INFERNAL1/a [1.1.5 | Sep 2023] NAME adapt33_1 ACC RF02255 DESC Adaptive response 33 conserved region 1 STATES 232 NODES 78 CLEN 76 W 161 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 03:21:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02255/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.821289 CKSUM 3311820461 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 61.00 NC 58.80 EFP7GF -7.3806 0.71862 ECMLC 0.48037 -12.46482 1.06203 1600000 796457 0.001507 ECMGC 0.36484 -14.06265 0.80106 1600000 90611 0.004414 ECMLI 0.38811 -10.07773 4.68897 1600000 369945 0.003244 ECMGI 0.41443 -4.62811 7.47393 1600000 60287 0.006635 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 161 246 -7.274 -7.481 -0.042 -5.895 IL 1 1 2 1 4 2 31 163 249 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 31 163 248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 2 30 161 247 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 4 2 3 5 3 0 26 158 243 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 32 168 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 2 29 160 245 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 7 5 3 8 3 0 25 157 242 -11.551 -1.585 -0.585 IL 8 8 3 8 3 3 31 166 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 29 159 244 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 10 8 3 11 3 0 24 156 240 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 30 165 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 28 157 242 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 13 11 3 14 3 0 23 154 239 -11.551 -1.585 -0.585 IL 14 14 3 14 3 2 30 164 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 27 156 241 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 16 14 3 17 3 0 23 153 238 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 29 162 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 26 155 239 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 19 17 3 20 3 0 22 152 236 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 28 161 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 26 154 238 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 22 20 3 23 3 0 21 150 235 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 27 160 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 25 152 237 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 25 23 3 26 3 0 20 149 233 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 27 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 24 151 235 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 28 26 3 29 3 0 20 148 232 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 26 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 24 150 234 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 31 29 3 32 3 0 19 147 230 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 25 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 23 148 232 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 34 32 3 35 3 0 18 145 229 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 24 155 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 22 147 231 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 37 35 3 38 3 0 17 144 227 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 24 153 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 21 146 229 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 40 38 3 41 3 0 17 143 226 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 23 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 42 41 3 44 3 1 21 144 228 -5.650 -0.059 -5.650 -1.173 0.321 -1.350 0.938 D 43 41 3 44 3 0 16 141 225 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 22 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 20 143 227 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 46 44 3 47 3 0 15 140 223 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 22 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 19 142 225 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 49 47 3 50 3 0 15 139 222 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 21 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - a - - - ML 51 50 3 53 3 1 19 140 224 -5.650 -0.059 -5.650 0.821 0.167 -1.044 -0.678 D 52 50 3 53 3 0 14 137 220 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 20 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 18 139 222 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 55 53 3 56 3 0 13 136 219 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 19 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 17 138 221 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 58 56 3 59 3 0 12 135 217 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 19 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 16 137 219 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 61 59 3 62 3 0 12 133 216 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 18 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 16 135 218 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 64 62 3 65 3 0 11 132 214 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 17 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - u - - - ML 66 65 3 68 3 1 15 134 216 -5.650 -0.059 -5.650 0.136 0.098 -0.805 0.331 D 67 65 3 68 3 0 10 131 213 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 17 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 14 133 215 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 70 68 3 71 3 0 10 129 211 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 16 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 14 131 213 -5.650 -0.059 -5.650 -1.853 -2.651 1.753 -2.370 D 73 71 3 74 3 0 9 128 210 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 15 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 13 130 212 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 76 74 3 77 3 0 8 127 208 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 15 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 12 128 210 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 79 77 3 80 3 0 8 125 207 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 14 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 81 80 3 83 3 1 12 127 209 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 82 80 3 83 3 0 7 124 205 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 13 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - a - - - ML 84 83 3 86 3 1 11 126 207 -5.650 -0.059 -5.650 0.767 -1.315 0.467 -0.960 D 85 83 3 86 3 0 7 123 204 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 13 132 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - u - - - ML 87 86 3 89 3 1 11 124 206 -5.650 -0.059 -5.650 0.200 0.097 -0.800 0.272 D 88 86 3 89 3 0 6 121 202 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 12 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - a - - - ML 90 89 3 92 3 1 10 123 204 -5.650 -0.059 -5.650 0.814 -0.946 -0.959 0.274 D 91 89 3 92 3 0 5 120 201 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 11 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 93 92 3 95 3 1 9 122 203 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 94 92 3 95 3 0 5 118 199 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 11 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - u - - - ML 96 95 3 98 3 1 9 120 201 -5.650 -0.059 -5.650 -0.645 0.054 