INFERNAL1/a [1.1.5 | Sep 2023] NAME sX8 ACC RF02227 DESC Proteobacterial sRNA sX8 STATES 255 NODES 63 CLEN 82 W 98 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 10:01:54 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02227/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 1.872070 CKSUM 3577359433 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 56.10 NC 42.90 EFP7GF -9.3617 0.71889 ECMLC 0.60895 -8.67502 1.11362 1600000 465488 0.002578 ECMGC 0.43470 -15.67573 -3.72316 1600000 72203 0.005540 ECMLI 0.57443 -7.17871 2.59796 1600000 329765 0.003639 ECMGI 0.46910 -10.58561 -0.16364 1600000 53124 0.007530 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 98 118 -6.843 -8.088 -0.082 -4.542 IL 1 1 2 1 4 2 31 100 120 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 32 100 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 82 - a - - MR 3 2 3 5 3 4 31 98 119 -8.334 -0.019 -6.652 0.825 -0.917 -1.047 0.281 D 4 2 3 5 3 0 28 97 117 -6.390 -1.568 -0.620 IR 5 5 3 5 3 3 31 99 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 81 - A - - MR 6 5 3 8 3 3 30 97 118 -8.334 -0.019 -6.652 1.192 -0.931 -0.825 -0.676 D 7 5 3 8 3 0 28 96 116 -6.390 -1.568 -0.620 IR 8 8 3 8 3 2 30 98 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 80 - A - - MR 9 8 3 11 3 2 29 96 117 -8.334 -0.019 -6.652 1.709 -2.327 -1.964 -1.865 D 10 8 3 11 3 0 27 95 115 -6.390 -1.568 -0.620 IR 11 11 3 11 3 2 29 97 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 79 - C - - MR 12 11 3 14 2 1 28 95 115 -8.330 -0.004 -1.688 1.610 -2.510 -1.113 D 13 11 3 14 2 0 27 95 115 -4.432 -0.068 IR 14 14 3 14 2 1 28 96 116 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 5 ] - - - - - - B 15 14 3 16 87 0 27 94 114 [ BEGL 6 ] - - - - - - S 16 15 1 17 4 0 0 37 56 -0.075 -6.822 -4.913 -6.869 [ MATP 7 ] 1 23 C G - - MP 17 16 1 21 6 2 2 37 56 -9.077 -9.016 -0.022 -7.792 -8.072 -8.467 -4.398 -4.290 -4.113 -0.537 -2.865 -4.545 3.502 -3.660 -4.158 -0.274 -4.435 -2.236 0.664 -4.477 -0.569 -3.003 ML 18 16 1 21 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 1 21 6 1 1 35 54 -7.217 -5.946 -1.854 -5.924 -0.673 -4.137 0.195 -0.680 0.426 -0.171 D 20 16 1 21 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 2 22 U A - - MP 23 22 6 27 6 2 2 35 54 -9.077 -9.016 -0.022 -7.792 -8.072 -8.467 -4.034 -3.854 -3.889 -0.161 -2.866 -4.468 1.459 -3.550 -3.896 0.118 -4.277 -1.758 3.248 -4.191 -0.545 -2.735 ML 24 22 6 27 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 33 52 -7.217 -5.946 -1.854 -5.924 -0.673 -4.137 0.785 -0.676 -0.395 -0.167 D 26 22 6 27 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 3 21 u a - - MP 29 28 6 33 6 2 2 33 52 -9.077 -9.016 -0.022 -7.792 -8.072 -8.467 -3.553 -3.499 -3.481 0.150 -2.550 -4.096 1.751 -3.223 -3.502 0.410 -3.917 -1.538 2.866 -3.720 0.625 -2.394 ML 30 28 6 33 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 31 50 -7.217 -5.946 -1.854 -5.924 -0.673 -4.137 0.785 -0.676 -0.395 -0.167 D 32 28 6 33 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 4 20 C G - - MP 35 34 6 39 6 2 2 31 50 -9.077 -9.016 -0.022 -7.792 -8.072 -8.467 -4.398 -4.290 -4.113 -0.537 -2.865 -4.545 3.502 -3.660 -4.158 -0.274 -4.435 -2.236 0.664 -4.477 -0.569 -3.003 ML 36 34 6 39 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 29 48 -7.217 -5.946 -1.854 -5.924 -0.673 -4.137 0.195 -0.680 0.426 -0.171 D 38 34 6 39 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 5 19 G C - - MP 41 40 6 45 6 2 2 29 48 -9.077 -9.016 -0.022 -7.792 -8.072 -8.467 -4.253 -2.833 -4.314 0.571 -4.868 -4.552 -0.275 -4.636 -4.050 3.485 -4.424 -0.020 -0.583 -4.129 -2.283 -3.208 ML 42 40 6 45 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 27 46 -7.217 -5.946 -1.240 -5.924 -1.058 -4.137 0.071 -0.385 -0.522 0.572 D 44 40 6 45 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 6 18 C G - - MP 47 46 6 51 6 2 2 27 46 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.896 -3.854 -3.702 -0.116 -2.539 -4.198 3.183 -3.293 -3.728 0.120 -4.071 -1.864 1.069 -3.999 0.707 -2.588 ML 48 46 6 51 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 17 u a - - MP 53 52 6 57 6 2 