INFERNAL1/a [1.1.4 | Dec 2020] NAME MAT2A_F ACC RF02265 DESC MAT2A 3'UTR stem loop F STATES 202 NODES 45 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:55:35 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 1.634521 CKSUM 181234867 NULL 0.000 0.000 0.000 0.000 GA 51.00 TC 52.00 NC 50.20 EFP7GF -9.1161 0.71918 ECMLC 0.65555 -4.95874 3.71995 1600000 354823 0.003382 ECMGC 0.43606 -16.04516 -2.72512 1600000 133220 0.003003 ECMLI 0.64808 -3.21549 5.21825 1600000 283739 0.004229 ECMGI 0.51472 -10.05486 0.39684 1600000 86783 0.004609 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 82 101 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 IL 1 1 2 1 6 1 15 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 16 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 67 C G - - MP 3 2 3 7 6 2 20 82 101 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.316 -4.200 -4.045 -0.455 -2.816 -4.487 3.472 -3.602 -4.087 -0.179 -4.372 -2.145 0.720 -4.400 -0.518 -2.935 ML 4 2 3 7 6 1 13 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 13 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 8 78 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 15 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 15 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 66 a u - - MP 9 8 6 13 6 2 19 80 99 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -2.516 -2.228 -2.626 2.355 -2.683 -1.942 1.083 -2.938 -2.730 1.825 -3.228 0.004 0.830 -2.726 -0.639 -1.764 ML 10 8 6 13 6 1 12 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 12 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 7 76 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 65 U A - - MP 15 14 6 19 6 2 18 78 97 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.479 -3.358 -3.505 0.209 -2.846 -4.241 1.392 -3.409 -3.519 0.505 -3.995 -1.374 3.098 -3.704 -0.578 -1.349 ML 16 14 6 19 6 1 12 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 11 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 7 74 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 64 G C - - MP 21 20 6 25 6 2 16 76 95 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.686 -2.657 -3.739 0.759 -3.992 -4.199 0.323 -4.050 -1.757 3.308 -4.075 -0.418 -0.001 -3.662 -1.610 -2.718 ML 22 20 6 25 6 1 11 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 11 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 7 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 63 G C - - MP 27 26 6 31 6 2 15 74 93 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.284 -2.850 -4.354 0.540 -4.859 -4.550 -0.272 -4.655 -4.054 3.505 -4.428 -0.202 -0.591 -4.153 -2.284 -3.244 ML 28 26 6 31 6 1 11 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 10 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 6 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 62 a u - - MP 33 32 6 37 6 2 13 72 91 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.002 -1.092 -3.080 2.423 -3.374 -4.014 0.724 -3.364 -3.114 2.220 -3.613 -0.016 0.456 -3.254 -1.125 -2.064 ML 34 32 6 37 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 8 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 6 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 61 g c - - MP 39 38 6 43 4 2 11 70 89 -6.822 -7.029 -0.115 -4.058 -2.895 -2.082 -3.048 1.537 -3.316 -3.858 0.767 -3.272 -1.867 2.093 -3.413 1.913 0.484 -3.201 -1.080 -1.997 ML 40 38 6 43 4 1 9 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 7 69 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 5 68 88 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 10 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 10 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 45 44 6 47 3 1 10 67 87 -8.199 -0.021 -6.517 1.224 -1.383 -0.469 -0.841 D 46 44 6 47 3 0 5 66 85 -5.855 -0.596 -1.638 IL 47 47 3 47 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - A - - MR 48 47 3 50 5 1 10 66 85 -6.992 -0.042 -6.807 -7.020 -7.911 1.029 -0.791 -0.571 -0.497 D 49 47 3 50 5 0 3 65 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 7 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 59 a u - - MP 51 50 3 55 6 2 10 65 84 -9.061 -9.000 -0.034 -6.294 -8.056 -8.451 -2.956 -1.111 -3.034 2.335 -3.334 -3.946 0.742 -3.336 -3.082 2.242 -3.575 0.204 0.482 -3.190 -1.095 -2.031 ML 52 50 3 55 6 1 4 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 4 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 6 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 6 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 58 a u - - MP 57 56 6 61 6 2 9 63 82 -6.066 -8.988 -0.041 -7.765 -8.044 -8.439 -3.026 -1.524 -3.107 2.518 -3.421 -4.090 0.694 -3.373 -3.123 2.073 -3.631 0.365 0.429 -3.314 -1.163 -2.074 ML 58 56 6 61 6 1 4 62 81 -6.394 -6.741 -1.120 -1.149 -6.590 -4.120 0.655 -0.581 -0.285 -0.095 MR 59 56 6 61 6 1 3 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 63 82 -2.747 -3.009 -0.655 -4.665 -5.441 -5.101 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 5 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 57 G C - - MP 63 62 6 67 6 2 7 61 80 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 64 62 6 67 6 1 3 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 4 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 56 C G - - MP 69 68 6 73 4 2 5 59 78 -6.822 -7.029 -0.058 -5.443 -3.967 -3.968 -3.853 -0.320 -1.138 -4.414 3.405 -3.577 -3.895 -0.128 -4.258 -2.050 0.747 -4.128 -0.588 -2.802 ML 70 68 6 73 4 1 2 60 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 4 61 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 3 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 75 74 6 77 3 1 4 57 76 -8.246 -0.020 -6.564 -0.339 -0.791 -0.701 1.012 D 76 74 6 77 3 0 0 55 74 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - U - - MR 78 77 3 80 3 1 3 56 75 -8.246 -0.020 -6.564 -0.677 -0.903 -1.109 1.249 D 79 77 3 80 3 0 0 54 73 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - A - - MR 81 80 3 83 3 1 3 55 74 -8.246 -0.020 -6.564 1.386 -1.427 -1.328 -0.699 D 82 80 3 83 3 0 0 53 72 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - C - - MR 84 83 3 86 3 1 2 54 73 -8.246 -0.020 -6.564 -1.462 1.539 -2.274 -0.933 D 85 83 3 86 3 0 0 52 71 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - A - - MR 87 86 3 89 3 1 2 53 72 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 88 86 3 89 3 0 0 51 70 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - U - - MR 90 89 3 92 5 1 1 52 71 -6.992 -0.042 -6.807 -7.020 -7.911 -0.672 -0.901 -1.096 1.244 D 91 89 3 92 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 50 g u - - MP 93 92 3 97 6 2 3 51 70 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.471 -2.298 -3.625 1.219 -4.222 -4.950 0.143 -3.669 -3.329 1.553 -3.842 2.912 -0.218 -4.187 -1.797 -2.358 ML 94 92 3 97 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 49 A U - - MP 99 98 6 103 6 2 2 49 68 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.604 -2.685 -3.635 3.195 -3.882 -4.929 0.406 -3.689 -3.536 1.281 -4.074 -0.194 -0.012 -4.147 -1.536 -2.481 ML 100 98 6 103 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 48 C G - - MP 105 104 6 109 4 2 2 47 66 -6.822 -7.029 -0.058 -5.443 -4.316 -4.200 -4.045 -0.455 -2.816 -4.487 3.472 -3.602 -4.087 -0.179 -4.372 -2.145 0.720 -4.400 -0.518 -2.935 ML 106 104 6 109 4 1 1 47 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 111 110 6 113 3 1 1 44 63 -7.848 -0.022 -6.502 -0.985 -0.856 -1.710 1.399 D 112 110 6 113 3 0 0 43 62 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 114 113 3 116 3 1 1 43 61 -8.246 -0.020 -6.564 -1.273 -1.308 -1.995 1.552 D 115 113 3 116 3 0 0 41 60 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 47 - U - - MR 117 116 3 119 5 1 1 42 60 -6.992 -0.042 -6.807 -7.020 -7.911 -1.273 -1.308 -1.995 1.552 D 118 116 3 119 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 46 g u - - MP 120 119 3 124 6 2 2 41 59 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.471 -2.298 -3.625 1.219 -4.222 -4.950 0.143 -3.669 -3.329 1.553 -3.842 2.912 -0.218 -4.187 -1.797 -2.358 ML 121 119 3 124 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 45 G C - - MP 126 125 6 130 6 2 2 39 57 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 127 125 6 130 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 44 C G - - MP 132 131 6 136 6 2 2 37 55 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.316 -4.200 -4.045 -0.455 -2.816 -4.487 3.472 -3.602 -4.087 -0.179 -4.372 -2.145 0.720 -4.400 -0.518 -2.935 ML 133 131 6 136 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 43 u a - - MP 138 137 6 142 6 2 2 35 53 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -3.159 -3.164 -3.160 0.409 -1.057 -3.841 2.009 -2.998 -3.178 0.602 -3.636 -1.281 2.647 -3.370 -0.110 -2.123 ML 139 137 6 142 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 42 G C - - MP 144 143 6 148 6 2 2 33 51 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 145 143 6 148 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 41 G C - - MP 150 149 6 154 6 2 2 31 49 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 151 149 6 154 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 40 u g - - MP 156 155 6 160 4 2 2 29 47 -6.749 -7.994 -0.088 -4.448 -3.813 -3.774 -3.579 -0.137 -2.414 -4.038 1.970 -3.171 -3.625 0.107 -3.944 -1.841 1.064 -3.908 2.755 -2.508 ML 157 155 6 160 4 1 1 28 47 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 28 