INFERNAL1/a [1.1.5 | Sep 2023] NAME MAT2A_C ACC RF02262 DESC MAT2A 3'UTR stem loop C STATES 160 NODES 36 CLEN 52 W 66 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 15:45:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF02262/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 18 EFFN 2.843262 CKSUM 1832227717 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 48.00 NC 46.70 EFP7GF -11.3426 0.71954 ECMLC 0.67741 -5.00782 3.54909 1600000 394996 0.003038 ECMGC 0.44166 -16.27762 -2.41084 1600000 182744 0.002189 ECMLI 0.63260 -4.39600 4.47544 1600000 328444 0.003654 ECMGI 0.49545 -11.87044 -0.05705 1600000 139310 0.002871 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 66 85 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 IL 1 1 2 1 6 1 3 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 3 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 54 G C - - MP 3 2 3 7 6 2 7 66 85 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -4.600 -3.027 -4.643 0.367 -5.490 -4.780 -0.744 -5.049 -4.357 3.535 -4.702 0.449 -1.023 -4.385 -2.764 -3.532 ML 4 2 3 7 6 1 2 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 2 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 53 C G - - MP 9 8 6 13 6 2 6 64 83 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -4.999 -5.020 -4.736 -1.268 -1.285 -5.164 3.681 -4.352 -4.814 -1.115 -5.056 -3.065 0.006 -5.103 -1.269 -3.676 ML 10 8 6 13 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 52 U A - - MP 15 14 6 19 6 2 6 62 81 -9.244 -9.183 -0.076 -7.959 -4.604 -8.634 -3.630 -3.327 -3.668 0.355 -3.042 -4.512 1.310 -3.534 -3.625 0.593 -4.125 -0.168 3.061 -3.916 -0.714 -2.525 ML 16 14 6 19 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 51 u g - - MP 21 20 6 25 6 2 6 60 79 -6.065 -9.127 -0.039 -7.904 -8.184 -8.579 -4.101 -4.115 -3.855 -0.447 -2.646 -4.300 1.644 -3.420 -3.899 -0.263 -4.214 -2.209 1.620 -4.189 2.849 -2.775 ML 22 20 6 25 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 59 78 -7.553 -6.282 -0.880 -6.260 -1.394 -4.474 0.072 -0.202 0.095 0.016 D 24 20 6 25 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 60 79 -2.065 -3.192 -0.809 -4.847 -5.624 -5.284 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 7 50 U A - - MP 27 26 6 31 6 2 6 58 77 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -3.910 -3.879 -3.958 -0.391 -3.328 -4.705 0.823 -3.889 -1.572 -0.240 -4.458 -1.989 3.449 -4.163 -1.098 -2.863 ML 28 26 6 31 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 8 49 C G - - MP 33 32 6 37 6 2 5 56 75 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -5.152 -5.167 -4.856 -1.392 -1.762 -5.259 3.716 -4.455 -4.944 -1.233 -5.158 -3.196 -0.090 -5.241 -1.356 -3.795 ML 34 32 6 37 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 9 48 U A - - MP 39 38 6 43 6 2 5 54 73 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -4.979 -4.816 -4.725 -1.064 -3.514 -5.214 0.823 -4.259 -4.725 -0.905 -5.058 -2.691 3.604 -5.093 -1.172 -3.453 ML 40 38 6 43 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 10 47 G C - - MP 45 44 6 49 6 2 4 52 71 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -4.658 -1.061 -4.698 0.278 -5.473 -4.685 -0.764 -5.153 -4.405 3.599 -4.719 -0.770 -1.047 -4.334 -2.774 -3.631 ML 46 44 6 49 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 11 46 A U - - MP 51 50 6 55 4 2 2 50 69 -7.281 -7.488 -0.042 -5.902 -4.383 -3.278 -4.342 3.611 -4.999 -6.134 -0.658 -4.342 -4.228 0.437 -4.804 -0.670 -1.072 -5.210 -2.596 -3.154 ML 52 50 6 55 4 1 1 51 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 51 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 50 69 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - A - - - ML 57 56 6 59 3 1 1 48 66 -8.276 -0.017 -6.930 1.395 -1.866 -0.497 -1.369 D 58 56 6 59 3 0 0 47 65 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 13 - C - - - ML 60 59 3 62 3 1 1 46 65 -8.648 -0.015 -6.965 -0.843 1.080 -0.875 -0.353 D 61 59 3 62 3 0 0 45 64 -5.620 -0.734 -1.403 IL 62 62 3 62 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 45 - U - - MR 63 62 3 65 3 1 1 45 64 -8.648 -0.015 -6.965 -2.077 -1.973 -2.835 1.752 D 64 62 3 65 3 0 0 44 63 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 44 - C - - MR 66 65 3 68 3 1 1 44 63 -8.648 -0.015 -6.965 -1.179 1.332 -1.657 -0.469 D 67 65 3 68 3 0 0 43 62 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 43 - C - - MR 69 68 3 71 3 1 1 43 62 -8.648 -0.015 -6.965 -1.273 1.234 -2.128 0.009 D 70 68 3 71 3 0 0 42 61 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 42 - U - - MR 72 71 3 74 5 1 1 42 61 -7.369 -0.032 -7.184 -7.396 -8.288 -1.178 -0.366 -1.937 1.334 D 73 71 3 74 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 41 A U - - MP 75 74 3 79 6 2 2 41 60 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -3.511 -2.809 -3.573 