2 25 44 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.436 -3.419 -3.361 0.190 -2.428 -3.964 1.842 -3.107 -3.388 0.414 -3.798 -1.507 2.221 -3.607 1.935 -2.308 ML 54 52 6 57 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 16 g c - - MP 59 58 6 63 6 2 2 23 42 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -1.440 -1.180 -2.954 1.201 -3.283 -3.680 0.744 -3.374 -3.109 2.887 -3.548 -0.090 0.500 -2.973 -1.052 -2.027 ML 60 58 6 63 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 15 c g - - MP 65 64 6 69 4 2 2 21 40 -6.924 -7.131 -0.054 -5.545 -0.843 -1.777 -1.219 1.381 -1.312 -2.656 1.549 -2.149 -1.882 1.310 -2.447 0.299 1.322 -1.946 -0.000 -1.059 ML 66 64 6 69 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 68 64 6 69 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 69 69 5 69 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 70 70 6 70 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 10 - u - - - ML 71 70 6 73 3 1 1 18 36 -7.942 -0.021 -6.596 -0.070 0.051 -0.765 0.509 D 72 70 6 73 3 0 0 17 36 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 11 - C - - - ML 74 73 3 76 3 1 1 16 35 -7.942 -0.021 -6.596 -0.742 1.116 -0.991 -0.451 D 75 73 3 76 3 0 0 16 34 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 12 - A - - - ML 77 76 3 79 3 1 1 15 33 -7.942 -0.021 -6.596 1.301 -0.877 -1.265 -0.795 D 78 76 3 79 3 0 0 15 33 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - C - - - ML 80 79 3 82 3 1 1 13 31 -7.942 -0.021 -6.596 -0.664 1.261 -1.746 -0.568 D 81 79 3 82 3 0 0 13 32 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - c - - - ML 83 82 3 85 2 1 1 1 1 * 0.000 -0.624 0.987 -0.735 -0.381 D 84 82 3 85 2 0 0 0 0 * 0.000 IL 85 85 3 85 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 86 85 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 87 15 1 88 3 0 12 71 91 -7.942 -0.021 -6.596 IL 88 88 2 88 3 1 12 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - A - - - ML 89 88 2 91 3 1 12 71 91 -7.942 -0.021 -6.596 1.709 -2.327 -1.964 -1.865 D 90 88 2 91 3 0 6 69 89 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 11 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 92 91 3 94 3 1 11 70 90 -7.942 -0.021 -6.596 1.709 -2.327 -1.964 -1.865 D 93 91 3 94 3 0 5 68 88 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 10 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - A - - - ML 95 94 3 97 3 1 10 69 89 -7.942 -0.021 -6.596 1.416 -1.493 -1.409 -0.736 D 96 94 3 97 3 0 5 67 87 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 10 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 98 97 3 100 3 1 10 68 87 -7.942 -0.021 -6.596 -0.382 -1.912 1.359 -1.317 D 99 97 3 100 3 0 4 66 86 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 9 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - u - - - ML 101 100 3 103 5 1 9 67 86 -7.074 -0.040 -6.890 -7.102 -7.994 -0.025 -0.788 -0.238 0.669 D 102 100 3 103 5 0 3 65 85 -4.959 -0.803 -4.221 -2.596 -2.508 IL 103 103 3 103 5 1 7 67 87 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 29 78 G C - - MP 104 103 3 108 6 2 8 66 85 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.778 -0.112 -3.817 0.790 -4.321 -4.277 0.043 -4.208 -3.765 3.287 -4.155 -0.358 -0.235 -3.723 -1.876 -2.791 ML 105 103 3 108 6 1 5 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 3 108 6 1 3 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 3 108 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 30 77 a u - - MP 110 109 6 114 4 2 7 64 83 -6.924 -7.131 -0.054 -5.545 -2.021 -1.958 -2.197 1.900 -2.178 -3.018 1.336 -1.010 -2.242 1.405 -2.776 0.159 1.124 -2.328 -0.273 -0.230 ML 111 109 6 114 4 1 4 64 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 4 1 2 64 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 113 109 6 114 4 0 1 63 82 -4.568 -4.250 -2.265 -0.520 IL 114 114 5 114 4 1 5 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 115 115 6 115 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 116 115 6 118 3 1 5 61 81 -8.334 -0.019 -6.652 -1.445 -1.449 -2.177 1.607 D 117 115 6 118 3 0 0 60 80 -5.620 -0.734 -1.403 IL 118 118 3 118 3 1 3 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 76 - C - - MR 119 118 3 121 5 1 5 60 80 -7.074 -0.040 -6.890 -7.102 -7.994 -1.688 1.610 -2.510 -1.113 D 120 118 3 121 5 0 0 59 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 121 121 3 121 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 75 u g - - MP 122 121 3 126 6 2 6 59 79 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.965 -3.958 -3.701 -0.303 -2.483 -4.132 2.000 -3.260 -3.750 -0.083 -4.055 -2.045 0.982 -4.042 2.833 -2.625 ML 123 121 3 126 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 2 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 2 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 74 G C - - MP 128 127 6 132 6 2 6 57 77 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.760 -2.708 -3.812 0.677 -4.097 -4.208 0.195 -4.157 -3.743 3.350 -1.460 -0.492 -0.121 -3.693 -1.722 -2.812 ML 129 127 6 132 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 2 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 73 G C - - MP 134 133 6 138 6 2 5 55 75 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.703 -3.075 -4.798 0.226 -5.178 -4.679 -0.552 -5.038 -4.302 3.629 -4.642 -0.773 -0.938 -4.442 -2.587 -3.676 ML 135 133 6 138 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 35 72 G C - - MP 140 139 6 144 6 2 5 53 73 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.951 -0.736 -3.983 0.707 -4.526 -4.343 -0.078 -4.387 -3.895 3.387 -4.266 -0.426 -0.361 -3.832 -2.023 -2.947 ML 141 139 6 144 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 36 71 A U - - MP 146 145 6 150 6 2 5 51 71 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.101 -5.160 0.197 -3.824 -3.672 1.114 -4.218 -0.280 -0.221 -4.354 -1.744 -2.615 ML 147 145 6 150 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 70 a u - - MP 152 151 6 156 6 2 4 49 69 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -2.924 0.668 -3.045 2.551 -3.351 -4.073 0.584 -3.297 -3.015 1.710 -3.542 0.015 0.337 -3.299 -1.195 -2.028 ML 153 151 6 156 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 69 a u - - MP 158 157 6 162 6 2 4 47 67 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -2.940 -2.455 -3.038 2.704 -3.117 -4.033 0.844 -3.234 -3.049 1.402 -3.582 -0.257 0.529 -3.291 -0.973 0.299 ML 159 157 6 162 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 39 68 C G - - MP 164 163 6 168 4 2 2 45 65 -6.924 -7.131 -0.054 -5.545 -4.510 -4.412 -4.207 -0.648 -2.933 -4.623 3.539 -3.739 -4.254 -0.402 -4.520 -2.359 0.585 -4.582 -0.638 -3.095 ML 165 163 6 168 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 45 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 44 64 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 47 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 170 169 6 172 3 1 1 43 62 -7.942 -0.021 -6.596 1.709 -2.327 -1.964 -1.865 D 171 169 6 172 3 0 0 41 61 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - a - - - ML 173 172 3 175 3 1 1 42 61 -7.942 -0.021 -6.596 0.838 -1.000 -0.271 -0.178 D 174 172 3 175 3 0 0 40 60 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - a - - - ML 176 175 3 178 3 1 1 41 60 -8.334 -0.019 -6.652 0.370 0.286 -0.697 -0.199 D 177 175 3 178 3 0 0 39 59 -5.620 -0.734 -1.403 IL 178 178 3 178 3 1 1 41 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 67 - C - - MR 179 178 3 181 3 1 1 40 59 -8.334 -0.019 -6.652 -1.688 1.610 -2.510 -1.113 D 180 178 3 181 3 0 0 38 57 -6.390 -1.568 -0.620 IR 181 181 3 181 3 1 1 40 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 66 - U - - MR 182 181 3 184 5 1 1 39 58 -7.074 -0.040 -6.890 -7.102 -7.994 -0.913 -0.527 -1.649 1.296 D 183 181 3 184 5 0 0 37 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 184 184 3 184 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 43 65 G C - - MP 185 184 3 189 6 2 2 38 57 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.828 -2.767 -3.882 0.544 -4.128 -1.202 0.119 -4.269 -3.807 3.389 -4.170 -0.624 -0.198 -3.672 -1.778 -2.930 ML 186 184 3 189 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 187 184 3 189 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 188 184 3 189 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 189 189 5 189 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 190 190 6 190 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 44 64 a u - - MP 191 190 6 195 6 2 2 36 55 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 0.346 -2.011 -2.482 1.958 -2.582 -3.349 1.032 -2.772 -2.495 1.596 -3.019 0.786 0.820 -2.641 -0.614 -1.597 ML 192 190 6 195 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 193 190 6 195 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 194 190 6 195 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 195 195 5 195 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 196 196 6 196 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 45 63 C G - - MP 197 196 6 201 4 2 2 34 53 -6.924 -7.131 -0.054 -5.545 -3.999 -3.954 -3.784 -0.206 -2.595 -4.263 3.267 -3.360 -3.814 0.035 -4.144 -1.958 1.001 -4.092 0.450 -2.669 ML 198 196 6 201 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 199 196 6 201 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 200 196 6 201 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 201 201 5 201 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 202 202 6 202 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 46 - U - - - ML 203 202 6 205 3 1 1 31 50 -7.942 -0.021 -6.596 -1.445 -1.449 -2.177 1.607 D 204 202 6 205 3 0 0 30 49 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 47 - U - - - ML 206 205 3 208 3 1 1 30 49 -7.942 -0.021 -6.596 -1.445 -1.449 -2.177 1.607 D 207 205 3 208 3 0 0 29 48 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 48 - A - - - ML 209 208 3 211 3 1 1 29 48 -7.942 -0.021 -6.596 1.709 -2.327 -1.964 -1.865 D 210 208 3 211 3 0 0 28 47 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 49 - g - - - ML 212 211 3 214 3 1 1 28 46 -8.334 -0.019 -6.652 -0.243 -0.143 0.177 0.163 D 213 211 3 214 3 0 0 26 45 -5.620 -0.734 -1.403 IL 214 214 3 214 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 62 - u - - MR 215 214 3 217 3 1 1 27 45 -8.334 -0.019 -6.652 0.127 -0.171 -1.049 0.620 D 216 214 3 217 3 0 0 25 44 -6.390 -1.568 -0.620 IR 217 217 3 217 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 53 ] - 61 - A - - MR 218 217 3 220 3 1 1 26 44 -8.334 -0.019 -6.652 1.021 -0.715 -1.067 -0.177 D 219 217 3 220 3 0 0 24 43 -6.390 -1.568 -0.620 IR 220 220 3 220 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 60 - c - - MR 221 220 3 223 5 1 1 25 43 -7.074 -0.040 -6.890 -7.102 -7.994 0.199 0.688 -1.237 -0.293 D 222 220 3 223 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 223 223 3 223 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 50 59 c g - - MP 224 223 3 228 6 2 2 24 42 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -1.910 -1.976 -2.096 1.029 -1.937 -2.892 2.100 -2.336 -0.805 1.050 -1.156 -0.464 1.533 -2.228 -0.016 -1.279 ML 225 223 3 228 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 226 223 3 228 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 227 223 3 228 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 228 228 5 228 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 229 229 6 229 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 51 58 g u - - MP 230 229 6 234 6 2 2 22 40 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -1.991 -1.238 -2.378 1.085 -2.370 -2.703 1.265 -0.461 -1.080 1.300 -2.374 1.646 0.959 -2.352 -0.400 -1.399 ML 231 229 6 234 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 232 229 6 234 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 233 229 6 234 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 234 234 5 234 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 235 235 6 235 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 52 57 c g - - MP 236 235 6 240 4 2 2 20 38 -6.924 -7.131 -0.054 -5.545 -2.286 -2.407 -2.432 0.766 -1.092 -3.235 2.524 -2.596 -2.475 0.784 -0.543 -0.840 1.281 -2.589 0.204 -1.582 ML 237 235 6 240 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 238 235 6 240 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 239 235 6 240 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 