# STOCKHOLM 1.0
#=GF ID Six3os1_7
#=GF AC RF02252
#=GF DE Six3os1 conserved region 7
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 45.2
#=GF TC 51.3
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.99 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF DR GO; 0010468; regulation of gene expression;
#=GF RN [1]
#=GF RM 21936910
#=GF RT The long noncoding RNA Six3OS acts in trans to regulate retinal
#=GF RT development by modulating Six3 activity.
#=GF RA Rapicavoli NA, Poth EM, Zhu H, Blackshaw S
#=GF RL Neural Dev. 2011;6:32.
#=GF WK Six3OS1
#=GF SQ 5

AC166821.2/77138-77330  UGUACCCGGCGCCGCGCCCCCAGAUCUGCAUCGGAAUGUAGAAAAGAUCUUUUUAAAAAAA-----------GUUUUGAAUUCCUCAAUGAUUUUUCUUCUGGAAAGGCAGCUUAGGAUAAUUAUUUCAGCUUUAUUGAGGGCAGAUUAGUUGAAGUCUGGGCGCUGCGUUUCAAUACGCGUUGUACAUGGGCCGACAAU
AC151334.2/6887-6696    CGGGCGCUGCGCC-UGCCCCCAGAUCUCCAUCGGAAUGCAGAAAACAUCUUAGAAAAAAAGU----------AGUUUGAAUUCCUGAAUGAUUUUUCCUGUAGAAAGG-GGCUUAGGAUAAUGAUUUCAGCUUUAUUGAGGGCAGAUUAGUAGCAGUCUCGAUGCUGCCUCUCAAUACGCGCUGUACAUGCCUUUACAAU
AY589792.1/187-1        UGUACCCGGCGCCGCGCCCCCAGAUCUGCAUCGGAAUGUAGAAAAGAUCUUUUUAAAAAAA-----------GUUUUGAAUUCCUCAAUGAUUUUUCUUCUGGAAAGGCAGCUUAGGAUAAUUAUUUCAGCUUUAUUGAGGGCAGAUUAGUUGAAGUCUGGGCGCUGCGUUUCAAUACGCGUUGUACAUGGGCCGACA--
AC236461.1/25148-24947  AGUGCUCUGCACC-UGACCCCAGAUCUCCAUCAGAAUGCAGAAAAGAUUUUAUAAAAAAAAAGAAAACAAGAAGUUUGAAUUCCUGAAUGAUUUUUUUCUGCAGAUAGGGGCUUAGGAUAAUGAUUUGUGCUUUAUUG-GGGCAGAUUAGUCACAGUGUCACUACUGUCUCUCAAUGUGCCCUGUACAUGUCUCUUCAAU
AC012354.11/97619-97819 UGGACACGGCGCCUUGCCCCCAGAUCUGCAUCGGAAUGCAGAAAAGAUCUUUAAAAAAAAAAAAAAAAA---GUUUUGAAUUCCUCAAUGAUUUUUCUUCUGGAAAGGCAGCUUAGGAUAAUUAUUUCAGCUUUAUUGAGGGCAGAUUAGUUGAAGUCUGGGCGCUGCGUUUCAAUACGCGUUGUACACGGGCCGACAAU
#=GC SS_cons            ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..........::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
#=GC RF                 uGugCuCgGCGCCguGcCCCCAGAUCUgCAUCGGAAUGcAGAAAAgAUcUUuuaAAAAAAaa..........guUUUGAAUUCCUgAAUGAUUUUUcuucugGaAaGGcgGCUUAGGAUAAUuAUUUcaGCUUUAUUGAGGGCAGAUUAGUuGaAGUcUgGgcGCUGcgUuUCAAUacGCguUGUACAuGggccgaCAAU

AC166821.2/77138-77330  GUGG
AC151334.2/6887-6696    GUGC
AY589792.1/187-1        ----
AC236461.1/25148-24947  GUGC
AC012354.11/97619-97819 GUGG
#=GC SS_cons            ::::
#=GC RF                 GUGg
//