3.194 -3.967 -4.751 0.042 -3.788 -3.582 1.109 -4.128 0.224 -0.205 -3.930 -1.771 -0.641 ML 76 74 3 79 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 38 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 40 g c - - MP 81 80 6 85 6 2 2 39 58 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -3.008 -2.347 -3.036 1.126 -3.261 -3.769 0.889 -1.437 -3.219 2.770 -3.651 0.455 0.603 -3.053 -0.467 -2.088 ML 82 80 6 85 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 36 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 39 C G - - MP 87 86 6 91 6 2 2 37 56 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -3.374 -3.412 -3.386 0.042 -2.641 -1.207 3.123 -3.269 -3.416 0.185 -3.863 -1.631 0.927 -3.598 0.563 -2.402 ML 88 86 6 91 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 34 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 38 U A - - MP 93 92 6 97 6 2 2 35 54 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -4.979 -4.816 -4.725 -1.064 -3.514 -5.214 0.823 -4.259 -4.725 -0.905 -5.058 -2.691 3.604 -5.093 -1.172 -3.453 ML 94 92 6 97 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 32 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 37 G C - - MP 99 98 6 103 6 2 2 33 52 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -4.288 -2.908 -4.274 0.483 -4.864 -4.444 -0.285 -4.760 -4.212 3.505 -4.521 -0.653 -0.588 -1.460 -2.263 -3.260 ML 100 98 6 103 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 36 G C - - MP 105 104 6 109 6 2 2 31 50 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -4.650 -3.052 -4.700 0.328 -5.543 -4.789 -0.789 -5.103 -4.384 3.558 -4.725 0.340 -1.069 -4.416 -2.813 -3.588 ML 106 104 6 109 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 35 U A - - MP 111 110 6 115 4 2 2 29 48 -7.173 -8.418 -0.065 -4.872 -4.587 -4.552 -4.391 -0.807 -3.224 -4.894 1.115 -3.974 -4.408 -0.607 -4.762 -2.553 3.460 -4.692 -0.216 -3.189 ML 112 110 6 115 4 1 1 29 48 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 28 47 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 26 45 -12.737 -14.007 -2.036 -0.404 IL 115 115 5 115 4 1 1 29 48 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 34 - A - - MR 117 116 6 119 3 1 1 27 46 -8.648 -0.015 -6.965 1.825 -3.003 -2.573 -2.610 D 118 116 6 119 3 0 0 26 44 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 33 - A - - MR 120 119 3 122 3 1 1 26 45 -8.648 -0.015 -6.965 1.825 -3.003 -2.573 -2.610 D 121 119 3 122 3 0 0 25 43 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 32 - G - - MR 123 122 3 125 3 1 1 25 44 -8.648 -0.015 -6.965 -1.453 -2.461 1.628 -1.463 D 124 122 3 125 3 0 0 24 42 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 31 - A - - MR 126 125 3 128 3 1 1 24 43 -8.648 -0.015 -6.965 1.825 -3.003 -2.573 -2.610 D 127 125 3 128 3 0 0 23 41 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 30 - G - - MR 129 128 3 131 3 1 1 23 42 -8.648 -0.015 -6.965 -2.229 -3.538 1.835 -2.923 D 130 128 3 131 3 0 0 22 41 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 29 - A - - MR 132 131 3 134 5 1 1 22 41 -7.369 -0.032 -7.184 -7.396 -8.288 1.825 -3.003 -2.573 -2.610 D 133 131 3 134 5 0 0 21 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 28 G C - - MP 135 134 3 139 6 2 2 21 40 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -5.350 -3.389 -5.532 -0.221 -6.082 -4.922 -1.295 -5.799 -4.702 3.755 -5.000 -1.119 -1.666 -4.860 -3.369 -4.400 ML 136 134 3 139 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 27 U A - - MP 141 140 6 145 4 2 2 19 38 -7.281 -7.488 -0.042 -5.902 -4.979 -4.816 -4.725 -1.064 -3.514 -5.214 0.823 -4.259 -4.725 -0.905 -5.058 -2.691 3.604 -5.093 -1.172 -3.453 ML 142 140 6 145 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 23 - A - - - ML 147 146 6 149 3 1 1 16 35 -8.276 -0.017 -6.930 1.825 -3.003 -2.573 -2.610 D 148 146 6 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 24 - G - - - ML 150 149 3 152 3 1 1 15 33 -8.276 -0.017 -6.930 -1.086 -2.722 1.656 -2.152 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 25 - C - - - ML 153 152 3 155 3 1 1 13 31 -8.276 -0.017 -6.930 -0.501 1.117 -1.744 -0.276 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - U - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -2.077 -1.973 -2.835 1.752 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MAT2A_C ACC RF02262 DESC MAT2A 3'UTR stem loop C LENG 52 MAXL 128 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 15:45:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF02262/CM NSEQ 18 EFFN 4.029785 CKSUM 1832227717 STATS LOCAL MSV -7.4387 0.71954 STATS LOCAL VITERBI -8.0652 0.71954 STATS LOCAL FORWARD -3.9121 0.71954 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30981 1.48260 1.37213 1.38823 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 0.00000 * 1 2.59445 3.47321 0.15200 