# STOCKHOLM 1.0
#=GF ID ZNRD1-AS1_2
#=GF AC RF02219
#=GF DE ZNRD1 antisense RNA 1 conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 60.0
#=GF NC 59.8
#=GF TC 61.3
#=GF PI HTEX4
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.89 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 9553157
#=GF RT HTEX4, a new human gene in the MHC class I region, undergoes alternative
#=GF RT splicing and polyadenylation processes in testis.
#=GF RA Lepourcelet M, Coriton O, Hampe A, Galibert F, Mosser J
#=GF RL Immunogenetics. 1998;47:491-496.
#=GF RN [2]
#=GF RM 11130983
#=GF RT Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a
#=GF RT dense and complex structure of five genes.
#=GF RA Coriton O, Lepourcelet M, Hampe A, Galibert F, Mosser J
#=GF RL Mamm Genome. 2000;11:1127-1131.
#=GF WK ZNRD1-AS1
#=GF SQ 34

BX927229.6/89400-89475     CAAGAUCUUUU-UUUCCAGUGGAGACUGCUGACCUGCAGCAAUCCUAGGAUCUUUAGAUG--AUGUACCCCAGGCCAAU
AB158486.1/124957-125032   CAAGAUUUUUU-UCUCCAGAGGGGACUGUUGACCUGCAGCAAUCCUAGGGUCUUUAGAUA--CUUUAGCCCAGGCCAAU
AB202082.1/26744-26819     CAAGAUCUUUU-UUUCCAGUGGAGACUGCUGACCUGCAGCAAUCCUAGGAUCUUUAGAUG--AUGUACCCCAGGCCAAU
AB210195.1/26694-26769     CAAGAUCUUUU-UUUCCAGUGGAGACUGCUGACCUGCAGCAAUCCUAGGAUCUUUAGAUG--AUGUACCCCAGGCCAAU
AL671859.3/37718-37793     CAAGAUCUUUU-UUUCCAGUGGAGACUGCUGACCUGCAGCAAUCCUAGGAUCUUUAGAUG--AUGUACCCCAGGCCAAU
ABDC01385912.1/1808-1883   CAAGAUCUUUU-UCUCCAGUGGGGACUGCUGACCUGCAGCAAUCCGAGGAUCUUUAGAUG--AUUUAGCCCAGGCCAAU
AAPY01795997.1/566-491     CAAGAUCUUUU-UCUCCAGUGGGGACUGCUGACCUGCAGCAAUCCUAGGAUCUUCAGAUA--CUUUAGCCCAGGCUAAU
AAQQ01488059.1/1679-1754   CAAUAUCUUUU-UCUCCAGUGGAGAAUGUUGAUCUGCAGCAAUCCUAGGGUCUUUAGAUG--CUUUAGCCCAAGCCAAU
AAWR02009834.1/39363-39438 CAAAAUUUUUU-UCUCCAGUGGGGACUGCUGACCUGCAGCAAUCCUAGGGUCUUUAGUUG--CUUUAGCCCAGGCCAAU
AAGV020611706.1/1022-1097  CAAGAUCUUUU-UCUCCAGUGGGGACUGUUGGCCUGCAGCAAUCCUAGAGUCUUUAGAUG--CUUUAGCCCAGGCCAAU
AAFC03022489.1/49217-49292 CAAUAUUUUUU-UCUCCAGUGGAGACUGUUGACCUGCAGCAAUCCUAGGGUCUUUUGAUA--CUUUAGCCCAGGCCAAU
ABRR01324132.1/3538-3613   CAAGAUUUUCU-UCUCCAGUGGGGAAUGCUGACCUGCAGCAAUCCUGGGAUCUUUAGAUA--CUUUAGCCCAAGCCAAU
AAKN02056639.1/16137-16062 CAAGAUUUUUU-UCUCCAGUGGGGACUGCUGACCUACAGCAACCCUCGGGUCUUUCGAUG--UUUUAGCCCAGGCCAAU
AAYZ01329398.1/8214-8289   CAAGAUCUUCU-UCUCCAGUGGAGACUGUUGACCUACAGCAACCCUAGGGUCCUUAGAUG--CUUUCACCCAGGCGAAU
