INFERNAL1/a [1.1.4 | Dec 2020] NAME Six3os1_3 ACC RF02248 DESC Six3os1 conserved region 3 STATES 229 NODES 77 CLEN 75 W 159 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:54:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.090820 CKSUM 579037811 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 43.70 NC 32.70 EFP7GF -9.8539 0.71862 ECMLC 0.72333 -9.27322 -0.56026 1600000 655027 0.001832 ECMGC 0.42012 -19.73594 -6.91252 1600000 87447 0.004574 ECMLI 0.68284 -7.77156 0.63200 1600000 372631 0.003220 ECMGI 0.45427 -11.57232 -0.66332 1600000 56787 0.007044 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 159 244 -7.359 -7.566 -0.040 -5.980 IL 1 1 2 1 4 2 31 161 246 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 161 245 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 2 30 159 244 -5.725 -0.056 -5.725 1.137 -1.459 -0.036 -1.114 D 4 2 3 5 3 0 25 156 241 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 32 165 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 2 29 158 243 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 7 5 3 8 3 0 25 155 239 -11.551 -1.585 -0.585 IL 8 8 3 8 3 2 31 164 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 28 157 241 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 10 8 3 11 3 0 24 153 238 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 30 163 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 28 155 240 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 13 11 3 14 3 0 23 152 236 -11.551 -1.585 -0.585 IL 14 14 3 14 3 2 29 162 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 27 154 238 -5.725 -0.056 -5.725 -1.241 -1.185 -0.726 1.340 D 16 14 3 17 3 0 22 151 235 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 29 160 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 26 153 237 -5.725 -0.056 -5.725 -1.713 1.425 -1.926 -0.422 D 19 17 3 20 3 0 22 150 234 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 28 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 1 25 151 236 -5.725 -0.056 -5.725 0.098 0.968 -1.290 -0.825 D 22 20 3 23 3 0 21 148 232 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 27 158 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 1 25 150 234 -5.725 -0.056 -5.725 0.925 -1.397 0.306 -1.043 D 25 23 3 26 3 0 20 147 231 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 26 157 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 24 149 233 -5.725 -0.056 -5.725 -1.970 -1.590 -2.142 1.672 D 28 26 3 29 3 0 19 146 229 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 26 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 30 29 3 32 3 1 23 148 231 -5.725 -0.056 -5.725 -0.707 0.285 0.000 0.225 D 31 29 3 32 3 0 19 144 228 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 25 154 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 23 146 230 -5.725 -0.056 -5.725 -1.970 -1.590 -2.142 1.672 D 34 32 3 35 3 0 18 143 226 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 24 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 22 145 228 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 37 35 3 38 3 0 17 142 225 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 23 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 21 144 227 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 40 38 3 41 3 0 16 141 224 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 23 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 20 142 226 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 43 41 3 44 3 0 16 139 222 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 22 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 20 141 224 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 46 44 3 47 3 0 15 138 221 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 21 148 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 19 140 223 -5.725 -0.056 -5.725 -1.970 -1.590 -2.142 1.672 D 49 47 3 50 3 0 14 137 219 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 21 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 18 138 221 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 52 50 3 53 3 0 14 135 218 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 20 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 18 137 220 -5.725 -0.056 -5.725 -0.730 -2.129 1.526 -1.798 D 55 53 3 56 3 0 13 134 216 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 19 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - G - - - ML 57 56 3 59 3 1 17 136 218 -5.725 -0.056 -5.725 -0.827 -2.184 1.556 -1.856 D 58 56 3 59 3 0 12 133 215 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 19 142 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 16 135 217 -5.725 -0.056 -5.725 -1.713 1.425 -1.926 -0.422 D 61 59 3 62 3 0 11 131 213 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 18 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 16 133 215 -5.725 -0.056 -5.725 -1.426 1.098 -1.618 0.216 D 64 62 3 65 3 0 11 130 212 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 17 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - g - - - ML 66 65 3 68 3 1 15 132 214 -5.725 -0.056 -5.725 0.521 -1.460 0.795 -1.102 D 67 65 3 68 3 0 10 129 210 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 16 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 14 131 212 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 70 68 3 71 3 0 10 127 209 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 16 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 14 129 211 -5.725 -0.056 -5.725 -1.763 1.463 -1.978 -0.527 D 73 71 3 74 3 0 9 126 