INFERNAL1/a [1.1.5 | Sep 2023] NAME MAT2A_B ACC RF02261 DESC MAT2A 3'UTR stem loop B STATES 196 NODES 45 CLEN 64 W 79 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 17:18:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF02261/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 1.910645 CKSUM 4210211195 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 46.10 NC 43.90 EFP7GF -10.0061 0.71927 ECMLC 0.66073 -4.97382 3.54524 1600000 333982 0.003593 ECMGC 0.48828 -13.83536 -2.33668 1600000 109763 0.003644 ECMLI 0.63915 -3.54928 4.93496 1600000 271790 0.004415 ECMGI 0.50596 -9.87801 0.71494 1600000 85057 0.004703 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 79 99 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 IL 1 1 2 1 6 1 14 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 15 81 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 65 A U - - MP 3 2 3 7 6 2 19 80 99 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.609 -2.646 -3.674 3.230 -4.220 -5.096 0.054 -3.799 -3.562 1.289 -4.125 0.223 -0.238 -4.197 -1.863 -2.515 ML 4 2 3 7 6 1 12 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 12 78 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 8 76 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 14 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 14 79 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 64 C G - - MP 9 8 6 13 6 2 18 78 97 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -4.165 -4.119 -3.919 -0.359 -2.692 -4.373 3.370 -3.474 -3.956 -0.117 -4.265 -2.117 0.883 -4.244 0.133 -2.803 ML 10 8 6 13 6 1 12 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 11 76 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 7 74 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 13 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 63 a u - - MP 15 14 6 19 6 2 16 76 95 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.409 -2.475 -3.501 2.979 -4.033 -4.822 0.202 -3.670 -3.391 1.502 -3.946 0.934 -0.065 -3.939 -1.695 -2.353 ML 16 14 6 19 6 1 11 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 11 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 7 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 13 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 62 G C - - MP 21 20 6 25 6 2 15 74 93 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.617 -1.906 -3.608 0.907 -4.090 -4.070 0.294 -4.076 -3.710 3.272 -4.068 -0.314 0.015 -2.364 -1.626 -2.625 ML 22 20 6 25 6 1 11 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 10 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 7 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 12 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 61 g u - - MP 27 26 6 31 6 2 13 72 91 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.030 -1.970 -3.299 1.105 -3.488 -3.953 0.688 -1.224 -2.980 1.410 -3.344 2.658 0.298 -3.498 -1.209 -2.120 ML 28 26 6 31 6 1 10 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 9 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 6 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 11 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 11 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 60 C G - - MP 33 32 6 37 4 2 11 70 89 -6.940 -7.147 -0.053 -5.561 -4.541 -4.446 -4.232 -0.679 -2.952 -4.645 3.548 -3.761 -4.281 -0.438 -4.543 -2.393 0.563 -4.611 -0.658 -3.121 ML 34 32 6 37 4 1 9 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 7 69 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 6 68 88 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 10 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 10 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 39 38 6 41 3 1 10 67 86 -8.348 -0.019 -6.666 1.486 -1.772 -1.015 -1.280 D 40 38 6 41 3 0 5 66 85 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 9 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 59 - G - - MR 42 41 3 44 5 1 9 66 85 -7.087 -0.085 -4.697 -7.115 -8.006 -1.565 -2.783 1.720 -2.170 D 43 41 3 44 5 0 4 65 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 58 C G - - MP 45 44 3 49 6 2 9 65 84 -9.084 -9.023 -0.021 -7.800 -8.079 -8.475 -4.041 -3.988 -3.817 -0.242 -2.621 -4.287 3.310 -3.391 -3.851 0.010 -4.172 -1.989 0.965 -4.130 0.244 -2.704 ML 46 44 3 49 6 1 5 64 84 -6.499 -6.845 -1.006 -1.254 -6.695 -4.224 0.097 0.212 -0.587 0.147 MR 47 44 3 49 6 1 4 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 2 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 6 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 57 U A - - MP 51 50 6 55 4 2 7 63 82 -6.940 -7.147 -0.053 -5.561 -4.181 -4.006 -4.020 -0.301 -2.964 -4.585 1.364 -3.659 -4.025 -0.046 -4.399 -1.905 3.324 -4.333 -0.640 -2.850 ML 52 50 6 55 4 1 4 64 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 3 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 1 62 82 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 