# STOCKHOLM 1.0
#=GF ID Six3os1_1
#=GF AC RF02246
#=GF DE Six3os1 conserved region 1
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 47.7
#=GF TC 52.5
#=GF SE Predicted; ClustalW
#=GF SS Predicted; RNAalifold
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 22.64 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF DR GO; 0010468; regulation of gene expression;
#=GF RN [1]
#=GF RM 21936910
#=GF RT The long noncoding RNA Six3OS acts in trans to regulate retinal
#=GF RT development by modulating Six3 activity.
#=GF RA Rapicavoli NA, Poth EM, Zhu H, Blackshaw S
#=GF RL Neural Dev. 2011;6:32.
#=GF WK Six3OS1
#=GF SQ 9

AY589790.1/604-517         UCCUUGGCUUCCUGUACAUCUCUGUGCGUGUCU-GGGCGUCACUCCA--AG--CGGACAUGGUAGCUUUUGUCUGCAUCU-GGACAACAAGGUG
ABRR01379223.1/276-356     ----UGGCUUCCUGCACAUCUGCC--UGUGGCU-AGG-GUCACUCCG--CG--CGGGCACUGUGGCUUUUGUCUGCAUCU-GCACAACUAGAUG
AAWR02004034.1/5244-5162   ----UGGCUUCCUGCACAUCUGCUCGCGUGGCU-GGG-GUCACUCUG--CG--CGGGCACUGCCGCUUUCGUCUGCAUCU-GGACAACUGGGUA
AAFC03054895.1/55173-55259 UAUGUGGCUUCCUGCACACCUGCCUG--UGGCU-GGG-UUCACUCCGAG--CGCGGGCACUGCGGCUUUUGUCUGCAUCU-GCACAACUGGGUG
AANU01292492.1/7077-7163   UUCGCGGCUUCCUGUACAUCUGCCCUUGUGGUU-GGG-GUCACUCCU--CG--CGGGCACUGUGGUUUUUGUCUGCAUCU-GGACAACUGGGUG
AAKN02023921.1/63796-63883 UGCGCAGCUUCCUGUACAUCUGCCUGCAUGUGU-GGG-GUCAAUCCA--UG--UGGGCACUGAGCCUUUUGUCUGCGUCUUAGACAACUGAGAG
ABRN01211795.1/141-225     UAGGUGGUUUCCUGCACAUCUGCC--UGUGGCU-GGG-GUCACUCCG--CG--CGGGCACUGCGGCUUUUGUCCGCAUCU-GGACAACUGGAUG
AC012354.11/89894-89980    UUCACGGCUUCCUGUACAUCUGCCCUUGUGGUU-GGG-GUCACUCCU--CG--CAGGCACUGUGGCUUUUGUCUGCAUCU-GGACAACAGGGUG
AAGU03061906.1/13962-14048 GGUGCGGUUUCCUGUAAGUCGGCCCGUGUGGCUGAGG-GUCACUCCG--CG--CGGGCACUGCAGCUUUUGUCAGCAUCU-GGACA-CCUGCCU
#=GC SS_cons               :::::::::::::::::::::::::::::::::.:::.:::::::::..::..:::::::::::::::::::::::::::.:::::::::::::
#=GC RF                    UgcguGGCUUCCUGuACAUCUGCccGuGUGGcU.GGG.GUCACUCCg..cG..CGGGCACUGugGCUUUUGUCuGCAUCU.GGACAACugGguG
//
