# STOCKHOLM 1.0
#=GF ID WT1-AS_7
#=GF AC RF02209
#=GF DE WT1 antisense RNA conserved region 7
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 47.6
#=GF TC 50.5
#=GF SE Predicted; ClustalW
#=GF SS Predicted; RNAalifold
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 19.18 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 2173145
#=GF RT Tissue, developmental, and tumor-specific expression of divergent
#=GF RT transcripts in Wilms tumor.
#=GF RA Huang A, Campbell CE, Bonetta L, McAndrews-Hill MS, Chilton-MacNeill S,
#=GF RA Coppes MJ, Law DJ, Feinberg AP, Yeger H, Williams BR
#=GF RL Science. 1990;250:991-994.
#=GF RN [2]
#=GF RM 8406502
#=GF RT Sequence of the WT1 upstream region including the Wit-1 gene.
#=GF RA Gessler M, Bruns GA
#=GF RL Genomics. 1993;17:499-501.
#=GF RN [3]
#=GF RM 17210670
#=GF RT A CTCF-binding silencer regulates the imprinted genes AWT1 and WT1-AS and
#=GF RT exhibits sequential epigenetic defects during Wilms' tumourigenesis.
#=GF RA Hancock AL, Brown KW, Moorwood K, Moon H, Holmgren C, Mardikar SH,
#=GF RA Dallosso AR, Klenova E, Loukinov D, Ohlsson R, Lobanenkov VV, Malik K
#=GF RL Hum Mol Genet. 2007;16:343-354.
#=GF WK WT1-AS
#=GF SQ 21

DQ289490.1/1917-2210       AGAUGGUCCCCGAGCUCCCCGAGAGUCCUCAGUGAAAGGA-UUCCGCGGCACUGC-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGGCCAGGCCGUGGCCAGAGCAGAUAC-GUAGGCCCAUGAAAUUGAUG
AL049692.13/49726-49433    AGAUGGUCCCCGAGCUCCCCGAGAGUCCUCAGUGAAAGGA-UUCCGCGGCACUGC-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGGCCAGGCCGUGGCCAGAGCAGAUAC-GUAGGCCCAUGAAAUUGAUG
U82757.1/25966-25684       -----------GAGCUCCCCGAGAGUCCUCAGUGAAAGGA-UUCCGCGGCACUGC-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGGCCAGGCCGUGGCCAGAGCAGAUAC-GUAGGCCCAUGAAAUUGAUG
ABRN01427348.1/2380-2087   AGAUGGUCUCCGAGCUCCGAGAGAGUCCCCAAAGAAAGGA-UUGCGCGGCGCUGC-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACGGUGGGGAUGGAGGCCGGGCUGUGGCCAGAGGAGAUAC-GCAGGCCCAUGAAAUUGAUG
AAIY01350831.1/1406-1699   AGAUGGUCCCCAAGCUCCCAGAGAGUCCCCAGUGAAAGGA-CUCCACAGCGCUGC-CCCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGGCCGGGAUGUGGCCGGAGCAGAUAC-AUAGGCCCAUGAAAUUGAUG
AAGV020131544.1/3530-3239  AGAUGGUUCUCGAGCUCCCA--GAGUCCCCAAUGAAAGGA-UUCCGCAGUUCCGU-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGCUGGAGGCCGGGCCGUAGCCAGAGCAGAUAC-AUAGGCCCAUGAAAUUGAUG
ABRO01046980.1/6508-6226   AGAUGGUCCCCGA-----------GUCCCCAAUGAAAGGA-UUCCGCAGCGAGGC-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUAGAGGCCAGGCCGUGGCCAGAGCAGAUAC-GUAGGCCCAUGAAAUUGAUG
AAYZ01200691.1/2847-3133   AGAUGGUCCCUGAG---------AGUCCCCAGCGACAGGA-UCCCGCAGCACUGC-UUCUAUUAUGAUAUCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGCGGCCAGGCCGUGGCCAGAGCAGAUAC-GGAGGCCCAUGAAAUUGAUG
AAFC03041822.1/1604-1317   ---UGAUGCC---ACCGCGAGAGGGUCCCCAAUGAGAGGA-UUCCGCAGCGCUGC-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGGCCGGGCCGUGGCCAGAGCAGAUAC-GCAGGCCUAUGAAAUUGAUG
