP 51 50 3 55 6 2 10 65 84 -9.061 -9.000 -0.034 -6.281 -8.056 -8.451 -2.953 -1.095 -3.033 2.358 -3.332 -3.950 0.738 -3.332 -3.078 2.217 -3.574 0.209 0.480 -3.193 -1.096 -2.029 ML 52 50 3 55 6 1 4 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 4 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 6 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 6 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 58 a u - - MP 57 56 6 61 6 2 9 63 82 -6.320 -8.988 -0.038 -7.764 -8.044 -8.439 -3.022 -1.516 -3.103 2.509 -3.416 -4.084 0.698 -3.370 -3.120 2.078 -3.627 0.369 0.432 -3.309 -1.159 -2.071 ML 58 56 6 61 6 1 4 62 81 -6.396 -6.742 -1.118 -1.151 -6.592 -4.122 0.658 -0.583 -0.287 -0.097 MR 59 56 6 61 6 1 3 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 63 82 -2.717 -2.980 -0.672 -4.635 -5.411 -5.072 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 5 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 57 G C - - MP 63 62 6 67 6 2 7 61 80 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 64 62 6 67 6 1 3 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 4 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 56 C G - - MP 69 68 6 73 4 2 5 59 78 -6.822 -7.029 -0.058 -5.443 -3.962 -3.964 -3.849 -0.316 -1.123 -4.411 3.404 -3.575 -3.891 -0.126 -4.255 -2.046 0.749 -4.124 -0.586 -2.799 ML 70 68 6 73 4 1 2 60 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 4 61 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 3 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 75 74 6 77 3 1 4 57 76 -8.246 -0.020 -6.564 -0.334 -0.790 -0.693 1.007 D 76 74 6 77 3 0 0 55 74 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - U - - MR 78 77 3 80 3 1 3 56 75 -8.246 -0.020 -6.564 -0.710 -0.919 -1.181 1.274 D 79 77 3 80 3 0 0 54 73 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - A - - MR 81 80 3 83 3 1 3 55 74 -8.246 -0.020 -6.564 1.383 -1.421 -1.324 -0.691 D 82 80 3 83 3 0 0 53 72 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - C - - MR 84 83 3 86 3 1 2 54 73 -8.246 -0.020 -6.564 -1.462 1.539 -2.274 -0.933 D 85 83 3 86 3 0 0 52 71 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - A - - MR 87 86 3 89 3 1 2 53 72 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 88 86 3 89 3 0 0 51 70 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - U - - MR 90 89 3 92 5 1 1 52 71 -6.992 -0.042 -6.807 -7.020 -7.911 -0.669 -0.900 -1.090 1.242 D 91 89 3 92 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 50 g u - - MP 93 92 3 97 6 2 3 51 70 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.471 -2.298 -3.625 1.219 -4.222 -4.950 0.143 -3.669 -3.329 1.553 -3.842 2.912 -0.218 -4.187 -1.797 -2.358 ML 94 92 3 97 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 49 A U - - MP 99 98 6 103 6 2 2 49 68 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.604 -2.685 -3.635 3.195 -3.882 -4.929 0.406 -3.689 -3.536 1.281 -4.074 -0.194 -0.012 -4.147 -1.536 -2.481 ML 100 98 6 103 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 48 C G - - MP 105 104 6 109 4 2 2 47 66 -6.822 -7.029 -0.058 -5.443 -4.316 -4.200 -4.045 -0.455 -2.816 -4.487 3.472 -3.602 -4.087 -0.179 -4.372 -2.145 0.720 -4.400 -0.518 -2.935 ML 106 104 6 109 4 1 1 47 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 111 110 6 113 3 1 1 44 63 -7.848 -0.022 -6.502 -0.983 -0.852 -1.708 1.397 D 112 110 6 113 3 0 0 43 62 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 114 113 3 116 3 1 1 43 61 -8.246 -0.020 -6.564 -1.273 -1.308 -1.995 1.552 D 115 113 3 116 3 0 0 41 60 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 47 - U - - MR 117 116 3 119 5 1 1 42 60 -6.992 -0.042 -6.807 -7.020 -7.911 -1.273 -1.308 -1.995 1.552 D 118 116 3 119 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 46 g u - - MP 120 119 3 124 6 2 2 41 59 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.471 -2.298 -3.625 1.219 -4.222 -4.950 0.143 -3.669 -3.329 1.553 -3.842 2.912 -0.218 -4.187 -1.797 -2.358 ML 121 119 3 124 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 45 G C - - MP 126 125 6 130 6 2 2 39 57 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 127 125 6 130 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 44 C G - - MP 132 131 6 136 6 2 2 37 55 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.316 -4.200 -4.045 -0.455 -2.816 -4.487 3.472 -3.602 -4.087 -0.179 -4.372 -2.145 0.720 -4.400 -0.518 -2.935 ML 133 131 6 136 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 43 u a - - MP 138 137 6 142 6 2 2 35 53 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.154 -3.159 -3.156 0.413 -1.044 -3.838 2.012 -2.995 -3.174 0.605 -3.632 -1.278 2.641 -3.366 -0.108 -2.120 ML 139 137 6 142 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 42 G C - - MP 144 143 6 148 6 2 2 33 51 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 145 143 6 148 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 