6 65 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 5 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 57 56 6 59 3 1 5 61 80 -7.957 -0.021 -6.611 -1.473 -1.471 -2.206 1.615 D 58 56 6 59 3 0 1 59 79 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 4 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 60 59 3 62 3 1 5 60 79 -8.348 -0.019 -6.666 -1.565 -2.783 1.720 -2.170 D 61 59 3 62 3 0 0 58 77 -5.620 -0.734 -1.403 IL 62 62 3 62 3 1 3 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 56 - G - - MR 63 62 3 65 3 1 4 59 78 -8.348 -0.019 -6.666 -0.710 -1.737 1.422 -1.292 D 64 62 3 65 3 0 0 57 76 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 55 - U - - MR 66 65 3 68 5 1 3 58 77 -7.087 -0.039 -6.903 -7.115 -8.006 -0.440 -0.469 -1.342 1.102 D 67 65 3 68 5 0 0 57 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 2 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 54 G C - - MP 69 68 3 73 4 2 3 56 76 -6.940 -7.147 -0.053 -5.561 -4.225 -1.575 -4.264 0.554 -4.845 -4.466 -0.288 -4.661 -4.074 3.500 -4.425 -0.540 -0.582 -4.032 -2.271 -3.205 ML 70 68 3 73 4 1 1 57 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 4 1 1 57 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 3 73 4 0 0 56 75 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 59 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - C - - - ML 75 74 6 77 3 1 2 54 73 -7.957 -0.021 -6.611 -1.724 1.620 -2.547 -1.141 D 76 74 6 77 3 0 0 53 72 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - A - - - ML 78 77 3 80 3 1 1 53 71 -8.348 -0.019 -6.666 1.531 -1.736 -1.580 -1.072 D 79 77 3 80 3 0 0 51 70 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 53 - C - - MR 81 80 3 83 3 1 1 52 70 -8.348 -0.019 -6.666 -1.403 1.478 -2.226 -0.684 D 82 80 3 83 3 0 0 50 69 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 52 - A - - MR 84 83 3 86 3 1 1 51 69 -8.348 -0.019 -6.666 1.334 -1.309 -0.869 -0.924 D 85 83 3 86 3 0 0 49 68 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 51 - U - - MR 87 86 3 89 3 1 1 50 68 -8.348 -0.019 -6.666 -1.473 -1.471 -2.206 1.615 D 88 86 3 89 3 0 0 48 67 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 50 - G - - MR 90 89 3 92 3 1 1 49 67 -8.348 -0.019 -6.666 -1.565 -2.783 1.720 -2.170 D 91 89 3 92 3 0 0 47 66 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 49 - A - - MR 93 92 3 95 5 1 1 48 66 -7.087 -0.080 -6.903 -4.858 -8.006 1.307 -1.551 -0.528 -1.025 D 94 92 3 95 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 15 48 c g - - MP 96 95 3 100 6 2 2 47 65 -9.086 -9.025 -0.021 -7.802 -8.081 -8.477 -1.604 -1.701 -1.805 1.177 -1.545 0.045 1.480 -1.240 -1.852 1.374 -2.399 -0.285 1.323 -1.491 0.010 -1.045 ML 97 95 3 100 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 45 64 -7.186 -5.915 -1.282 -5.894 -1.027 -4.107 0.116 0.178 -0.565 0.150 D 99 95 3 100 6 0 0 43 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 47 C G - - MP 102 101 6 106 6 2 2 45 63 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -4.069 -4.024 -3.841 -0.270 -2.634 -4.309 3.310 -3.406 -3.873 -0.031 -4.195 -2.026 0.954 -4.156 0.340 -2.724 ML 103 101 6 106 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 17 46 C G - - MP 108 107 6 112 6 2 2 43 61 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.948 -3.877 -3.823 -0.193 -2.790 -4.383 3.373 -2.036 -3.849 0.036 -4.215 -1.883 0.839 -4.101 -0.503 -2.738 ML 109 107 6 112 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 18 45 u g - - MP 114 113 6 118 6 2 2 41 59 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.444 -3.405 -3.360 0.149 -2.452 -3.954 1.860 -3.124 -3.396 0.389 -3.798 -1.504 1.095 -3.617 2.620 -1.241 ML 115 113 6 118 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 19 44 u a - - MP 120 119 6 124 6 2 2 39 57 -9.105 -5.489 -0.051 -7.820 -8.100 -8.495 -3.542 -3.504 -3.473 0.144 -2.539 -4.090 1.759 -3.214 -3.492 0.381 -3.910 -1.552 2.803 -3.713 0.897 -2.392 ML 121 119 6 124 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.573 -0.434 -6.085 -4.252 -5.358 0.000 0.000 0.000 0.000 [ MATP 28 ] 20 42 G C - - MP 126 125 6 130 6 2 2 37 55 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -4.526 -2.971 -4.610 0.378 -5.186 -4.648 -0.536 -4.926 -4.221 3.581 -4.575 -0.366 -0.852 -4.319 -2.562 -3.495 ML 127 125 6 130 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 41 u a - - MP 132 131 6 136 6 2 2 35 53 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.794 -3.700 -3.646 0.011 -2.583 -4.199 1.935 -3.294 -3.666 0.283 -4.041 -1.673 2.977 -3.927 -0.266 -2.532 ML 133 131 6 136 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 40 G C - - MP 138 137 6 142 6 2 2 33 51 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -4.732 -3.089 -4.830 0.207 -5.218 -4.690 -0.586 -5.072 -4.321 3.636 -4.659 -0.788 -0.971 -4.461 -2.622 -3.707 ML 139 137 6 142 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 39 A U - - MP 144 143 6 148 6 2 2 31 49 -9.105 -9.044 -0.021 -7.820 -8.100 -8.495 -3.583 -2.623 -3.651 3.205 -4.199 -5.061 0.070 -3.783 -3.539 1.318 -4.102 0.310 -0.216 -4.162 -1.844 -2.494 ML 145 143 6 148 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 38 u g - - MP 150 149 6 154 4 2 2 29 47 -6.857 -8.103 -0.081 -4.556 -3.974 -3.974 -3.711 -0.317 -2.492 -4.142 2.040 -3.270 -3.761 -0.100 -4.065 -2.067 0.977 -4.051 2.817 -2.635 ML 151 149 6 154 4 1 1 28 47 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 28 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 26 44 -12.737 -14.007 -2.036 -0.404 IL 154 154 5 154 4 1 1 28 47 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 37 - A - - MR 156 155 6 158 3 1 1 27 45 -8.348 -0.019 -6.666 1.716 -2.357 -1.991 -1.898 D 157 155 6 158 3 0 0 25 44 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 36 - A - - MR 159 158 3 161 3 1 1 26 44 -8.348 -0.019 -6.666 1.716 -2.357 -1.991 -1.898 D 160 158 3 161 3 0 0 24 43 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 35 - G - - MR 162 161 3 164 3 1 1 25 43 -8.348 -0.019 -6.666 -0.883 -1.613 1.445 -1.291 D 163 161 3 164 3 0 0 23 42 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 34 - A - - MR 165 164 3 167 3 1 1 24 42 -8.348 -0.019 -6.666 1.716 -2.357 -1.991 -1.898 D 166 164 3 167 3 0 0 22 41 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 33 - G - - MR 168 167 3 170 3 1 1 23 41 -8.348 -0.019 -6.666 -1.565 -2.783 1.720 -2.170 D 169 167 3 170 3 0 0 21 40 -6.390 -1.568 -0.620 IR 170 170 3 170 3 1 1 23 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 32 - A - - MR 171 170 3 173 5 1 1 22 40 -7.087 -0.125 -6.903 -3.984 -8.006 1.716 -2.357 -1.991 -1.898 D 172 170 3 173 5 0 0 20 39 -5.352 -0.707 -2.978 -4.409 -2.404 IR 173 173 3 173 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 25 31 G C - - MP 174 173 3 178 6 2 2 21 39 -9.066 -9.005 -0.022 -7.782 -8.062 -8.457 -3.989 -1.356 -4.026 0.690 -4.535 -4.350 -0.061 -4.409 -3.903 3.418 -4.274 -0.434 -0.355 -3.861 -2.023 -2.980 ML 175 173 3 178 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 3 178 6 1 1 20 38 -7.370 -6.099 -2.008 -6.077 -0.589 -4.291 -0.050 0.451 -0.750 0.100 D 177 173 3 178 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 26 30 U A - - MP 180 179 6 184 4 2 2 19 37 -6.837 -7.044 -0.058 -5.458 -3.980 -3.797 -3.841 -0.108 -2.829 -4.424 1.494 -3.510 -3.848 0.179 -4.231 -1.703 3.217 -4.139 -0.511 -2.692 ML 181 179 6 184 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 19 37 -5.242 -4.271 -2.138 -0.526 0.939 -0.807 -0.546 -0.276 D 183 179 6 184 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - C - - - ML 186 185 6 188 3 1 1 15 33 -7.861 -0.022 -6.516 -0.862 1.225 -1.495 -0.400 D 187 185 6 188 3 0 0 14 33 -6.844 -0.820 -1.236 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - A - - - ML 189 188 3 191 3 1 1 13 31 -7.957 -0.021 -6.611 1.433 -1.213 -1.407 -1.027 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - U - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -0.729 -1.072 -1.628 1.377 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MAT2A_B ACC RF02261 DESC MAT2A 3'UTR stem loop B LENG 64 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 17:18:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF02261/CM NSEQ 28 EFFN 2.847168 CKSUM 4210211195 STATS LOCAL MSV -8.0033 0.71927 STATS LOCAL VITERBI -8.7039 0.71927 STATS LOCAL FORWARD -3.4541 0.71927 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40414 1.48762 1.20357 1.47671 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 0.00000 * 1 0.31615 3.14916 1.73196 2.97161 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 2 3.10515 0.31430 2.87978 1.77943 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 3 0.49618 2.93728 1.29458 2.74687 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 4 2.03633 2.68559 0.33648 2.44150 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 5 1.97959 2.23943 0.39214 2.52893 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 6 3.43692 0.18895 3.23810 2.29490 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 7 0.27468 2.89397 2.20924 2.58966 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 8 2.85634 0.37399 2.71529 1.66943 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 9 3.14909 2.10052 2.97383 0.24385 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 10 2.82788 2.75529 3.35315 0.17162 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 11 2.93290 3.84051 0.11387 3.41413 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 12 2.27435 3.18017 0.21243 3.05885 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 13 3.12461 0.15306 3.69858 2.61449 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 14 0.24165 2.85783 2.76243 2.36299 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.07659 3.98185 2.89902 1.46634 0.26236 1.09861 0.40547 15 1.64723 1.18646 1.43693 1.33006 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.03948 