# STOCKHOLM 1.0
#=GF ID sX14
#=GF AC RF02233
#=GF DE Xanthomonas sRNA sX14/Xoo3
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 80.0
#=GF NC 63.0
#=GF TC 115.5
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.26 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 22080557
#=GF RT Genome-wide transcriptome analysis of the plant pathogen Xanthomonas
#=GF RT identifies sRNAs with putative virulence functions.
#=GF RA Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J,
#=GF RA Stadler PF, Bonas U
#=GF RL Nucleic Acids Res. 2011;0:0-0.
#=GF RN [2]
#=GF RM 21276262
#=GF RT Identification and functional characterization of small non-coding RNAs in
#=GF RT Xanthomonas oryzae pathovar oryzae.
#=GF RA Liang H, Zhao YT, Zhang JQ, Wang XJ, Fang RX, Jia YT
#=GF RL BMC Genomics. 2011;12:87.
#=GF WK Xanthomonas_sRNA
#=GF SQ 8

AM920689.1/4930438-4930347 GUCCGAUGUCAGUCGGAAGUUGUGCCACGCAUUGUCCACCGGGCUUGUCCCGGUUUUUGAAGGGAUCGGGCCUUGUGCCCGAUCCUUUUUUU
AM039952.1/5040690-5040599 GUCCGAUGUCAGUCGGAAGCUGUGCCACUCAUUGUCCACCGGGCUUGUCCCGGUUUUCGAAGGGAUCGGGCCUUGUGUCCGAUCCUUUUUUU
CP000967.1/250669-250760   GUCCGAUGUCAGUCGGAAGCUGUGCCACUCAUUGUCCACCGGGCUUGCCCCGGUUUUCGAAGGGAUCGCGCCUUGUGCCCGAUCCUUUUUUU
AE013598.1/260825-260916   GUCCGAUGUCAGUCGGAAGCUGUGCCACUCAUUGUCCACCGGGCUUGCCCCGGUUUUCGAAGGGAUCGCGCCUUGUGCCCGAUCCUUUUUUU
AE008922.1/4927229-4927138 GUCCGAUGUCAGUCGGAAGUUGUGCCACGCAUUGUCCACCGGGCUUGUCCCGGUUUUUGAAGGGAUCGGGCCUUGUGCCCGAUCCUUUUUUU
AE008923.1/5051592-5051501 GUCCGAUGUCAGUCGGAAGCUGUGUCACUCAUUGUCCACCGGGCGUGUCCCGGUUUUCGAAGGGAUCGCGCCUCGUGCCCGAUCCUUUUUUU
AP008229.1/247574-247665   GUCCGAUGUCAGUCGGAAGCUGUGCCACUCAUUGUCCACCGGGCUUGCCCCGGUUUUCGAAGGGAUCGCGCCUUGUGCCCGAUCCUUUUUUU
CP000050.1/5001412-5001321 GUCCGAUGUCAGUCGGAAGUUGUGCCACGCAUUGUCCACCGGGCUUGUCCCGGUUUUUGAAGGGAUCGGGCCUUGUGCCCGAUCCUUUUUUU
#=GC SS_cons               :<<<<<<____>>>>>>::::<<<_____>>>:::::<<<<<<_____>>>>>>::::<<<<<<<<<<-<<_____>>->>>>>>>>>>:::
#=GC RF                    GuCCGauGUCAguCGGaAGcUguGcCACuCauUGUCCaCCGGGCuUGuCCCGGuUUUcgaagGGauCGgGCCUUGUGCCCGauCCuuuuUUU
//