240 240 5 240 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 241 241 6 241 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 53 - c - - - ML 242 241 6 244 3 1 1 16 35 -7.942 -0.021 -6.596 -0.389 0.416 -0.746 0.385 D 243 241 6 244 3 0 0 16 34 -6.174 -1.687 -0.566 IL 244 244 3 244 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 54 - C - - - ML 245 244 3 247 3 1 1 15 33 -7.942 -0.021 -6.596 -0.875 1.034 -1.683 0.132 D 246 244 3 247 3 0 0 15 33 -6.174 -1.687 -0.566 IL 247 247 3 247 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 55 - U - - - ML 248 247 3 250 3 1 1 13 31 -7.942 -0.021 -6.596 -0.913 -0.527 -1.649 1.296 D 249 247 3 250 3 0 0 13 32 -6.174 -1.687 -0.566 IL 250 250 3 250 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 56 - A - - - ML 251 250 3 253 2 1 1 1 1 * 0.000 1.709 -2.327 -1.964 -1.865 D 252 250 3 253 2 0 0 0 0 * 0.000 IL 253 253 3 253 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 254 253 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sX8 ACC RF02227 DESC Proteobacterial sRNA sX8 LENG 82 MAXL 171 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 10:01:54 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02227/CM NSEQ 12 EFFN 2.991211 CKSUM 3577359433 STATS LOCAL MSV -8.3251 0.71889 STATS LOCAL VITERBI -9.4687 0.71889 STATS LOCAL FORWARD -3.6048 0.71889 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39233 1.30142 1.41967 1.43732 1.38629 1.38629 1.38629 1.38629 0.08404 3.97848 2.78244 1.46634 0.26236 0.00000 * 1 3.41649 0.19431 3.20696 2.27022 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03990 3.93434 3.93434 1.46634 0.26236 1.66903 0.20879 2 3.20515 2.07773 2.97715 0.24425 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03990 3.93434 3.93434 1.46634 0.26236 1.66903 0.20879 3 2.74217 1.65228 2.51477 0.41087 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03990 3.93434 3.93434 1.46634 0.26236 1.66903 0.20879 4 3.39763 0.19596 3.19749 2.26681 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03990 3.93434 3.93434 1.46634 0.26236 1.66903 0.20879 5 2.45447 3.23045 0.18640 3.10981 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03990 3.93434 3.93434 1.46634 0.26236 0.47299 0.97588 6 2.93758 0.42653 2.72431 1.47560 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 7 2.74934 1.59545 2.54248 0.42382 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 8 1.61273 2.35462 0.52036 2.19444 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 9 1.36153 1.47496 1.34822 1.36555 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 10 1.47877 1.29929 1.96349 1.02446 10 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 11 2.25100 0.43191 2.23405 1.97803 11 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 12 0.37890 2.07711 2.52171 2.20932 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 13 2.10838 0.35043 3.00851 2.08093 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 14 2.11936 0.52358 1.99098 1.89091 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 15 1.44225 1.66902 1.27538 1.21791 15 u - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 16 2.21560 0.55653 2.16002 1.59753 16 C - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 17 1.05806 2.70437 0.68270 2.51693 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 18 2.10193 2.88046 0.28246 2.69204 18 G - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 19 3.29856 0.25762 3.05086 1.94592 19 C - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 20 2.52828 3.34533 0.17274 3.13274 20 G - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 21 0.57559 2.67083 1.25238 2.49368 21 A - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 22 0.28354 3.12339 1.91302 2.89602 22 A - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 23 2.48353 3.28628 0.18357 3.06056 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 24 0.11347 3.52959 3.22617 3.26373 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.03815 3.97848 3.97848 1.46634 0.26236 1.09861 0.40547 25 0.11347 3.52959 3.22617 3.26373 25 A - 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