# STOCKHOLM 1.0
#=GF ID asX3
#=GF AC RF02237
#=GF DE Xanthomonas sRNA asX3
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 40.0
#=GF NC 37.5
#=GF TC 40.6
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.17 -Z 2958934 CM SEQDB
#=GF DR SO; 0000644; antisense_RNA;
#=GF RN [1]
#=GF RM 22080557
#=GF RT Genome-wide transcriptome analysis of the plant pathogen Xanthomonas
#=GF RT identifies sRNAs with putative virulence functions.
#=GF RA Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J,
#=GF RA Stadler PF, Bonas U
#=GF RL Nucleic Acids Res. 2011;0:0-0.
#=GF WK Xanthomonas_sRNA
#=GF SQ 4

AP008229.1/605165-604984   AUCGGCGAUCAGCCGUGGUGCUGAGCGGCUUUGGCAACGCGAGCGAUUGCACUGCUCAAUUCAAUGACGACGACCACGUUCGGCAAGGCGUCGCCGAUCAUCACCCCCGCGCUCGAUACGGCGGAUCGUGCUCAGCGUUGCGCCGGUCCCCAGUAGCCCAACUCGCGACGGAUCUGCAACCC
AM039952.1/4498825-4499001 AUCCGCGAUCAGCCUUGGUGCUGCUCGUCAGUCGCAAUCCGGGUCAGUGAUCUGAUCAAU--GACAAGGACG--UAAGUUCGGCAAAACGUCGCCGAUCAUCACCACC-CGCUCGUUGCCGCUGAUCGCGCUCAGCGCUGCGCCGGCCCCCAGUAGCCCAACUCGCGACGGAUCUGCAACCC
CP000967.1/709789-709608   AUCGGCGAUCAGCCGUGGUGCUGAGCGGCUUUGGCAACGCGAGCGAUUGCACUGCUCAAUUCAAUGACGACGACCACGUUCGGCAAGGCGUCGCCGAUCAUCACCCCCGCGCUCGAUACGGCGGAUCGUGCUCAGCGUUGCGCCGGUCCCCAGUAGCCCAACUCGCGACGGAUCUGCAACCC
AE013598.1/617186-617005   AUCGGCGAUCAGCCGUGGUGCUGAGCGGCUUUGGCAACGCGAGCGAUUGCACUGCUCAAUUCAAUGACGACGACCACGUUCGGCAAGGCGUCGCCGAUCAUCACCCCCGCGCUCGAUACGGCGGAUCGUGCUCAGCGUUGCGCCGGUCCCCAGUAGCCCAACUCGCGACGGAUCUGCAACCC
#=GC SS_cons               (((((((((--(((----(((((((((<<----<<<<<<____>>->>>>--->><<________>>,,,,,,,,,)))))))))-))))))))))))::::::::((((((,,,,,,,<<-<<<<<<<<<________>>>>->>>>>>>,<<______>>,,)))-))):::::::::::
#=GC RF                    auCgGCGauCAGccgUGGuGCuGagCggCuuUggCaacgCGaGcgAuuGcaCUGcucAAUUcaAugacGACGAccAcGcuCgGCaAggCguCGCcGauCAUCACCcCCGCGCUCGaUaCgGCgGauCGcGCUCAGCGuUGCgCCGguCcCcAGuAGCCCAaCUCGCGACGGAUCUGCAACCC
//