3.34375 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 2 3.88252 0.11670 3.70603 2.73379 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 3 2.55661 1.99509 1.98336 0.43259 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.12830 4.20535 2.24905 1.46634 0.26236 1.09861 0.40547 4 3.21523 1.75051 3.03186 0.30389 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.06863 2.99714 4.11040 0.92800 0.50309 0.24902 1.51217 5 3.24240 2.43990 2.70550 0.21453 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 6 3.95738 0.10402 3.81287 2.85434 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 7 3.79966 2.57026 3.64082 0.13367 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 8 2.33115 3.50136 0.17607 3.37836 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 9 0.15319 3.62557 2.45865 3.51147 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 10 0.35562 2.95133 1.73930 2.64023 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 11 2.19638 0.52949 2.05057 1.76475 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 12 0.38209 3.07996 1.73052 2.36009 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 13 1.87278 2.03435 0.55317 1.96315 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 14 2.77038 0.43852 2.58908 1.52656 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 15 3.81325 2.57177 3.64824 0.13298 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 16 2.53172 3.20580 0.21051 2.66245 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 17 2.60744 3.47968 0.15056 3.34581 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 18 3.56039 2.26407 3.37498 0.18221 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 19 3.02839 3.89180 0.09476 3.83462 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 20 3.81552 2.57203 3.64948 0.13286 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 21 0.07637 3.90607 3.57150 3.67712 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 22 2.31951 3.60860 0.18032 3.22933 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 23 1.83963 0.51877 2.83270 1.67656 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 24 3.25141 3.11173 3.78760 0.11193 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 25 0.15040 3.85320 2.40777 3.56094 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 26 4.02974 0.11300 3.76083 2.72106 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 27 0.07637 3.90607 3.57150 3.67712 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 28 3.35200 4.30372 0.07210 3.86196 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 29 0.07637 3.90607 3.57150 3.67712 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 30 2.70180 3.42197 0.19283 2.58167 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 31 0.07637 3.90607 3.57150 3.67712 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 32 0.07637 3.90607 3.57150 3.67712 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 33 0.23486 3.53905 1.93739 3.31871 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 34 3.55348 0.24241 3.30588 1.89728 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 35 3.32431 0.21041 3.03221 2.24868 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 36 0.15101 3.84548 2.40638 3.55287 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 37 2.13933 2.34098 0.34495 2.55394 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 38 2.34849 0.70471 1.90972 1.33899 40 c - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 39 3.11782 2.23457 2.88415 0.23218 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 40 2.46723 1.67148 3.00079 0.38940 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 41 2.54400 0.44391 3.16646 1.43644 43 C - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 42 2.48235 0.36424 2.71400 1.86136 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 43 3.25141 3.11173 3.78760 0.11193 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 44 3.70405 2.82377 3.42306 0.12400 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 45 3.55676 0.17141 3.32003 2.37691 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 46 0.15442 3.80302 2.39862 3.50855 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 47 2.81855 3.90359 0.11092 3.68372 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 48 0.22038 3.20021 2.25397 2.95546 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 49 1.59202 2.99626 0.37681 2.80566 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 50 0.47547 2.51732 1.83025 1.98518 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 51 2.63987 3.86857 0.12550 3.66189 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03029 4.20535 4.20535 1.46634 0.26236 1.09861 0.40547 52 3.57729 0.25350 3.29819 1.83873 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.01526 4.19032 * 1.46634 0.26236 0.00000 * //