41 G C - - MP 150 149 6 154 6 2 2 31 49 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 151 149 6 154 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 40 u g - - MP 156 155 6 160 4 2 2 29 47 -6.749 -7.994 -0.088 -4.448 -3.812 -3.774 -3.578 -0.137 -2.413 -4.038 1.972 -3.171 -3.624 0.107 -3.944 -1.841 1.064 -3.908 2.754 -2.508 ML 157 155 6 160 4 1 1 28 47 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 28 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 26 44 -12.737 -14.007 -2.036 -0.404 IL 160 160 5 160 4 1 1 28 47 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 39 - A - - MR 162 161 6 164 3 1 1 27 45 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 163 161 6 164 3 0 0 25 44 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 38 - A - - MR 165 164 3 167 3 1 1 26 44 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 166 164 3 167 3 0 0 24 43 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 37 - G - - MR 168 167 3 170 3 1 1 25 43 -8.246 -0.020 -6.564 -0.933 -2.221 1.554 -1.615 D 169 167 3 170 3 0 0 23 42 -6.390 -1.568 -0.620 IR 170 170 3 170 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 36 - A - - MR 171 170 3 173 3 1 1 24 42 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 172 170 3 173 3 0 0 22 41 -6.390 -1.568 -0.620 IR 173 173 3 173 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 35 - G - - MR 174 173 3 176 3 1 1 23 41 -8.246 -0.020 -6.564 -1.331 -2.510 1.659 -1.895 D 175 173 3 176 3 0 0 21 40 -6.390 -1.568 -0.620 IR 176 176 3 176 3 1 1 23 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 34 - A - - MR 177 176 3 179 5 1 1 22 40 -6.992 -0.042 -6.807 -7.020 -7.911 1.663 -2.137 -1.793 -1.658 D 178 176 3 179 5 0 0 20 39 -5.352 -0.707 -2.978 -4.409 -2.404 IR 179 179 3 179 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 27 33 G C - - MP 180 179 3 184 6 2 2 21 39 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 181 179 3 184 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 3 184 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 3 184 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 184 184 5 184 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 28 32 U A - - MP 186 185 6 190 4 2 2 19 37 -6.822 -7.029 -0.058 -5.443 -3.952 -3.769 -3.816 -0.082 -2.811 -4.402 1.512 -3.489 -3.824 0.211 -4.208 -1.675 3.201 -4.112 -0.493 -2.670 ML 187 185 6 190 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 189 185 6 190 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 190 190 5 190 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 191 191 6 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 29 - G - - - ML 192 191 6 194 3 1 1 15 33 -7.848 -0.022 -6.502 -0.935 -1.927 1.466 -1.145 D 193 191 6 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - G - - - ML 195 194 3 197 3 1 1 13 32 -7.848 -0.022 -6.502 -0.682 -1.377 1.324 -1.037 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 31 - U - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -1.273 -1.308 -1.995 1.552 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MAT2A_F ACC RF02265 DESC MAT2A 3'UTR stem loop F LENG 66 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 07:35:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02265/CM NSEQ 26 EFFN 2.580322 CKSUM 181234867 STATS LOCAL MSV -8.3435 0.71919 STATS LOCAL VITERBI -8.8488 0.71919 STATS LOCAL FORWARD -3.8364 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49874 1.47448 1.20266 1.39716 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 0.00000 * 1 3.35802 0.20954 3.12246 2.20558 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 2 0.85992 1.90470 1.29884 1.86377 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 3 2.88754 2.11851 2.64015 0.28405 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 4 2.30532 2.83897 0.25233 2.73648 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 5 2.47685 3.23765 0.18290 3.12611 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 6 0.77949 2.37907 1.07789 2.22182 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 7 1.55181 2.36183 0.53437 2.22703 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.08472 3.95476 2.77947 1.46634 0.26236 1.09861 0.40547 8 0.44844 2.57318 1.73585 2.21795 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04087 3.91090 3.91090 1.46634 0.26236 0.48086 0.96300 9 0.85521 2.33513 1.01021 2.17274 9 a - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 10 0.77427 2.38345 1.08469 2.21897 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.07435 2.94711 3.95476 0.61789 0.77453 1.09861 0.40547 11 2.63862 3.32994 0.15743 3.25943 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 12 3.15325 0.23205 2.97131 2.17907 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 13 1.74677 2.08598 1.93347 0.58549 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 14 1.97081 3.01222 0.28108 2.87346 