# STOCKHOLM 1.0
#=GF ID sX13
#=GF AC RF02232
#=GF DE Xanthomonadaceae sRNA sX13
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 49.9
#=GF TC 50.2
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.65 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 22080557
#=GF RT Genome-wide transcriptome analysis of the plant pathogen Xanthomonas
#=GF RT identifies sRNAs with putative virulence functions.
#=GF RA Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J,
#=GF RA Stadler PF, Bonas U
#=GF RL Nucleic Acids Res. 2011;0:0-0.
#=GF WK Xanthomonas_sRNA
#=GF SQ 12

AM920689.1/4756283-4756169 AACGCCUGUC-GGCAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCCUCCCCAAGUUUCCGUUCCCUGGCCCCGCCGACCU--CCCCCUGGUCUGCGGGGCUUUUUA
AM039952.1/4810196-4810082 AACGCCUGUC-GGUAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCCUCCCCAAGUUUCCGUUCCCUGGCCCCGCCGACCU--CCCCCUGGUCUGCGGGGCUUUUUA
CP000967.1/575770-575884   AACGCCUGUC-GGCAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCAUCCCCAAGUUCCCGCUCCCUGGCCCCGCCGACCU--CCCCCUGGUCUGCGGGGCUUUUUA
AE013598.1/4515226-4515112 AACGCCUGUC-GGCAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCAUCCCCAAGUUCCCGCUCCCUGGCCCCGCCGACCU--CCCCCUGGUCUGCGGGGCUUUUUA
AE008923.1/4814948-4814834 AAUGCCUGUC-GGCAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCCUCCCCAAGUUUCCGUUCCCUGGCCCCGCCGACCU--CCCCCUGGUCUGCGGGGCUUUUUU
AE008922.1/4765833-4765719 AACGCCUGUC-GGCAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCCUCCCCAAGUUUCCGUUCCCUGGCCCCGCCGACCU--CCCCCUGGUCUGCGGGGCUUUUUA
AP008229.1/4512673-4512559 AACGCCUGUC-GGCAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCAUCCCCAAGUUCCCGCUCCCUGGCCCCGCCGACCU--CCCCCUGGUCUGCGGGGCUUUUUA
CP000050.1/4839952-4839838 AACGCCUGUC-GGCAGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAGCGGAAACUCCUCCCCAAGUUUCCGUUCCCUGGCCCCGCCGACCU--UUCCCUGGUCUGCGGGGCUUUUUA
CP001111.1/4436013-4435900 AACGCCUGUU-G-UGGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAACGGGGACUCCUCCCCAAGUGCCCGUUCCCCGGCCCCGUUGACCU--CCCCCUGGUCAGCGGGGCUUUUUA
AM743169.1/4710929-4710816 AACGCCUGUU-G-UGGAUCUC-UCC-CAUCCCCUGGAGCAGAUCU--CGGAACGGGGACUCCUCCCCAAGUGCCCGUUCCCCGGCCCCGUUGACCU--CCCCCUGGUCAGCGGGGCUUUUUA
AE003849.1/1055829-1055946 AAUGCUUGCCUGUAGGAUCUC-UCCUAAUCCCCUGGAGAAGAUCGU-UGGAGCGGGGAUUCAUCCCCAA-UCCCCGCUUC-UGGCCUCGCCGACCUAAUCCCCUGGUCAGCGAGGCUUUUUA
AATO01005714.1/691-804     AACGCCUGUC-G-CGGAUCUCCUCC-CUUCCCCUGGAGCAGAUCCACCGGGGCCGG-ACUCCUCCCCAAGU--CCGGCUCCCCGCCCCGCCCGGCU--CCCCCUGCCCGGCGGGGCUUUUUU
#=GC SS_cons               :::<<<____.>>><<<<<<<.<<<.________>>>>->>>>>>..:<<<<<<<<<<<<________>>>>>>>>>>>>::<<<<<<<<-<<<<_..______>>>>->>>>>>>>:::::
#=GC RF                    AAcgccUGUc.ggcgGauCuC.uCC.cAUCCCCUGGaGcaGauCc..cGGagCGGggaCuCcUCCCCAaGuccCCGcuCCCugGCCcCGccGacCU..ccCCCUGguCugCGgGGCcUUUUa
//