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 26 44 -12.737 -14.007 -2.036 -0.404 IL 160 160 5 160 4 1 1 28 47 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 39 - A - - MR 162 161 6 164 3 1 1 27 45 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 163 161 6 164 3 0 0 25 44 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 38 - A - - MR 165 164 3 167 3 1 1 26 44 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 166 164 3 167 3 0 0 24 43 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 37 - G - - MR 168 167 3 170 3 1 1 25 43 -8.246 -0.020 -6.564 -0.938 -2.224 1.555 -1.618 D 169 167 3 170 3 0 0 23 42 -6.390 -1.568 -0.620 IR 170 170 3 170 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 36 - A - - MR 171 170 3 173 3 1 1 24 42 -8.246 -0.020 -6.564 1.663 -2.137 -1.793 -1.658 D 172 170 3 173 3 0 0 22 41 -6.390 -1.568 -0.620 IR 173 173 3 173 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 35 - G - - MR 174 173 3 176 3 1 1 23 41 -8.246 -0.020 -6.564 -1.331 -2.510 1.659 -1.895 D 175 173 3 176 3 0 0 21 40 -6.390 -1.568 -0.620 IR 176 176 3 176 3 1 1 23 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 34 - A - - MR 177 176 3 179 5 1 1 22 40 -6.992 -0.042 -6.807 -7.020 -7.911 1.663 -2.137 -1.793 -1.658 D 178 176 3 179 5 0 0 20 39 -5.352 -0.707 -2.978 -4.409 -2.404 IR 179 179 3 179 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 27 33 G C - - MP 180 179 3 184 6 2 2 21 39 -9.061 -9.000 -0.022 -7.776 -8.056 -8.451 -4.517 -2.988 -4.598 0.347 -4.916 -4.604 -0.336 -4.823 -4.177 3.579 -4.531 -0.679 -0.728 -4.320 -2.361 -3.479 ML 181 179 3 184 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 3 184 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 3 184 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 184 184 5 184 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 28 32 U A - - MP 186 185 6 190 4 2 2 19 37 -6.822 -7.029 -0.058 -5.443 -3.952 -3.769 -3.816 -0.082 -2.811 -4.402 1.512 -3.489 -3.824 0.211 -4.208 -1.675 3.201 -4.112 -0.493 -2.670 ML 187 185 6 190 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 189 185 6 190 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 190 190 5 190 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 191 191 6 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 29 - G - - - ML 192 191 6 194 3 1 1 15 33 -7.848 -0.022 -6.502 -0.876 -1.840 1.426 -1.031 D 193 191 6 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - G - - - ML 195 194 3 197 3 1 1 13 32 -7.848 -0.022 -6.502 -0.686 -1.385 1.328 -1.043 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 31 - U - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -1.273 -1.308 -1.995 1.552 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME MAT2A_F ACC RF02265 DESC MAT2A 3'UTR stem loop F LENG 66 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:55:35 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 26 EFFN 2.586670 CKSUM 181234867 STATS LOCAL MSV -8.3491 0.71918 STATS LOCAL VITERBI -8.8508 0.71918 STATS LOCAL FORWARD -3.8368 0.71918 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49951 1.47337 1.20211 1.39818 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 0.00000 * 1 3.36114 0.20890 3.12588 2.20795 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 2 0.89193 1.88947 1.26898 1.84602 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 3 2.89491 2.12393 2.64763 0.28194 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 4 2.30821 2.84396 0.25116 2.74156 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 5 2.48032 3.24224 0.18209 3.13085 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 6 0.79904 2.37306 1.05542 2.21644 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 7 1.55472 2.36940 0.53071 2.23471 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.08407 3.95597 2.78885 1.46634 0.26236 1.09861 0.40547 8 0.44410 2.57875 1.74520 2.22451 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04079 3.91270 3.91270 1.46634 0.26236 0.48398 0.95796 9 0.87266 2.33145 0.99208 2.16980 9 a - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 10 0.76741 2.38975 1.09041 2.22512 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.08250 2.81258 3.95597 0.54848 0.86234 1.09861 0.40547 11 2.64015 3.33239 0.15710 3.26170 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 12 3.15990 0.23040 2.97827 2.18505 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 13 1.75251 2.08878 1.94151 0.58100 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 14 1.97218 3.01514 0.28043 2.87613 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 15 0.29736 2.91457 1.93389 2.84029 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 16 3.31480 0.21327 3.10333 2.19983 