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 15 0.29841 2.91093 1.93128 2.83681 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 16 3.31179 0.21391 3.09998 2.19749 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 17 2.38576 2.16065 2.89981 0.30422 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 18 2.71581 2.66189 3.23729 0.19266 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 19 1.97140 3.01352 0.28076 2.87513 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 20 2.65863 3.35475 0.15325 3.29351 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 21 3.31307 0.21379 3.10061 2.19771 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 22 2.44103 1.25905 2.23702 0.64965 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 23 2.65740 3.35322 0.15351 3.29139 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 24 2.65684 3.35253 0.15362 3.29044 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 25 3.06117 1.48549 2.86771 0.40056 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 26 2.65469 3.34986 0.15407 3.28676 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 27 3.09677 1.99938 2.86168 0.27153 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 28 2.39368 3.11647 0.24650 2.49062 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 29 2.15785 2.54454 0.32848 2.45460 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 30 2.71581 2.66189 3.23729 0.19266 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 31 0.30717 3.05201 1.83671 2.84953 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 32 3.50675 0.18086 3.19836 2.35781 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 33 0.13725 3.35163 3.06481 3.06715 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 34 2.81497 3.70806 0.13005 3.28307 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 35 0.13725 3.35163 3.06481 3.06715 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 36 2.37299 3.39381 0.19506 2.98709 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 37 0.13725 3.35163 3.06481 3.06715 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 38 0.13725 3.35163 3.06481 3.06715 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 39 2.14710 3.02767 0.25531 2.81220 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 40 3.48754 0.18240 3.18972 2.35420 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 41 3.48995 0.18220 3.19081 2.35466 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 42 0.68519 2.40537 1.21314 2.22091 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 43 2.47824 3.27035 0.18400 3.07515 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 44 3.50246 0.18120 3.19644 2.35701 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 45 3.09556 2.00240 2.81511 0.27464 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 46 2.71581 2.66189 3.23729 0.19266 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 47 2.47793 3.26992 0.18408 3.07464 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 48 3.06922 2.23945 2.72433 0.24662 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 49 3.09456 2.00233 2.81468 0.27475 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 50 2.10710 2.22882 2.32020 0.39675 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 51 0.13725 3.35163 3.06481 3.06715 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 52 2.98255 0.17592 3.55866 2.49895 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 53 0.32816 2.60892 2.56078 2.04878 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 54 2.14820 2.25036 2.40867 0.37395 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 55 2.19184 3.14274 0.23212 2.95122 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 56 3.48692 0.18245 3.18944 2.35409 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.06673 3.95476 3.09250 1.46634 0.26236 1.09861 0.40547 57 2.46009 1.27610 2.19448 0.64620 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04015 3.92818 3.92818 1.46634 0.26236 0.61216 0.78128 58 2.41088 1.11943 2.14213 0.76273 59 u - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 59 0.59508 1.99131 1.83226 1.88444 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 60 2.29914 1.32301 2.16979 0.65562 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 61 2.45284 1.14521 2.18407 0.72730 62 u - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 62 3.33788 0.23603 3.06618 2.05472 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 63 2.64561 0.31885 2.66140 2.02339 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 64 0.33785 2.81943 1.94999 2.46763 65 A - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 65 2.09781 1.43794 1.82074 0.73824 66 u - - > 1.38629 1.38629 1.38629 1.38629 0.03908 3.95476 3.95476 1.46634 0.26236 1.09861 0.40547 66 2.49385 3.29258 0.18000 3.10150 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01973 3.93541 * 1.46634 0.26236 0.00000 * //