INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-56 ACC RF02214 DESC microRNA mir-56 STATES 199 NODES 46 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 03:47:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF02214/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.660156 CKSUM 811333154 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 88.90 NC 66.00 EFP7GF -5.0221 0.72801 ECMLC 0.62202 -5.92385 3.20964 1600000 351967 0.003409 ECMGC 0.46188 -14.79245 -2.55337 1600000 114057 0.003507 ECMLI 0.60821 -4.43056 4.42193 1600000 261515 0.004589 ECMGI 0.47716 -10.70190 0.43697 1600000 81343 0.004917 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 101 -6.833 -7.040 -0.058 -5.454 IL 1 1 2 1 4 1 20 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 19 81 101 -8.256 -0.020 -6.573 -1.292 -1.323 -2.015 1.558 D 4 2 3 5 3 0 14 80 99 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 18 82 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 65 - G - - MR 6 5 3 8 3 1 19 80 100 -8.256 -0.020 -6.573 -1.353 -2.536 1.666 -1.922 D 7 5 3 8 3 0 11 78 98 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 17 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 64 - A - - MR 9 8 3 11 3 1 18 79 99 -8.256 -0.020 -6.573 1.669 -2.158 -1.812 -1.681 D 10 8 3 11 3 0 10 77 97 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 16 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 63 - G - - MR 12 11 3 14 5 1 18 78 98 -7.001 -0.042 -6.817 -7.029 -7.920 -1.353 -2.536 1.666 -1.922 D 13 11 3 14 5 0 10 77 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 14 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 62 g u - - MP 15 14 3 19 6 2 18 77 97 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.484 -2.305 -3.639 1.211 -4.247 -4.974 0.121 -3.681 -3.339 1.536 -3.853 2.929 -0.239 -4.208 -1.820 -2.369 ML 16 14 3 19 6 1 11 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 11 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 6 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 77 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 61 G C - - MP 21 20 6 25 6 2 17 75 95 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.538 -2.997 -4.620 0.334 -4.945 -4.612 -0.360 -4.847 -4.191 3.585 -4.544 -0.690 -0.751 -4.333 -2.386 -3.500 ML 22 20 6 25 6 1 11 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 10 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 6 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 60 C G - - MP 27 26 6 31 6 2 16 73 93 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 28 26 6 31 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 10 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 59 G C - - MP 33 32 6 37 6 2 14 71 91 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.538 -2.997 -4.620 0.334 -4.945 -4.612 -0.360 -4.847 -4.191 3.585 -4.544 -0.690 -0.751 -4.333 -2.386 -3.500 ML 34 32 6 37 6 1 10 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 8 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 5 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 58 g c - - MP 39 38 6 43 6 2 12 69 89 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.344 0.944 -3.432 0.994 -3.798 -4.110 0.373 -3.739 -3.383 2.932 -3.823 -0.160 0.094 -3.485 -1.492 -2.405 ML 40 38 6 43 6 1 9 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 7 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 4 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 10 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 10 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 57 A U - - MP 45 44 6 49 4 2 10 67 87 -6.833 -7.040 -0.058 -5.454 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 46 44 6 49 4 1 8 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 5 67 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 4 66 86 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 9 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 9 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 8 - U - - - ML 51 50 6 53 3 1 9 64 84 -7.858 -0.022 -6.512 -1.292 -1.323 -2.015 1.558 D 52 50 6 53 3 0 4 63 83 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 8 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - C - - - ML 54 53 3 56 3 1 8 63 83 -8.256 -0.020 -6.573 -1.486 1.548 -2.300 -0.953 D 55 53 3 56 3 0 3 62 82 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 7 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 56 - U - - MR 57 56 3 59 3 1 8 62 82 -8.256 -0.020 -6.573 -1.292 -1.323 -2.015 1.558 D 58 56 3 59 3 0 1 61 80 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 6 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 55 - u - - MR 60 59 3 62 5 1 7 61 81 -7.001 -0.042 -6.817 -7.029 -7.920 -0.622 0.421 -1.389 0.705 D 61 59 3 62 5 0 1 60 80 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 4 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 54 C G - - MP 63 62 3 67 6 2 8 60 80 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 64 62 3 67 6 1 3 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 3 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 4 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 53 A U - - MP 69 68 6 73 6 2 7 58 78 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 70 68 6 73 6 1 2 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 3 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 52 U A - - MP 75 74 6 79 6 2 5 56 76 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.973 -3.791 -3.835 -0.102 -2.825 -4.419 1.498 -3.505 -3.842 0.187 -4.226 -1.696 3.213 -4.132 -0.506 -2.687 ML 76 74 6 79 6 1 2 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 3 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 3 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 