207 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 15 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 13 128 209 -5.725 -0.056 -5.725 -1.970 -1.590 -2.142 1.672 D 76 74 3 77 3 0 8 125 206 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 15 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 12 127 208 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 79 77 3 80 3 0 8 123 204 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 14 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 81 80 3 83 3 1 12 125 206 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 82 80 3 83 3 0 7 122 203 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 13 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 11 124 205 -5.725 -0.056 -5.725 -0.520 -0.776 1.146 -0.982 D 85 83 3 86 3 0 6 121 201 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 13 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 87 86 3 89 3 1 10 123 203 -5.725 -0.056 -5.725 -0.631 -2.073 1.494 -1.738 D 88 86 3 89 3 0 6 119 200 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 12 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 90 89 3 92 3 1 10 121 202 -5.725 -0.056 -5.725 1.320 -1.594 -0.406 -1.262 D 91 89 3 92 3 0 5 118 198 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 11 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - G - - - ML 93 92 3 95 3 1 9 120 200 -5.725 -0.056 -5.725 -0.991 -1.267 1.035 0.046 D 94 92 3 95 3 0 5 117 197 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 11 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - C - - - ML 96 95 3 98 3 1 9 118 199 -5.725 -0.056 -5.725 -1.565 1.285 -1.766 -0.102 D 97 95 3 98 3 0 4 115 195 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 10 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 99 98 3 101 3 1 8 117 197 -5.725 -0.056 -5.725 -1.970 -1.590 -2.142 1.672 D 100 98 3 101 3 0 3 114 194 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 10 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 102 101 3 104 3 1 7 116 196 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 103 101 3 104 3 0 3 112 192 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 9 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - - - ML 105 104 3 107 3 1 7 114 194 -5.725 -0.056 -5.725 -1.749 1.453 -1.964 -0.499 D 106 104 3 107 3 0 2 111 191 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 8 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - u - - - ML 108 107 3 110 3 1 6 113 193 -5.725 -0.056 -5.725 -0.281 -0.864 0.278 0.501 D 109 107 3 110 3 0 2 110 189 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 8 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - - - ML 111 110 3 113 3 1 6 112 191 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 112 110 3 113 3 0 1 108 188 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 7 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - g - - - ML 114 113 3 116 3 1 5 110 190 -5.725 -0.056 -5.725 -0.245 -0.407 0.845 -0.723 D 115 113 3 116 3 0 1 107 186 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 7 117 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 117 116 3 119 3 1 5 109 188 -5.725 -0.056 -5.725 1.316 -1.299 -1.329 -0.503 D 118 116 3 119 3 0 0 106 184 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 6 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 120 119 3 122 3 1 4 107 186 -5.725 -0.056 -5.725 -0.336 -1.905 1.379 -1.560 D 121 119 3 122 3 0 0 104 183 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 6 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 123 122 3 125 3 1 4 106 185 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 124 122 3 125 3 0 0 103 181 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 5 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - U - - - ML 126 125 3 128 3 1 3 105 183 -5.725 -0.056 -5.725 -1.970 -1.590 -2.142 1.672 D 127 125 3 128 3 0 0 101 180 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 5 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 129 128 3 131 3 1 3 103 182 -5.725 -0.056 -5.725 -1.970 -2.817 1.778 -2.537 D 130 128 3 131 3 0 0 100 178 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 4 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 132 131 3 134 3 1 3 102 180 -5.725 -0.056 -5.725 -1.194 -1.660 1.391 -0.682 D 133 131 3 134 3 0 0 98 176 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 4 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 135 134 3 137 3 1 2 100 178 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 136 134 3 137 3 0 0 97 175 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - C - - - ML 138 137 3 140 3 1 2 99 177 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 139 137 3 140 3 0 0 96 173 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 3 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - A - - - ML 141 140 3 143 3 1 2 97 175 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 142 140 3 143 3 0 0 94 171 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 3 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - C - - - ML 144 143 3 146 3 1 1 96 174 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 145 143 3 146 3 0 0 93 170 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 147 146 3 149 3 1 1 95 172 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 148 146 3 149 3 0 0 91 168 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - C - - - ML 150 149 3 152 3 1 1 93 170 -5.725 -0.056 -5.725 -1.410 1.311 -0.617 -1.025 D 151 149 3 152 3 0 0 90 166 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 