AAWR02018627.1/3176-3468   AGAUGGUCCCCGAGCUCCCACAGAGUCCCCGGUGAAAGGA-CGCUGCAGCGCCGC-CUCUAUUACGAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGGCCGGGCCGUGGCCGGAGCAGAUAC--UCGGCCCAUGAAAUUGAUG
ABRQ01001649.1/3785-3493   AGAUGGUCCCCAAGCACCCAAAGAGUCCCCAUUGAAAGAA-C-CCUCGGUGCCGC-CUCUACGAUUAUACCGUAAAUCUGCUUAAAUUCUGGAACUAAUUAUACAGAGGAUAUGUCUCAAUUUGUUCUGCACUAAUGCCACAGCGGGACUGGAGGCCUGGCCAUGGCCAGAGCAGAUAC-GUAGGCCCAUGAAAUUGAUG
AAKN02048412.1/2848-3138   GGGUGAGCGCCUGCCCGCCU--GGAGUCGCAUUGAGAGGA-UUCCACUACGCUGC-CUCUAUUAUUAUACCGUAAAUCUCUUUAAAUUCUGGAACUAAUUACGUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUGAUGCCGCAGCGGGGACGGGGGCCAGGCCAUGGCU-GCUCAGAUAC-AUGGGCCCAUGAAAUUGAUG
AAFR03017974.1/13339-13632 AGACGUUCCCGGGUCCCGGGGAGAAACCCUAAAUAAAAGAAUCAGGCAGAGUC-CAGGCUAUUAUUUUACCGUAAAUCU-UGUAAAUUCUGGAACUAAUUACAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACUUUGGGAAUGGAGUCGAGGCCAUAACCAGAACAGAUCC-UCCAGCUCGUGAAAUUGAUG
ABQO010577855.1/566-860    GAAAGUUCCCAGGUCCCCUGGAGAAGCCCUAAAUAAAAGAAUCCGGCAGAGUC-CAAGCUAUUAUUUUACCGUAAAUCU-UGUAAAUUCUGGAACUAAUUACAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUUAUGCCACAUUGGGAAUGGAGUCGGGGCCGUAACCAGAACAGAUCCCUCCAGCUCGUGAAAUUGAUG
AAPN01115953.1/1683-1391   GGUAGCAAUCGGG-CCCGAGGAGAAGCUCCGCAUCAAAGCCUUCGGUGGAGUUGCGCGCUAUUAUUUUACCGUAAAUCU-UUUAAAUUCUGGAACUAAUUACCUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAUUGGGGAUGGAGCCGGGGCCACAACCAGAGCAGAAUC-UCGAGUCCACCAAAUUGAUG
AAVX01033539.1/1934-2217   ----AAACUCUCACUUUGUG------AACCAUGAAACGGCCUUGUAUGGU-CCACUGAACAGUCUUUCUCGUUAAAUCU-CUAUGAUUCUGGAACCAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUCCAUUAAUGCCACAUUGGG-AUGUGAGGC-GUCCCUACCCGGAGCAGAUAUUCCAAGCACAUGAAAUUGAUG
AC146873.3/58290-58566     AGUUUCACCUUCAACUUGAGC-CAAAAAGAAUGAAGCGGUUAUUUGUAGC-CCACU--CUAUUAUUUUACCGUAAAUCU-UCUAAAUUCUGGAACUAAUUACACCGAGGAUAUGUCUCAAUUUGUUCUGCUUUAAUGCCGCAGUCGG-A---------GCCACCACC-AGACCUGAU-UCUCAGCAUCAUGAAAUUGAUG
AANG01575001.1/5234-4943   UGAUGGUCCCCAAGCUCCCA--GAGUCCCCAUUGGAAGGA-UUCCGCAGCGCUGC-CUCUAUUAUUAUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGGCCGGGCCGUGGCCAGAGCAGAUAC-GUAGGCCCAUGAAAUUGAUG
AANN01446529.1/371-665     AGAUGGUCCCGAG-CUCCCA--GAGUCCCCAGUAAAAGGA-UUCCGCCGCCCUGC-CUCUAUUAUUGUGCCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUAGAGGCCGGGCCGUGGCCAGAGCAGAUAC-GUAGGCCCAUGAAAUUGAUG
AABR05104440.1/330-37      CACGGGUUCCCCAGCUCCCCAAGAGCCCCCAAUGAAAGGA-UUCAGCAGCGCUGC-UUCUAUUAUUAUCCCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACAGUGGGGAUGGAGACCAGGCCGUGGCCAGAGCAGAUAU-GGAAGCCCAUGAAAUUGAUG
AAGW02037545.1/4117-4401   AGAUGGUCCCCGGG---------AGUCCCCGGUGAAAGGAUUUCCGCAGCGCUGC-CUCUAUUAUUGUACCGUAAAUCUUUUUAAAUUCUGGAACUAAUUAUAUAGAGGAUAUGUCUCAAUUUGUUCUGCAUUAAUGCCACGGUGAGGAUGGCGGCCAGGCGGUGGCCAGAGCAGAUAC-G-AGGCCCAUGAAAUUGAUG
#=GC SS_cons               ::::::::::::::::::::::::::::::::::::::::.::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
#=GC RF                    aGauGguccCcgagCucccggAGAguccccAuugaaaGGa.uuccGcaGcgcuGC.cuCUAuUAUUaUaCCGUAAAUCUuUuUAAAUUCUGGAACUAAUUAuaUaGAGGAUAUGUCUCAAUUUGUUCUGCAUUaAUGCCaCagUGGGGAUGGaGgCcgGgCcgUggCCaGAgCAGAUac.guaGGccCAUGAAAUUGAUG

DQ289490.1/1917-2210       AACUGAGAG--UUGCUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
AL049692.13/49726-49433    AACUGAGAG--UUGCUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
U82757.1/25966-25684       AACUGAGAG--UUGCUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
ABRN01427348.1/2380-2087   AGCUGAGAG--UUGCUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUACUGACCCCAGAUUCAACUUUGCAAACAAC
AAIY01350831.1/1406-1699   AACUGAGAG--UUGCUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAAAUUCAACUUUGCAAACGAG
AAGV020131544.1/3530-3239  AACUGAGAG--UUGCUUCUAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
ABRO01046980.1/6508-6226   AACUGAGAG--UUGCUUCCAGUCCUGGGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
AAYZ01200691.1/2847-3133   AACUGAGAGACUUGCUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
AAFC03041822.1/1604-1317   AGCUGAGAG--UUGCUUCUAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
AAWR02018627.1/3176-3468   AACUGAGAG--CUGCUUCCAGUCCCGGGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUCUGCAGACAAC
ABRQ01001649.1/3785-3493   AACUGAGAG--UUGUUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACACC
AAKN02048412.1/2848-3138   AACUGAGAG--CUGCUUCCAGCCCUGCGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
AAFR03017974.1/13339-13632 AACUGAGAG--CUGCUUCCAGUCCUGAACA--CGCCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAAAUUCAACUUUGCAAAGAAC
ABQO010577855.1/566-860    AACUGAGAG--CUGCUUCCAGUCCUGGACA--CGCCAUCUGGAAUUCCAGUCUGAGACUACA-AUUAGAACUCCUGACCCCGGAUUCAACUCUGCAAAGAAG
AAPN01115953.1/1683-1391   AGCUGAGAG--UUGCU-CCAGCCCCGAGCC--CGCCAUCUGGAAUUCCUGUCUGAGGUUACA-GCUACAACUCUUGACCCCUCAUUCAACUUUGCAACGAAC
AAVX01033539.1/1934-2217   AACUGAGAC--CUACUACUAGUCCUGACUU--UACCAUCUGGAAUUCCAGACUGAGGUUACAGAAAAGAGCUUUUGACCCAAGAUUCAACUUUCACAAGUAC
AC146873.3/58290-58566     AAGUGAGAC--UUGCGG--AGUCCUAAAUA---ACCGUGCGGAAUUCCAGACUGGGGUUACC-AGGAGAGGCGCUGACCCCAUCCUCAACUUCCCUGGGAGC
AANG01575001.1/5234-4943   AACUGAGAG--UUGCUCGCAGUCCUCAGCG--CACCAUCUGGAAUUCUAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
AANN01446529.1/371-665     AACUGAGAGAGUUGCUUCCAGUCCUGAGCGCACACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
AABR05104440.1/330-37      AACUGAGAG--UUGCUUCCAGUCCAGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUAGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAG
AAGW02037545.1/4117-4401   AACUGAGAG--UUGCUUCCAGUCCUGAGCG--CACCAUCUGGAAUUCCAGUCUGAGGUUACA-AUUGGAACUCCUGACCCCAGAUUCAACUUUGCAAACAAC
#=GC SS_cons               :::::::::..:::::::::::::::::::..::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
#=GC RF                    AACUGAGAG..uUGCUuCcAGUCCuGagcg..CaCCAUCUGGAAUUCCAGuCUGAGGUUACa.AuuAGAaCUcCUGACCCCagaUUCAACUUUGCaAacaaC
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