51 U A - - MP 81 80 6 85 4 2 4 54 74 -6.833 -7.040 -0.058 -5.454 -3.973 -3.791 -3.835 -0.102 -2.825 -4.419 1.498 -3.505 -3.842 0.187 -4.226 -1.696 3.213 -4.132 -0.506 -2.687 ML 82 80 6 85 4 1 1 55 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 54 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 53 73 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 2 56 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - u - - - ML 87 86 6 89 3 1 2 52 71 -8.256 -0.020 -6.573 -0.622 0.421 -1.389 0.705 D 88 86 6 89 3 0 0 51 70 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 50 - U - - MR 90 89 3 92 5 1 2 51 70 -7.001 -0.042 -6.817 -7.029 -7.920 -1.292 -1.323 -2.015 1.558 D 91 89 3 92 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 49 c g - - MP 93 92 3 97 6 2 3 50 69 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.584 -3.561 -3.446 0.093 -2.392 -3.986 2.681 -3.112 -3.476 0.327 -3.849 -1.630 1.200 -3.718 1.844 -2.370 ML 94 92 3 97 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 48 G C - - MP 99 98 6 103 6 2 3 48 67 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.538 -2.997 -4.620 0.334 -4.945 -4.612 -0.360 -4.847 -4.191 3.585 -4.544 -0.690 -0.751 -4.333 -2.386 -3.500 ML 100 98 6 103 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 47 G C - - MP 105 104 6 109 6 2 3 46 65 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.538 -2.997 -4.620 0.334 -4.945 -4.612 -0.360 -4.847 -4.191 3.585 -4.544 -0.690 -0.751 -4.333 -2.386 -3.500 ML 106 104 6 109 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 46 G C - - MP 111 110 6 115 6 2 3 44 63 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.538 -2.997 -4.620 0.334 -4.945 -4.612 -0.360 -4.847 -4.191 3.585 -4.544 -0.690 -0.751 -4.333 -2.386 -3.500 ML 112 110 6 115 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 45 U A - - MP 117 116 6 121 4 2 2 42 61 -6.833 -7.040 -0.503 -1.846 -3.973 -3.791 -3.835 -0.102 -2.825 -4.419 1.498 -3.505 -3.842 0.187 -4.226 -1.696 3.213 -4.132 -0.506 -2.687 ML 118 116 6 121 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - U - - - ML 123 122 6 125 3 1 1 40 59 -7.471 -0.029 -6.125 -0.643 -0.807 -1.313 1.254 D 124 122 6 125 3 0 0 38 57 -7.771 -0.373 -2.162 IL 125 125 3 125 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - G - - - ML 126 125 3 128 3 1 1 38 57 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 127 125 3 128 3 0 0 37 56 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - U - - - ML 129 128 3 131 5 1 1 37 56 -7.001 -0.042 -6.817 -7.029 -7.920 -1.292 -1.323 -2.015 1.558 D 130 128 3 131 5 0 0 36 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 131 131 3 131 5 1 1 38 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 44 A U - - MP 132 131 3 136 6 2 2 36 55 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 133 131 3 136 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 43 C G - - MP 138 137 6 142 6 2 2 34 53 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 139 137 6 142 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 42 C G - - MP 144 143 6 148 4 2 2 32 51 -6.759 -8.005 -0.087 -4.458 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 145 143 6 148 4 1 1 32 51 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 31 50 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 29 49 -12.737 -14.007 -2.036 -0.404 IL 148 148 5 148 4 1 1 32 51 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 41 - C - - MR 150 149 6 152 5 1 1 30 49 -7.001 -0.042 -6.817 -7.029 -7.920 -1.486 1.548 -2.300 -0.953 D 151 149 6 152 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 40 U A - - MP 153 152 3 157 6 2 2 29 48 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.973 -3.791 -3.835 -0.102 -2.825 -4.419 1.498 -3.505 -3.842 0.187 -4.226 -1.696 3.213 -4.132 -0.506 -2.687 ML 154 152 3 157 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 39 C G - - MP 159 158 6 163 6 2 2 27 46 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 160 158 6 163 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 38 A U - - MP 165 164 6 169 4 2 2 25 44 -6.833 -7.040 -0.058 -5.454 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 166 164 6 169 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - u - - - ML 171 170 6 173 3 1 1 22 41 -7.858 -0.022 -6.512 -0.622 0.421 -1.389 0.705 D 172 170 6 173 3 0 0 21 40 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - a - - - ML 174 173 3 176 3 1 1 21 40 -7.858 -0.022 -6.512 0.600 0.220 -1.042 -0.262 D 175 173 3 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - g - - - ML 177 176 3 179 3 1 1 20 39 -7.858 -0.022 -6.512 -0.278 0.169 0.285 -0.264 D 178 176 3 179 3 0 0 19 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - u - - - ML 180 179 3 182 3 1 1 19 38 -7.858 -0.022 -6.512 -0.622 0.421 -1.389 0.705 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - A - - - ML 183 182 3 185 3 1 1 18 36 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - A - - - ML 186 185 3 188 3 1 1 16 35 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - u - - - ML 189 188 3 191 3 1 1 15 33 -7.858 -0.022 -6.512 0.537 -0.797 -0.998 0.559 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - u - - - ML 192 191 3 194 3 1 1 13 32 -7.858 -0.022 -6.512 -0.622 0.421 -1.389 0.705 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - u - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -0.622 0.421 -1.389 0.705 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-56 ACC RF02214 DESC microRNA mir-56 LENG 65 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 03:47:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF02214/CM NSEQ 2 EFFN 1.746094 CKSUM 811333154 STATS LOCAL MSV -8.0380 0.72801 STATS LOCAL VITERBI -9.4572 0.72801 STATS LOCAL FORWARD -2.8661 0.72801 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56913 1.36117 1.32521 1.31058 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.32537 2.33897 2.82899 0.29202 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.79042 2.58050 0.39601 2.47250 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.38935 2.91631 0.22686 2.86214 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.89119 0.32899 2.62441 1.88152 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.38990 2.91686 0.22670 2.86294 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.34643 2.39032 0.60936 2.25824 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.49271 2.41851 1.58032 2.36372 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.32537 2.33897 2.82899 0.29202 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.47382 0.29507 3.04054 2.09194 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.88569 0.32983 2.62209 1.88066 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.49276 2.41838 1.58032 2.36352 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.64944 1.67223 2.35955 0.43538 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.64951 1.67223 2.35957 0.43537 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 1.83614 1.08509 2.37042 0.89341 14 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.48527 0.85778 2.24235 0.95093 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.38924 2.91619 0.22689 2.86197 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.38984 2.91679 0.22672 2.86285 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.38985 2.91681 0.22672 2.86287 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.64929 1.67223 2.35949 0.43541 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.33393 3.73767 1.34674 1.46634 0.26236 1.09861 0.40547 20 1.85658 1.96427 2.32378 0.50148 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.06438 3.46812 3.46812 1.46634 0.26236 0.16813 1.86591 21 2.37594 3.20461 0.21767 2.77894 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.32537 2.33897 2.82899 0.29202 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.49326 2.41718 1.58025 2.36160 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.88694 0.32964 2.62262 1.88086 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.88785 0.32950 2.62300 1.88100 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.62863 1.67212 2.35180 0.43885 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.87619 0.33130 2.61808 1.87917 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.49346 2.41668 1.58022 2.36080 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.83614 1.08509 2.37042 0.89341 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.96495 1.22542 2.12424 1.58067 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.59290 1.26125 1.17754 1.58315 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.83614 1.08509 2.37042 0.89341 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.21761 2.93049 2.68540 2.60378 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.21761 2.93049 2.68540 2.60378 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.01066 1.94968 2.09063 0.99400 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.83614 1.08509 2.37042 0.89341 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.83614 1.08509 2.37042 0.89341 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.59325 1.83984 2.23336 0.41671 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.15523 2.79017 0.28524 2.64675 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.49557 2.53734 1.50891 2.40187 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.47382 0.29507 3.04054 2.09194 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.15147 2.78571 0.28674 2.64094 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.14876 2.78250 0.28782 2.63676 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57237 1.83854 2.22673 0.42051 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.49546 2.53767 1.50891 2.40232 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.08060 0.26539 2.74790 2.09475 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.08264 0.26514 2.74872 2.09515 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.08516 0.26483 2.74973 2.09563 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.80444 2.40616 0.44510 2.25843 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.32537 2.33897 2.82899 0.29202 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.49534 2.53803 1.50891 2.40282 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.49518 2.53851 1.50891 2.40347 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.59843 1.84017 2.23499 0.41578 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.15866 2.79424 0.28388 2.65207 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 1.83614 1.08509 2.37042 0.89341 55 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.32537 2.33897 2.82899 0.29202 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.59439 1.83992 2.23372 0.41650 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.48749 0.49164 2.20167 1.63659 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.08069 0.26538 2.74794 2.09477 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.15709 2.79238 0.28451 2.64963 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.08530 0.26481 2.74979 2.09566 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.69892 1.65221 2.38941 0.43169 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.37594 3.20461 0.21767 2.77894 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 0.21761 2.93049 2.68540 2.60378 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.37594 3.20461 0.21767 2.77894 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //