# STOCKHOLM 1.0
#=GF ID Xoo5
#=GF AC RF02242
#=GF DE Xanthomonadaceae sRNA Xoo5
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 49.3
#=GF TC 50.4
#=GF SE Predicted; ClustalW
#=GF SS Predicted; RNAalifold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.05 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 21276262
#=GF RT Identification and functional characterization of small non-coding RNAs in
#=GF RT Xanthomonas oryzae pathovar oryzae.
#=GF RA Liang H, Zhao YT, Zhang JQ, Wang XJ, Fang RX, Jia YT
#=GF RL BMC Genomics. 2011;12:87.
#=GF WK Xanthomonas_sRNA
#=GF SQ 3

CP000967.1/2045785-2045908 CUAUGCAAGCAAACGCCUUUCAGCACGACACCAGCGCCGCCCGGAUGGCCUCCGGCAUGACAUCGCGUGCCCGCCGACCGGAAUCCCACAUUUUCGCUGGGUAAGCCGGGGCGUU-UGCUGUUCC
CP000050.1/2262883-2263006 CUAUGCACGCAAACGCCUUUCAGCACGACAGCAGCGCCGCCCGGAUGGCCUCCGGCAUGACGUCGCGUGCCCGCCAACCGGAAUCCCACAUUUUCGCUGGGUAA-CCGGAGCGUUUUGCUGCCUG
AATO01000195.1/985-1108    UCAUGAACGCCGACCUGCAGCCACACGCCGCCAGCGCCGCCCGGAUGGCCUCCGGGAUGACCUCGCGCGCGCGCCGACCGGAACCCCGCCAUUCCGCUGGGUGA-CCGGGGCGUCCUGCCGUCCG
#=GC SS_cons               ::::::::::::::::::::::::::::::((((((-(((((<<-<<<<----<<<<<<______>>>>>>->>>>->><<---<<<<<______>->>>>---.>>))-)))---)))))):::
#=GC RF                    cuAUGcAcGCaaACgccuuuCagCACGaCagCaGCgCCGCCCGGAcGGCCUCCgGcauGACaUCGCgugCcCGCCgACCGGAAuCCCaCauUUuCGCuGGGUaA.CCGGgGCGUuuuGCuGcccg
//