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 17 2.39003 2.16589 2.90412 0.30255 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 18 2.71855 2.66417 3.24012 0.19211 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 19 1.97277 3.01644 0.28012 2.87781 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 20 2.66051 3.35767 0.15285 3.29640 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 21 3.31608 0.21315 3.10396 2.20006 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 22 2.44565 1.26324 2.24142 0.64572 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 23 2.65927 3.35612 0.15311 3.29427 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 24 2.65871 3.35542 0.15323 3.29331 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 25 3.06416 1.48825 2.87107 0.39913 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 26 2.65658 3.35277 0.15367 3.28966 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 27 3.10018 2.00196 2.86544 0.27059 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 28 2.33623 3.03678 0.27036 2.38362 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 29 2.16348 2.55321 0.32576 2.46196 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 30 2.71855 2.66417 3.24012 0.19211 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 31 0.30610 3.05585 1.83929 2.85291 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 32 3.50955 0.18041 3.20136 2.35965 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 33 0.13682 3.35452 3.06742 3.07035 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 34 2.81790 3.71136 0.12961 3.28634 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 35 0.13682 3.35452 3.06742 3.07035 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 36 2.37965 3.39999 0.19368 2.99322 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 37 0.13682 3.35452 3.06742 3.07035 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 38 0.13682 3.35452 3.06742 3.07035 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 39 2.14919 3.03110 0.25456 2.81507 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 40 3.49025 0.18194 3.19267 2.35602 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 41 3.49267 0.18175 3.19376 2.35648 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 42 0.68149 2.40976 1.21648 2.22538 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 43 2.48061 3.27371 0.18344 3.07820 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 44 3.50523 0.18075 3.19942 2.35884 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 45 3.09820 2.00480 2.81798 0.27384 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 46 2.71855 2.66417 3.24012 0.19211 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 47 2.48030 3.27327 0.18352 3.07769 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 48 3.07268 2.24241 2.72794 0.24571 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 49 3.09720 2.00473 2.81755 0.27394 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 50 2.11114 2.23146 2.32644 0.39469 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 51 0.13682 3.35452 3.06742 3.07035 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 52 2.98606 0.17531 3.56213 2.50179 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 53 0.32525 2.61585 2.56632 2.05783 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 54 2.11705 2.23451 2.33924 0.39131 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 55 2.20001 3.14970 0.23015 2.95814 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 56 3.48871 0.18207 3.19197 2.35573 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.06632 3.95597 3.10054 1.46634 0.26236 1.09861 0.40547 57 2.46614 1.28269 2.20081 0.64039 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04009 3.92975 3.92975 1.46634 0.26236 0.61529 0.77758 58 2.40853 1.09957 2.13861 0.77823 59 u - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 59 0.59002 1.99788 1.83864 1.89027 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 60 2.30637 1.32833 2.17736 0.64986 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 61 2.44809 1.12282 2.17824 0.74456 62 u - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 62 3.34237 0.23483 3.07089 2.05913 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 63 2.65257 0.31720 2.66647 2.02612 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 64 0.33514 2.82701 1.95544 2.47610 65 A - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 65 2.08004 1.41643 1.80379 0.75967 66 u - - > 1.38629 1.38629 1.38629 1.38629 0.03903 3.95597 3.95597 1.46634 0.26236 1.09861 0.40547 66 2.49626 3.29601 0.17944 3.10462 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01971 3.93665 * 1.46634 0.26236 0.00000 * //