3.94475 3.94475 1.46634 0.26236 0.51717 0.90685 16 3.00223 0.35940 2.78640 1.65764 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 17 3.01105 0.27659 2.79413 2.03083 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 18 2.80133 1.53778 2.58685 0.43208 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 19 2.68922 1.60677 2.46721 0.43586 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 20 2.58084 3.37966 0.15996 3.26881 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 21 2.82644 1.45041 2.59151 0.45982 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 22 2.73030 3.46526 0.13903 3.40106 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 23 0.33734 3.10122 1.67551 2.91636 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 24 3.13897 1.40152 2.95812 0.41774 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.11888 3.98185 2.37049 1.46634 0.26236 1.09861 0.40547 25 2.13234 2.99619 0.25509 2.87147 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04115 3.90412 3.90412 1.46634 0.26236 1.94728 0.15392 26 3.04138 1.96085 2.80354 0.28649 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04115 3.90412 3.90412 1.46634 0.26236 1.94728 0.15392 27 2.28761 0.39076 2.68430 1.87288 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04115 3.90412 3.90412 1.46634 0.26236 0.33592 1.25414 28 0.30448 2.35511 2.60695 2.36604 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 29 2.09173 2.35394 2.79171 0.32820 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 30 0.33467 2.92933 1.80480 2.71079 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 31 2.88637 0.29938 2.75255 1.97200 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 32 0.12100 3.46927 3.17138 3.19712 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 33 2.93290 3.84051 0.11387 3.41413 33 G - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 34 0.12100 3.46927 3.17138 3.19712 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 35 2.29323 2.70545 0.27494 2.62274 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 36 0.12100 3.46927 3.17138 3.19712 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 37 0.12100 3.46927 3.17138 3.19712 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 38 2.19208 3.11171 0.23778 2.89294 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 39 3.11921 2.12872 2.89792 0.24631 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 40 3.57903 0.16630 3.30074 2.42535 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 41 0.52359 2.75590 1.31487 2.58295 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 42 3.44229 0.20628 3.20070 2.17444 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.10006 2.56955 3.98185 0.43162 1.04826 1.09861 0.40547 43 0.65637 2.62981 1.12923 2.45465 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 44 2.08304 2.74502 0.33698 2.33016 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 45 2.27806 2.94347 0.26256 2.58029 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 46 2.13568 2.91297 0.27216 2.72131 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 47 1.55554 1.23268 1.37793 1.40521 48 c - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 48 0.39976 2.70069 1.78355 2.36106 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 49 2.93290 3.84051 0.11387 3.41413 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 50 2.82788 2.75529 3.35315 0.17162 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 51 0.38224 2.43883 2.08317 2.24551 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 52 2.77999 0.24370 3.36545 2.12282 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 53 3.29282 0.22559 3.01230 2.15739 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 54 1.81174 1.76909 2.49541 0.53841 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 55 2.09105 2.80251 0.30095 2.58140 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 56 0.26606 3.21057 1.94517 2.98951 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.08082 3.98185 2.83048 1.46634 0.26236 1.09861 0.40547 57 2.15084 2.92397 0.26690 2.74667 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03965 3.94068 3.94068 1.46634 0.26236 0.49005 0.94828 58 2.93290 3.84051 0.11387 3.41413 59 G - - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 59 2.57528 3.40573 0.16269 3.19836 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 60 2.74343 1.96558 2.39095 0.35093 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 61 2.79929 0.36111 2.50096 1.83108 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 62 2.96445 1.92713 2.73407 0.30396 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 63 2.23480 3.04151 0.23843 2.85844 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03802 3.98185 3.98185 1.46634 0.26236 1.09861 0.40547 64 3.19758 2.16679 2.94738 0.23305 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.01919 3.96302 * 1.46634 0.26236 0.00000 * //