0.115 0.310 D 97 95 3 98 3 0 4 117 198 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 10 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 99 98 3 101 3 1 8 119 200 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 100 98 3 101 3 0 4 116 196 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 10 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 102 101 3 104 3 1 8 118 198 -5.650 -0.059 -5.650 -1.853 -2.651 1.753 -2.370 D 103 101 3 104 3 0 3 114 194 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 9 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - u - - - ML 105 104 3 107 3 1 7 116 196 -5.650 -0.059 -5.650 -1.173 0.321 -1.350 0.938 D 106 104 3 107 3 0 2 113 193 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 8 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 6 115 195 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 109 107 3 110 3 0 2 112 191 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 8 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 111 110 3 113 3 1 6 113 193 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 112 110 3 113 3 0 1 110 190 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 7 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - a - - - ML 114 113 3 116 3 1 5 112 192 -5.650 -0.059 -5.650 0.838 -1.313 0.373 -0.958 D 115 113 3 116 3 0 1 109 188 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 7 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - u - - - ML 117 116 3 119 3 1 5 111 190 -5.650 -0.059 -5.650 -1.178 0.259 -1.354 0.978 D 118 116 3 119 3 0 0 107 187 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 6 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 120 119 3 122 3 1 4 109 189 -5.650 -0.059 -5.650 0.048 -1.585 1.142 -1.231 D 121 119 3 122 3 0 0 106 185 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 6 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - u - - - ML 123 122 3 125 3 1 4 108 187 -5.650 -0.059 -5.650 -0.844 -0.963 0.242 0.805 D 124 122 3 125 3 0 0 104 183 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 5 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - u - - - ML 126 125 3 128 3 1 3 106 185 -5.650 -0.059 -5.650 -1.173 0.321 -1.350 0.938 D 127 125 3 128 3 0 0 103 182 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 5 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 129 128 3 131 3 1 3 105 184 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 130 128 3 131 3 0 0 102 180 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 4 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - c - - - ML 132 131 3 134 3 1 3 104 182 -5.650 -0.059 -5.650 -1.258 0.918 -1.440 0.405 D 133 131 3 134 3 0 0 100 178 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 4 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - u - - - ML 135 134 3 137 3 1 2 102 181 -5.650 -0.059 -5.650 0.231 -0.919 -0.976 0.839 D 136 134 3 137 3 0 0 99 177 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 4 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - C - - - ML 138 137 3 140 3 1 2 101 179 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 139 137 3 140 3 0 0 97 175 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 141 140 3 143 3 1 2 99 177 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 142 140 3 143 3 0 0 96 174 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 3 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - u - - - ML 144 143 3 146 3 1 1 98 176 -5.650 -0.059 -5.650 0.151 0.150 -0.807 0.273 D 145 143 3 146 3 0 0 94 172 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - u - - - ML 147 146 3 149 3 1 1 96 174 -5.650 -0.059 -5.650 0.156 -0.927 -0.994 0.893 D 148 146 3 149 3 0 0 93 170 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - c - - - ML 150 149 3 152 3 1 1 95 172 -5.650 -0.059 -5.650 -1.258 0.918 -1.440 0.405 D 151 149 3 152 3 0 0 92 169 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 2 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - A - - - ML 153 152 3 155 3 1 1 93 170 -2.295 -0.745 -2.327 1.745 -2.383 -2.121 -2.143 D 154 152 3 155 3 0 0 91 168 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 2 94 171 -5.569 -0.031 -13.213 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - g - - - ML 156 155 3 158 3 1 1 93 170 -5.365 -0.072 -5.365 0.407 -1.094 0.685 -0.740 D 157 155 3 158 3 0 0 89 166 -13.552 -3.586 -0.126 IL 158 158 3 158 3 1 2 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - G - - - ML 159 158 3 161 3 1 1 91 168 -5.365 -0.072 -5.365 -1.403 -2.020 1.620 -1.730 D 160 158 3 161 3 0 0 89 166 -13.552 -0.263 -2.586 IL 161 161 3 161 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - a - - - ML 162 161 3 164 3 1 1 89 166 -5.650 -0.059 -5.650 0.779 0.228 -1.042 -0.672 D 163 161 3 164 3 0 0 86 162 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - A - - - ML 165 164 3 167 3 1 1 88 164 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 166 164 3 167 3 0 0 84 160 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - A - - - ML 168 167 3 170 3 1 1 86 162 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 169 167 3 170 3 0 0 83 158 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - A - - - ML 171 170 3 173 3 1 1 85 161 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 172 170 3 173 3 0 0 81 157 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - A - - - ML 174 173 3 176 3 1 1 83 159 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 175 173 3 176 3 0 0 80 155 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - C - - - ML 177 176 3 179 3 1 1 82 157 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 178 176 3 179 3 0 0 78 153 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - A - - - ML 180 179 3 182 3 1 1 80 155 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 181 179 3 182 3 0 0 76 151 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - U - - - ML 183 182 3 185 3 1 1 78 153 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 184 182 3 185 3 0 0 75 149 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - C - - - ML 186 185 3 188 3 1 1 77 151 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 187 185 3 188 3 0 0 73 147 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - C - - - ML 189 188 3 191 3 1 1 75 149 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 190 188 3 191 3 0 0 71 145 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 83 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 65 - U - - - ML 192 191 3 194 3 1 1 73 147 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 193 191 3 194 3 0 0 70 143 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 66 - U - - - ML 195 194 3 197 3 1 1 72 145 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 196 194 3 197 3 0 0 68 141 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 67 - U - - - ML 198 197 3 200 3 1 1 70 143 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 199 197 3 200 3 0 0 66 139 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 68 - g - - - ML 201 200 3 203 3 1 1 68 141 -5.650 -0.059 -5.650 -0.888 -1.121 0.884 0.207 D 202 200 3 203 3 0 0 64 136 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 69 - A - - - ML 204 203 3 206 3 1 1 66 139 -5.650 -0.059 -5.650 1.745 -2.383 -2.121 -2.143 D 205 203 3 206 3 0 0 62 134 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 70 - u - - - ML 