INFERNAL1/a [1.1.5 | Sep 2023] NAME MAT2A_A ACC RF02260 DESC MAT2A 3'UTR stem loop A STATES 199 NODES 48 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 12:09:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF02260/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 2.075195 CKSUM 149255785 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.20 NC 39.60 EFP7GF -10.1882 0.71911 ECMLC 0.69198 -4.72541 3.24301 1600000 297766 0.004030 ECMGC 0.44833 -15.80811 -3.57896 1600000 96196 0.004158 ECMLI 0.69443 -3.05142 4.59716 1600000 243170 0.004935 ECMGI 0.46553 -11.83948 -0.59004 1600000 75237 0.005317 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 81 101 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 IL 1 1 2 1 6 1 22 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 22 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 67 G C - - MP 3 2 3 7 6 2 25 81 101 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -2.976 -2.384 -3.066 0.908 -3.258 -1.342 0.624 -3.460 -1.921 3.059 -3.584 -0.375 0.379 -3.038 -1.125 -2.186 ML 4 2 3 7 6 1 20 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 19 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 15 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 21 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 22 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 66 c g - - MP 9 8 6 13 6 2 23 79 99 -9.130 -9.069 -0.072 -7.846 -4.731 -8.521 -2.069 -2.233 -1.754 0.740 -2.166 -2.183 2.783 -2.561 -2.315 0.690 -1.865 -0.819 0.988 -2.396 -0.151 -1.489 ML 10 8 6 13 6 1 19 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 18 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 14 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 21 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 21 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 65 c g - - MP 15 14 6 19 6 2 21 77 97 -9.080 -9.019 -0.022 -7.796 -8.076 -8.471 -2.942 -2.971 -3.012 0.496 -1.176 -3.761 2.899 -2.981 -3.035 0.653 -3.528 -1.161 1.236 -3.195 -0.221 -0.852 ML 16 14 6 19 6 1 18 77 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 17 76 96 -7.473 -6.202 -0.951 -6.180 -1.314 -4.394 0.059 -0.528 0.033 0.312 D 18 14 6 19 6 0 14 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 19 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 19 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 64 u g - - MP 21 20 6 25 4 2 20 75 95 -7.006 -7.213 -0.051 -5.628 -2.620 -2.664 -2.717 0.677 -2.259 -3.484 1.742 -2.776 -2.757 0.871 -3.267 -0.941 1.739 -1.603 1.841 -1.799 ML 22 20 6 25 4 1 17 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 15 75 95 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 13 74 94 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 18 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 18 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 27 26 6 29 3 1 18 73 93 -8.019 -0.020 -6.673 -1.587 -1.566 -2.326 1.646 D 28 26 6 29 3 0 13 72 91 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 17 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 30 29 3 32 3 1 17 72 92 -8.019 -0.020 -6.673 -1.213 -0.996 -1.948 1.490 D 31 29 3 32 3 0 12 71 90 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 16 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 16 71 91 -8.406 -0.018 -6.723 -1.587 -1.566 -2.326 1.646 D 34 32 3 35 3 0 11 70 89 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 15 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 63 - A - - MR 36 35 3 38 3 1 16 70 89 -8.406 -0.018 -6.723 1.742 -2.482 -2.103 -2.035 D 37 35 3 38 3 0 9 68 88 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 14 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 62 - A - - MR 39 38 3 41 5 1 15 69 88 -3.091 -0.211 -6.956 -7.169 -8.060 1.742 -2.482 -2.103 -2.035 D 40 38 3 41 5 0 9 67 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 13 69 89 -1.911 -0.728 -6.544 -3.293 -5.817 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 59 u a - - MP 42 41 3 46 6 2 16 68 87 -9.106 -9.046 -0.021 -7.822 -8.102 -8.497 -3.048 -3.082 -3.076 0.450 -0.329 -3.783 2.139 -2.954 -3.093 0.595 -3.568 -1.241 2.451 -3.278 -0.109 -2.064 ML 43 41 3 46 6 1 10 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 10 66 86 -7.240 -5.969 -1.209 -5.947 -1.081 -4.160 0.048 -0.392 -0.548 0.604 D 45 41 3 46 6 0 5 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 12 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 12 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 58 u g - - MP 48 47 6 52 6 2 14 66 85 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -3.918 -3.931 -3.698 -0.262 -2.521 -4.164 2.411 -3.285 -3.740 -0.060 -4.069 -2.027 0.996 -4.013 2.523 -2.619 ML 49 47 6 52 6 1 10 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 9 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 5 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 11 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 11 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 57 C G - - MP 54 53 6 58 6 2 13 64 83 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -4.672 -4.589 -4.341 -0.810 -3.032 -4.737 3.587 -3.855 -4.395 -0.586 -4.642 -2.537 0.469 -4.733 -0.742 -3.230 ML 55 53 6 58 6 1 9 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 7 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 4 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 10 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 10 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 56 C G - - MP 60 59 6 64 4 2 11 62 81 -7.006 -7.213 -0.051 -5.628 -4.263 -4.227 -4.001 -0.453 -2.748 -4.441 3.407 -3.539 -4.039 -0.225 -4.339 -2.225 0.820 -4.336 0.112 -2.881 ML 61 59 6 64 4 1 8 62 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 5 61 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 4 60 80 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 10 63 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 9 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - C - - - ML 66 65 6 68 3 1 10 59 78 -8.406 -0.018 -6.723 -1.874 1.658 -2.702 -1.261 D 67 65 6 68 3 0 4 58 77 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 8 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - a - - MR 69 68 3 71 5 1 9 58 77 -7.141 -0.038 -6.956 -7.169 -8.060 0.935 -0.861 -0.231 -0.544 D 70 68 3 71 5 0 2 57 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 6 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 54 c g - - MP 72 71 3 76 6 2 10 57 76 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -2.495 -2.532 -2.637 0.576 -2.306 -0.784 2.829 -1.469 -2.666 0.661 -3.168 -0.945 1.087 -2.788 -0.289 -1.778 ML 73 71 3 76 6 1 4 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 4 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 5 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 5 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 53 a u - - MP 78 77 6 82 6 2 8 55 74 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -3.102 0.079 -3.207 2.846 -3.569 -4.298 0.410 -3.451 -3.178 1.594 -3.714 -0.070 0.164 -3.498 -1.385 -2.173 ML 79 77 6 82 6 1 3 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 3 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 5 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 5 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 52 G C - - MP 84 83 6 88 6 2 7 53 72 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -4.217 -2.814 -4.255 0.623 -4.925 -4.585 -0.309 -4.619 -4.064 3.429 -4.439 0.463 -0.599 -4.108 -2.308 -3.152 ML 85 83 6 88 6 1 3 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 4 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 4 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 51 a u - - MP 90 89 6 94 4 2 5 51 70 -7.006 -7.213 -0.051 -5.628 -3.415 -2.459 -3.517 2.883 -4.096 -4.847 0.134 -3.697 -3.394 1.506 -3.949 1.333 -0.120 -3.954 -1.754 -2.361 ML 91 89 6 94 4 1 2 52 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 3 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 3 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - C - - - ML 96 95 6 98 3 1 4 49 68 -8.019 -0.020 -6.673 -1.874 1.658 -2.702 -1.261 D 97 95 6 98 3 0 0 47 67 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 2 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - - - ML 99 98 3 101 3 1 3 48 67 -8.406 -0.018 -6.723 -0.860 -0.189 -1.611 1.166 D 100 98 3 101 3 0 0 46 65 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 2 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 50 - c - - MR 102 101 3 104 3 1 3 47 66 -8.406 -0.018 -6.723 -0.507 0.776 -0.490 -0.198 D 103 101 3 104 3 0 0 45 64 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 49 - G - - MR 105 104 3 107 3 1 2 46 65 -8.406 -0.018 -6.723 -1.697 -2.935 1.749 -2.322 D 106 104 3 107 3 0 0 44 63 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 48 - A - - MR 108 107 3 110 5 1 2 45 64 -7.141 -0.038 -6.956 -7.169 -8.060 1.260 -1.327 -0.838 -0.627 D 109 107 3 110 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 47 U A - - MP 111 110 3 115 6 2 3 44 63 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -4.321 -4.149 -4.144 -0.434 -3.059 -4.696 1.272 -3.763 -4.148 -0.199 -4.515 -2.044 3.387 -4.467 -0.732 -2.959 ML 112 110 3 115 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 46 G C - - MP 117 116 6 121 4 2 2 42 61 -7.006 -7.213 -0.051 -5.628 -4.852 -3.147 -4.963 0.126 -5.388 -4.737 -0.725 -5.212 -4.399 3.664 -4.728 -0.850 -1.108 -4.540 -2.768 -3.837 ML 118 116 6 121 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 42 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 41 60 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - U - - - ML 123 122 6 125 3 1 1 39 58 -8.019 -0.020 -6.673 -1.151 -0.881 -1.886 1.452 D 124 122 6 125 3 0 0 38 57 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - U - - - ML 126 125 3 128 3 1 1 38 57 -8.406 -0.018 -6.723 -1.587 -1.566 -2.326 1.646 D 127 125 3 128 3 0 0 37 55 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 45 - u - - MR 129 128 3 131 3 1 1 37 56 -8.406 -0.018 -6.723 -0.487 -0.386 -0.767 0.951 D 130 128 3 131 3 0 0 35 54 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 44 - U - - MR 132 131 3 134 5 1 1 36 55 -7.141 -0.038 -6.956 -7.169 -8.060 -1.587 -1.566 -2.326 1.646 D 133 131 3 134 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 43 G C - - MP 135 134 3 139 6 2 2 35 54 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -4.569 -2.993 -4.649 0.357 -5.286 -4.677 -0.610 -4.985 -4.263 3.587 -4.613 -0.272 -0.917 -4.347 -2.637 -3.535 ML 136 134 3 139 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 42 G C - - MP 141 140 6 145 6 2 2 33 52 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -4.852 -3.147 -4.963 0.126 -5.388 -4.737 -0.725 -5.212 -4.399 3.664 -4.728 -0.850 -1.108 -4.540 -2.768 -3.837 ML 142 140 6 145 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 41 C G - - MP 147 146 6 151 4 2 2 31 50 -6.918 -8.164 -0.078 -4.617 -3.860 -3.835 -3.681 -0.105 -2.534 -4.190 3.060 -3.280 -3.703 0.107 -4.057 -1.859 1.079 -3.973 1.231 -2.570 ML 148 146 6 151 4 1 1 30 49 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 30 49 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 28 47 -12.737 -14.007 -2.036 -0.404 IL 151 151 5 151 4 1 1 30 49 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 40 - A - - MR 153 152 6 155 3 1 1 29 48 -8.406 -0.018 -6.723 1.742 -2.482 -2.103 -2.035 D 154 152 6 155 3 0 0 27 46 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 39 - A - - MR 156 155 3 158 3 1 1 28 47 -8.406 -0.018 -6.723 1.742 -2.482 -2.103 -2.035 D 157 155 3 158 3 0 0 26 45 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 38 - G - - MR 159 158 3 161 3 1 1 27 46 -8.406 -0.018 -6.723 -1.697 -2.935 1.749 -2.322 D 160 158 3 161 3 0 0 25 44 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 37 - A - - MR 162 161 3 164 3 1 1 26 44 -8.406 -0.018 -6.723 1.742 -2.482 -2.103 -2.035 D 163 161 3 164 3 0 0 24 43 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 36 - G - - MR 165 164 3 167 3 1 1 25 43 -8.406 -0.018 -6.723 -1.697 -2.935 1.749 -2.322 D 166 164 3 167 3 0 0 23 42 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 26 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 35 - A - - MR 168 167 3 170 5 1 1 24 42 -7.141 -0.038 -6.956 -7.169 -8.060 1.742 -2.482 -2.103 -2.035 D 169 167 3 170 5 0 0 23 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 170 170 3 170 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 26 34 G C - - MP 171 170 3 175 6 2 2 23 41 -9.130 -9.069 -0.021 -7.846 -8.126 -8.521 -4.852 -3.147 -4.963 0.126 -5.388 -4.737 -0.725 -5.212 -4.399 3.664 -4.728 -0.850 -1.108 -4.540 -2.768 -3.837 ML 172 170 3 175 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 27 33 U A - - MP 177 176 6 181 4 2 2 21 39 -7.006 -7.213 -0.051 -5.628 -4.321 -4.149 -4.144 -0.434 -3.059 -4.696 1.272 -3.763 -4.148 -0.199 -4.515 -2.044 3.387 -4.467 -0.732 -2.959 ML 178 176 6 181 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - A - - - ML 183 182 6 185 3 1 1 17 36 -8.019 -0.020 -6.673 1.542 -1.904 -1.156 -1.428 D 184 182 6 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - G - - - ML 186 185 3 188 3 1 1 16 35 -8.019 -0.020 -6.673 -0.607 -1.370 1.069 -0.219 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - G - - - ML 189 188 3 191 3 1 1 15 33 -8.019 -0.020 -6.673 0.030 -1.725 1.151 -1.135 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 31 - C - - - ML 192 191 3 194 3 1 1 13 31 -8.019 -0.020 -6.673 -0.977 1.104 -1.797 0.077 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 32 - U - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -1.587 -1.566 -2.326 1.646 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MAT2A_A ACC RF02260 DESC MAT2A 3'UTR stem loop A LENG 65 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 12:09:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF02260/CM NSEQ 20 EFFN 3.061523 CKSUM 149255785 STATS LOCAL MSV -7.7659 0.71911 STATS LOCAL VITERBI -8.8492 0.71911 STATS LOCAL FORWARD -3.9512 0.71911 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46537 1.42124 1.28587 1.38156 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 0.00000 * 1 2.12176 2.20463 0.39240 2.35961 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 2 1.84498 0.80050 1.77377 1.49981 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.13809 4.01719 2.19841 1.46634 0.26236 1.09861 0.40547 3 2.30851 0.59792 2.12036 1.46686 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04051 3.91961 3.91961 1.46634 0.26236 0.28100 1.40663 4 2.23467 1.55311 2.04952 0.59314 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 5 2.91332 2.82672 3.44120 0.15727 5 U - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 6 2.53533 2.25092 3.05193 0.26371 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 7 2.91332 2.82672 3.44120 0.15727 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.08379 4.01719 2.77467 1.46634 0.26236 1.09861 0.40547 8 2.39240 1.07706 2.20479 0.78149 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.03841 3.97181 3.97181 1.46634 0.26236 0.45572 1.00509 9 3.07425 1.06030 2.88917 0.59457 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 10 3.52065 0.17282 3.33743 2.36871 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 11 3.15107 0.29868 2.94548 1.81509 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 12 3.23123 0.13800 3.80201 2.70207 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 13 2.23036 0.55300 2.09094 1.64137 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 14 0.42422 2.74496 1.58959 2.55805 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 15 2.37215 3.16229 0.20331 3.02891 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 16 0.57395 2.98601 1.12612 2.78179 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 17 3.23123 0.13800 3.80201 2.70207 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 18 2.20889 1.52699 2.74133 0.49675 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 19 3.35263 2.19509 3.14164 0.21017 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 20 2.79410 3.55926 0.12772 3.49761 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 21 2.47912 2.14495 2.99613 0.28884 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 22 2.91332 2.82672 3.44120 0.15727 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 23 2.59749 3.41851 0.15542 3.30432 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 24 2.79447 3.55976 0.12765 3.49830 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 25 2.90500 0.52509 2.69214 1.25172 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 26 2.79149 3.55576 0.12818 3.49284 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 27 3.35105 2.19495 3.14085 0.21030 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 28 0.24052 3.00139 2.32602 2.71235 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 29 2.00921 2.55628 0.52863 1.61494 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 30 1.41501 2.83838 0.49097 2.44732 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 31 2.32544 0.50929 2.92404 1.39585 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 32 2.91332 2.82672 3.44120 0.15727 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 33 0.23779 3.33614 2.03211 3.10111 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 34 3.70492 0.15138 3.41074 2.49063 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 35 0.11007 3.55824 3.25224 3.29536 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 36 3.02060 3.93834 0.10330 3.51021 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 37 0.11007 3.55824 3.25224 3.29536 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 38 3.02060 3.93834 0.10330 3.51021 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 39 0.11007 3.55824 3.25224 3.29536 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 40 0.11007 3.55824 3.25224 3.29536 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 41 2.08568 2.85554 0.28933 2.66661 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 42 3.69761 0.15185 3.40733 2.48928 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 43 3.52495 0.20365 3.25828 2.15120 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 44 2.91332 2.82672 3.44120 0.15727 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 45 1.85337 1.68377 1.95972 0.66025 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 46 3.69708 0.15188 3.40708 2.48918 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 47 0.23721 3.34048 2.03277 3.10599 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 48 0.44039 2.46737 2.05327 1.94426 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 49 3.02060 3.93834 0.10330 3.51021 49 G - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 50 1.91213 0.72836 1.74245 1.63761 50 c - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 51 2.99310 1.93098 2.78008 0.29729 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 52 3.25426 0.31072 2.98471 1.72645 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 53 2.78029 1.43502 2.54354 0.47597 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 54 1.88175 1.87865 0.61075 1.88429 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 55 0.67749 2.04596 1.54257 1.90366 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 56 2.27258 3.09798 0.22686 2.90436 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 57 2.63455 3.48438 0.15155 3.26495 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 58 2.16245 3.02503 0.25312 2.81296 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 59 0.77792 2.35702 1.12216 2.11726 59 a - - > 1.38629 1.38629 1.38629 1.38629 0.19865 1.81919 4.01719 0.62932 0.76132 1.09861 0.40547 60 0.11007 3.55824 3.25224 3.29536 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 61 0.11007 3.55824 3.25224 3.29536 63 A - - - 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 62 1.40578 2.05544 0.70518 2.01916 64 g - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 63 1.68892 2.26306 0.59272 1.84247 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 64 1.77068 1.94953 0.67152 1.73437 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03667 4.01719 4.01719 1.46634 0.26236 1.09861 0.40547 65 2.43527 0.41722 2.31395 1.86640 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.01850 3.99902 * 1.46634 0.26236 0.00000 * //