2 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - A - - - ML 153 152 3 155 3 1 1 92 169 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 154 152 3 155 3 0 0 88 165 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 2 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - A - - - ML 156 155 3 158 3 1 1 90 167 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 157 155 3 158 3 0 0 87 163 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - A - - - ML 159 158 3 161 3 1 1 89 165 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 160 158 3 161 3 0 0 85 161 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 96 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 162 161 3 164 3 1 1 87 163 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 163 161 3 164 3 0 0 84 159 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - c - - - ML 165 164 3 167 3 1 1 86 162 -5.725 -0.056 -5.725 -0.392 0.527 -0.141 -0.168 D 166 164 3 167 3 0 0 82 158 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - C - - - ML 168 167 3 170 3 1 1 84 160 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 169 167 3 170 3 0 0 81 156 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - - - ML 171 170 3 173 3 1 1 83 158 -5.725 -0.056 -5.725 0.879 -0.433 -0.418 -0.573 D 172 170 3 173 3 0 0 79 154 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 90 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 174 173 3 176 3 1 1 81 156 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 175 173 3 176 3 0 0 77 152 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - A - - - ML 177 176 3 179 3 1 1 79 154 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 178 176 3 179 3 0 0 76 150 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - A - - - ML 180 179 3 182 3 1 1 78 153 -5.725 -0.056 -5.725 1.302 -0.650 -1.334 -0.999 D 181 179 3 182 3 0 0 74 148 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - G - - - ML 183 182 3 185 3 1 1 76 151 -5.725 -0.056 -5.725 -0.631 -2.073 1.494 -1.738 D 184 182 3 185 3 0 0 73 147 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 84 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - C - - - ML 186 185 3 188 3 1 1 75 149 -5.725 -0.056 -5.725 -2.236 1.708 -2.452 -1.567 D 187 185 3 188 3 0 0 71 145 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - C - - - ML 189 188 3 191 3 1 1 73 147 -5.725 -0.348 -2.355 -0.576 1.334 -1.634 -1.039 D 190 188 3 191 3 0 0 70 143 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - g - - - ML 192 191 3 194 3 1 1 71 145 -5.445 -0.068 -5.445 -0.251 -0.603 0.894 -0.638 D 193 191 3 194 3 0 0 69 142 -13.591 -0.255 -2.625 IL 194 194 3 194 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - A - - - ML 195 194 3 197 3 1 1 70 143 -5.725 -0.056 -5.725 1.190 -1.489 -0.134 -1.147 D 196 194 3 197 3 0 0 66 138 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - A - - - ML 198 197 3 200 3 1 1 68 141 -5.725 -0.056 -5.725 1.337 -1.611 -0.445 -1.280 D 199 197 3 200 3 0 0 64 136 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 77 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - G - - - ML 201 200 3 203 3 1 1 66 138 -5.725 -0.056 -5.725 -0.659 -2.090 1.504 -1.756 D 202 200 3 203 3 0 0 62 134 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - U - - - ML 204 203 3 206 3 1 1 64 136 -5.725 -0.056 -5.725 -1.275 0.189 -1.456 1.058 D 205 203 3 206 3 0 0 60 131 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - U - - - ML 207 206 3 209 3 1 1 62 134 -5.725 -0.056 -5.725 -1.970 -1.590 -2.142 1.672 D 208 206 3 209 3 0 0 57 129 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - G - - - ML 210 209 3 212 3 1 1 60 131 -5.725 -0.056 -5.725 -1.207 -0.870 1.394 -1.350 D 211 209 3 212 3 0 0 55 126 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - G - - - ML 213 212 3 215 3 1 1 58 128 -5.725 -0.056 -5.725 -1.205 -1.681 1.404 -0.720 D 214 212 3 215 3 0 0 52 122 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 72 - g - - - ML 216 215 3 218 3 1 1 55 125 -5.725 -0.056 -5.725 0.210 -0.559 0.606 -0.637 D 217 215 3 218 3 0 0 49 119 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 73 - A - - - ML 219 218 3 221 3 1 1 52 122 -5.725 -0.056 -5.725 1.231 -0.489 -1.273 -0.926 D 220 218 3 221 3 0 0 44 114 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 74 - A - - - ML 222 221 3 224 3 1 1 48 117 -5.725 -0.056 -5.725 1.780 -2.576 -2.310 -2.343 D 223 221 3 224 3 0 0 32 101 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 75 - A - - - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.337 -1.611 -0.445 -1.280 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 76 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Six3os1_3 ACC RF02248 DESC Six3os1 conserved region 3 LENG 75 MAXL 159 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:54:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 3.090820 STATS LOCAL MSV -8.7273 0.71862 STATS LOCAL VITERBI -9.2553 0.71862 STATS LOCAL FORWARD -3.6691 0.71862 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24120 1.45422 1.25469 1.64914 1.38629 1.38629 1.38629 1.38629 0.02266 5.10100 4.11582 0.39730 1.11515 0.00000 * 1 0.59828 2.39760 1.41149 2.15825 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 2 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 3 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 4 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 5 2.24628 2.20736 1.88925 0.45723 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 6 2.57390 0.39850 2.72104 1.67862 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 7 1.31809 0.71547 2.28054 1.95786 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 8 0.74534 2.35432 1.17391 2.10936 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 9 2.75156 2.48846 2.87120 0.22752 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 10 1.87651 1.18857 1.38638 1.23018 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 11 2.75156 2.48846 2.87120 0.22752 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 12 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 13 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 14 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 15 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 16 2.75156 2.48846 2.87120 0.22752 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 17 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 18 1.89201 2.86216 0.32825 2.63245 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 19 1.95930 2.89981 0.30794 2.67294 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 20 2.57390 0.39850 2.72104 1.67862 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 21 2.37487 0.62515 2.50809 1.23661 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 22 1.02494 2.39821 0.83508 2.15020 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 23 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 24 2.60809 0.37193 2.75762 1.75171 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 25 2.75156 2.48846 2.87120 0.22752 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 26 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 27 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 28 1.74674 1.92433 0.59222 2.06682 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 29 1.82344 2.82350 0.35070 2.59109 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 30 0.47116 2.49101 1.66801 2.26071 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 31 2.07296 2.26452 0.66895 1.35456 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 32 2.47085 0.49571 2.61066 1.45730 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 33 2.75156 2.48846 2.87120 0.22752 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 34 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 35 2.59882 0.37891 2.74771 1.73186 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 36 1.58108 1.98486 1.19388 1.03901 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 37 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 38 1.55642 1.66869 0.80043 1.88730 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 39 0.47406 2.28684 2.30720 1.73499 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 40 1.61938 2.70675 0.43011 2.46758 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 41 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 42 2.75156 2.48846 2.87120 0.22752 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 43 2.75160 3.33871 0.15359 3.14506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 44 2.21380 2.53724 0.42182 1.85931 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 45 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 46 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 47 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 48 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 49 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 50 2.36374 0.47791 1.81425 2.09643 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 51 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 52 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 53 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 54 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 55 1.65814 1.02086 1.48410 1.50277 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 56 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 57 0.77722 1.68642 1.67636 1.78330 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 58 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 59 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 60 0.48395 1.83662 2.31073 2.07857 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 61 1.82344 2.82350 0.35070 2.59109 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 62 2.93600 0.20232 3.08578 2.47230 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 63 1.78523 0.46193 2.51898 2.10675 - C - - : 1.38629 1.38629 1.38629 1.38629 0.24120 3.96856 1.63263 1.46634 0.26236 1.09861 0.40547 64 1.56035 1.80414 0.76636 1.82872 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04699 3.77435 3.77435 1.46634 0.26236 0.17684 1.81963 65 0.56171 2.41841 1.47931 2.18116 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 66 0.45967 2.50263 1.69456 2.27344 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 67 1.84341 2.83479 0.34397 2.60315 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 68 2.27009 1.25520 2.39563 0.65284 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 69 2.75156 2.48846 2.87120 0.22752 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 70 2.22279 1.98925 0.42034 2.32207 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 71 2.22143 2.55169 0.41282 1.88507 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 72 1.24091 1.77407 0.96633 1.82783 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 73 0.53290 1.72554 2.26842 2.02841 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 74 0.15271 3.17192 2.98733 3.01023 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 75 0.45967 2.50263 1.69456 2.27344 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99936 0.00000 * //