207 206 3 209 3 1 1 64 137 -5.650 -0.059 -5.650 -1.173 0.321 -1.350 0.938 D 208 206 3 209 3 0 0 60 132 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 71 - U - - - ML 210 209 3 212 3 1 1 62 134 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 211 209 3 212 3 0 0 58 129 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 72 - U - - - ML 213 212 3 215 3 1 1 60 132 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 214 212 3 215 3 0 0 55 126 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 73 - C - - - ML 216 215 3 218 3 1 1 58 129 -5.650 -0.059 -5.650 -2.078 1.673 -2.286 -1.433 D 217 215 3 218 3 0 0 52 123 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 74 - a - - - ML 219 218 3 221 3 1 1 55 126 -5.650 -0.059 -5.650 0.757 -0.934 -0.948 0.343 D 220 218 3 221 3 0 0 49 119 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 75 - u - - - ML 222 221 3 224 3 1 1 52 122 -5.650 -0.059 -5.650 -1.178 0.259 -1.354 0.978 D 223 221 3 224 3 0 0 45 114 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 76 - U - - - ML 225 224 3 227 3 1 1 48 118 -5.650 -0.059 -5.650 -1.818 -1.465 -1.985 1.633 D 226 224 3 227 3 0 0 32 101 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 77 - C - - - ML 228 227 3 230 2 1 1 1 1 * 0.000 -2.078 1.673 -2.286 -1.433 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 77 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME adapt33_1 ACC RF02255 DESC Adaptive response 33 conserved region 1 LENG 76 MAXL 161 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 03:21:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02255/CM NSEQ 3 EFFN 2.821289 CKSUM 3311820461 STATS LOCAL MSV -8.7451 0.71862 STATS LOCAL VITERBI -9.4148 0.71862 STATS LOCAL FORWARD -3.2991 0.71862 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.13989 1.55410 1.96397 1.11332 1.38629 1.38629 1.38629 1.38629 0.02406 5.04171 4.05654 0.39730 1.11515 0.00000 * 1 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 2 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 3 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 4 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 5 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 6 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 7 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 8 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 9 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 10 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 11 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 12 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 13 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 14 2.19966 1.16395 2.32205 0.73639 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 15 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 16 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 17 0.81705 1.27020 2.11013 1.85618 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 18 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 19 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 20 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 21 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 22 1.29181 1.31812 1.94410 1.15686 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 23 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 24 2.67040 3.22416 0.17123 3.02905 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 25 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 26 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 27 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 28 0.85443 2.29792 1.06289 2.05141 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 29 1.24745 1.31919 1.94093 1.19785 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 30 0.82226 2.04222 2.05127 1.19650 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 31 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 32 1.83371 1.34877 1.30659 1.17157 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 33 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 34 2.67040 3.22416 0.17123 3.02905 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 35 2.19966 1.16395 2.32205 0.73639 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 36 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 37 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 38 0.80535 2.29613 1.12777 2.05053 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 39 2.20255 1.20695 2.32495 0.70809 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 40 1.35281 2.48475 0.59485 2.23967 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 41 1.97104 2.05387 1.21822 0.82852 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 42 2.19966 1.16395 2.32205 0.73639 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 43 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 44 2.25818 0.75022 2.38477 1.10538 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 45 1.22608 2.02322 2.06274 0.80470 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 46 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 47 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 48 1.28132 1.28211 1.94588 1.19727 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 49 1.27796 2.02868 2.07557 0.76701 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 50 2.25818 0.75022 2.38477 1.10538 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 51 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.51609 1.59063 1.61267 0.02129 3.86002 1.09861 0.40547 52 1.10446 2.14485 0.91169 1.89925 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04976 3.71850 3.71850 1.46634 0.26236 2.48576 0.08693 53 2.35885 2.78627 0.26334 2.58573 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04976 3.71850 3.71850 1.46634 0.26236 0.18215 1.79261 54 0.84646 1.22843 2.10864 1.85208 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 55 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 56 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 57 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 58 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 59 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 60 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 61 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 62 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 63 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 64 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 65 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 66 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 67 2.00203 2.16355 0.77358 1.24249 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 68 0.17675 3.03778 2.85664 2.87159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 69 2.19966 1.16395 2.32205 0.73639 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 70 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 71 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 72 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 73 0.86170 2.03363 2.04373 1.14838 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 74 2.20255 1.20695 2.32495 0.70809 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 75 2.64676 2.40194 2.76223 0.25434 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 76 2.82694 0.22694 2.97069 2.37975 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //