# STOCKHOLM 1.0
#=GF ID asX6
#=GF AC RF02239
#=GF DE Xanthomonas sRNA asX6
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 43.0
#=GF TC 89.7
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.15 -Z 2958934 CM SEQDB
#=GF DR SO; 0000644; antisense_RNA;
#=GF RN [1]
#=GF RM 22080557
#=GF RT Genome-wide transcriptome analysis of the plant pathogen Xanthomonas
#=GF RT identifies sRNAs with putative virulence functions.
#=GF RA Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J,
#=GF RA Stadler PF, Bonas U
#=GF RL Nucleic Acids Res. 2011;0:0-0.
#=GF WK Xanthomonas_sRNA
#=GF SQ 3

AY228335.1/27728-27819   CCACCUACUGAUGUGUCACAUGGUCUGUUUC-UUGUACAAGUUCGCACCGGGUUAGGCGAGGU-GUAGGGCGGCUCCUUCAACCUCGCCGCUUG
AM039951.1/109851-109943 AGCCCUACGGAUGUGCCACAUGGUCUGUUUCCUUGUACAAGUUCGCAC-GGGUUAGGCGGGGUUGUAGGGCGGCUCCUUCAACCUCGCCGCUUA
AE008925.1/50049-50141   AGCCCUACGGAUGUGCCACAUGGUCUGUUUCCUUGUACAAGUUCGCAC-GGGUUAGGCGGGGUUGUAGGGCGGCUCCUUCAACCUCGCCGCUUA
#=GC SS_cons             <<<<<--<<<<<-<<--<<<-<<_______>>->>>->>->>>>>---.>>>>>:<<<<<<<<<<-<<<<____>>>>->>>>>>>>>>:::::
#=GC RF                  agcCCUACggacGuGcCaCaUGGUCUGUUUCCUuGuACaAguccGCAC.GGgcuAGGCGgGGuuGUaGGgCGGCcCCuUCaaCCcCGCCGCUUa
//