ABRQ01145254.1/2995-3070   CAAAAUCUCUU-UUUCCAGUGGAGAGUGUUGGCCAGGAGCAAUUCUAGGGUCUUUAGAUG--CUUUAGCCCAGGCUAAU
ABVD01584167.1/2072-2147   CAAUAUCUUUU-UCUCCAGUGGGGACUCUUGGCCUGCAGCAAUCCUAGAGUCUUUAGAGG--CUAUAGCCCAGGCCAAU
AALT01150796.1/1716-1641   CAAUAUUUUUU-UCUCCAGUGGAGAUUGCUGACCAGCAGCUAUUCUAGGGUCUUUAGAUG--AUUUAGCCCAAAUCAGU
ABRP01143455.1/10603-10679 CAAUAUUUUUUUUCUCCAGUGGAGACUGCUGACCUGAAGCAGUCCUAGGGUCUCUAGAUG--CUUUAGCCCAGAUCAAU
ACBE01158275.1/13794-13869 CAAGAUUUUCU-UCUCCAGUGGGGACAGCUGACCUGUAGCAAUCCUGGGGUCUGUAGACA--UUUUAGCCCAGGACAAU
CU463334.13/59668-59593    CAGGAUCUUCU-UCUCCAGUGGAGACUGCUGGCCUUCUGAAAUCCUAGGGUCUCUGGAUU--CUUUUGCCCAAGCCAAU
AAHX01099545.1/2312-2387   CAGGAUCCUUU-UCUCUAGAGGAGACCGUUGACCUUCUGAGAUCCUAGGGUCUUUGGAUU--CUUUUGCCCAAGCCAAU
ABQO011070168.1/1023-1098  CAAGAUCUUUU-UUUCCAGAGGAGAUUGGAGACCCCUGGCAAUCCAAGGGUGCUGAGUAU--UUUUGACCCAGGCUAAC
ABRO01143486.1/395-320     CUUAAUCUUCU-UUUCUAGUGGGGAAUAAGAACCUACUGCAAUCCGAGGGUCUUGAAUAU--UUUUAGCCCAGGCCAAU
AAFR03024661.1/17133-17058 CAAGAUCUUUU-UCUCUAGAGGGGAUCGGAGACCUCUGGCAAUCCGAGGGUCUUGAGUAU--UUUUGACCCAGGCUAAC
AAIY01339795.1/2447-2372   CUGGAUCUUCU-UUUCCAGUGGGGACUGAGAGCCCAUUGCGAUCCGAGAGUCUUGAGUAU--AUCUGGCCCAGGCCAAC
ABRT010452027.1/1937-1862  CUUAAUCUUCU-UUUCUAGUGGGGAAUAGGAGCCUACUACAAUUCAAGGGUCUUGAGUAU--UGUUAGCCCAGGCCAAU
ABRN01149097.1/2721-2644   CUUCAUCUUCU-UUUCUCAUGGGGACUGGGAACCUACUGCAAACCGAGGGUCUUGAGUAUUUUUUUGGCCCAGGCCAAU
AANN01596763.1/735-810     CUCAAUCUUCU-UUUCUAGUGGUGACUGGAAUCCUGGUGCGAUCCGAGGGUCUUGGAUGU--GUCUGACCCACGCCAGU
AC234889.2/53699-53774     CGAGAUCUUUU-UCUCCAGUGGAGACUGUUGACCUACAGCAACCCUAGGGUCCUUAGACG--AUUUCGCCCAGGCCAAU
AAPE02059329.1/35545-35620 CAAUAUUUUUU-UCUCCAGUGGGGACUGCUGACCUGAAGCAAUCCUAGGGUCUCUAGAUG--CUUUAACCCAGGCCAAC
AL731566.7/58444-58369     CUGAAUCUUCU-UUUCUAAUGGGGAAUAGGACCCUACUGCAAUCUGAGGGUCUUGAGUAU--UUUUAGCCCAGGCCAAU
AAQR03060021.1/3762-3837   CAAAAUCUUUU-UUUCCAGUGGGGACUGUUGGCCUGCAGCAAUCCUAGGAUCUUUAGAUG--AUUUAGCCCAGGCCAAU
AAEX03017624.1/44793-44868 CAGGAGUUUUU-UCUCCAGUGGGGACUGUUGGUCUACGGCAAUCCUAGGGUCUGGUGAUG--CUUUAGCCCAGGCCAAA
AAGU03087280.1/57524-57599 CCGAAUCUUCU-UUUCUAAUGGGGAUUGGGGACCCACUGCAAUCCGAGGGUCUUGAAUAU--AUUUGGCCCAGGCCAAU
#=GC SS_cons               :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::..:::::::::::::::::
#=GC RF                    CaagAUCUUUU.UcUCCAGUGGgGAcUGuuGaCCUgcaGCAAUCCuAGGGUCUUuaGaug..cUUUaGCCCAGGCCAAU
//
