INFERNAL1/a [1.1.5 | Sep 2023] NAME WT1-AS_5 ACC RF02207 DESC WT1 antisense RNA conserved region 5 STATES 241 NODES 81 CLEN 79 W 170 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 18:35:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02207/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.941406 CKSUM 1940675915 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 87.40 NC 56.80 EFP7GF -7.6918 0.71856 ECMLC 0.71915 -9.87013 -1.08892 1600000 663358 0.001809 ECMGC 0.40914 -20.53713 -7.55228 1600000 81153 0.004929 ECMLI 0.61568 -8.72921 0.40089 1600000 331486 0.003620 ECMGI 0.47657 -9.76353 0.53185 1600000 54062 0.007399 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 170 258 -6.953 -7.160 -0.053 -5.574 IL 1 1 2 1 4 2 30 173 260 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 172 260 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 2 29 171 259 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 4 2 3 5 3 0 25 167 255 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 31 177 265 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 29 169 257 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 7 5 3 8 3 0 24 166 254 -11.551 -1.585 -0.585 IL 8 8 3 8 3 2 30 175 264 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 28 168 256 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 10 8 3 11 3 0 24 165 252 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 30 174 262 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 27 167 254 -5.372 -0.071 -5.372 0.785 -0.045 -0.768 -0.474 D 13 11 3 14 3 0 23 164 251 -11.551 -1.585 -0.585 IL 14 14 3 14 3 2 29 173 261 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 26 165 253 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 16 14 3 17 3 0 22 162 249 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 28 171 259 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 26 164 251 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 19 17 3 20 3 0 21 161 248 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 28 170 258 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 25 163 250 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 22 20 3 23 3 0 21 160 246 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 27 169 257 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 24 162 248 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 25 23 3 26 3 0 20 158 245 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 26 167 255 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 24 160 247 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 28 26 3 29 3 0 19 157 243 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 25 166 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 23 159 245 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 31 29 3 32 3 0 18 156 242 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 25 165 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 22 158 244 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 34 32 3 35 3 0 18 154 241 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 24 164 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 21 156 243 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 37 35 3 38 3 0 17 153 239 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 23 162 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 21 155 241 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 40 38 3 41 3 0 16 152 238 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 22 161 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 20 154 240 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 43 41 3 44 3 0 16 150 236 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 22 160 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 19 152 238 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 46 44 3 47 3 0 15 149 235 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 21 158 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 19 151 237 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 49 47 3 50 3 0 14 148 233 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 20 157 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 18 150 235 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 52 50 3 53 3 0 13 146 232 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 20 156 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 17 148 234 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 55 53 3 56 3 0 13 145 230 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 19 154 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 16 147 232 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 58 56 3 59 3 0 12 144 229 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 18 153 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 16 146 231 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 61 59 3 62 3 0 11 142 227 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 17 152 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 15 144 229 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 64 62 3 65 3 0 11 141 226 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 17 150 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 14 143 228 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 67 65 3 68 3 0 10 140 224 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 16 149 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 14 141 226 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 70 68 3 71 3 0 9 138 223 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 15 148 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 72 71 3 74 3 1 13 140 225 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 73 71 3 74 3 0 9 137 221 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 15 146 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 75 74 3 77 3 1 12 139 223 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 76 74 3 77 3 0 8 135 220 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 14 145 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 78 77 3 80 3 1 12 137 222 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 79 77 3 80 3 0 7 134 218 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 13 144 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 81 80 3 83 3 1 11 136 220 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 82 80 3 83 3 0 7 133 216 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 13 142 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 11 135 218 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 85 83 3 86 3 0 6 131 215 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 12 141 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 87 86 3 89 3 1 10 133 217 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 88 86 3 89 3 0 6 130 213 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 12 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 9 132 215 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 91 89 3 92 3 0 5 129 212 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 11 138 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 9 131 214 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 94 92 3 95 3 0 4 127 210 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 10 137 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 8 129 212 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 97 95 3 98 3 0 4 126 209 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 10 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - G - - - ML 99 98 3 101 3 1 8 128 211 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 100 98 3 101 3 0 3 124 207 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 9 134 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 7 126 209 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 103 101 3 104 3 0 3 123 205 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 9 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 105 104 3 107 3 1 6 125 208 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 106 104 3 107 3 0 2 122 204 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 8 131 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - G - - - ML 108 107 3 110 3 1 6 124 206 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 109 107 3 110 3 0 2 120 202 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 7 130 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 5 122 204 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 112 110 3 113 3 0 1 119 200 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 7 129 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - G - - - ML 114 113 3 116 3 1 5 121 203 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 115 113 3 116 3 0 1 117 199 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 6 127 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 117 116 3 119 3 1 4 119 201 -2.814 -0.263 -5.372 1.568 -1.718 -1.449 -1.459 D 118 116 3 119 3 0 0 115 196 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 6 124 206 -0.415 -2.002 -14.275 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - G - - - ML 120 119 3 122 3 1 4 117 198 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 121 119 3 122 3 0 0 113 194 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 5 123 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - G - - - ML 123 122 3 125 3 1 3 115 196 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 124 122 3 125 3 0 0 112 193 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 5 122 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - C - - - ML 126 125 3 128 3 1 3 114 195 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 127 125 3 128 3 0 0 110 191 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 4 120 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - u - - - ML 129 128 3 131 3 1 3 112 193 -5.372 -0.071 -5.372 -0.020 -0.735 -0.804 0.880 D 130 128 3 131 3 0 0 109 189 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 4 119 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 132 131 3 134 3 1 2 111 192 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 133 131 3 134 3 0 0 108 188 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 4 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - G - - - ML 135 134 3 137 3 1 2 109 190 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 136 134 3 137 3 0 0 106 186 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 3 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - C - - - ML 138 137 3 140 3 1 2 108 188 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 139 137 3 140 3 0 0 105 184 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 3 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - U - - - ML 141 140 3 143 3 1 1 107 187 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 142 140 3 143 3 0 0 103 183 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 3 113 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - U - - - ML 144 143 3 146 3 1 1 105 185 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 145 143 3 146 3 0 0 102 181 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 112 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - G - - - ML 147 146 3 149 3 1 1 104 183 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 148 146 3 149 3 0 0 100 179 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 110 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - A - - - ML 150 149 3 152 3 1 1 102 182 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 151 149 3 152 3 0 0 99 178 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 2 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - A - - - ML 153 152 3 155 3 1 1 101 180 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 154 152 3 155 3 0 0 97 176 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 2 108 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - U - - - ML 156 155 3 158 3 1 1 99 178 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 157 155 3 158 3 0 0 96 174 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 106 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - G - - - ML 159 158 3 161 3 1 1 98 176 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 160 158 3 161 3 0 0 94 172 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - U - - - ML 162 161 3 164 3 1 1 96 175 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 163 161 3 164 3 0 0 93 171 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 103 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - G - - - ML 165 164 3 167 3 1 1 95 173 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 166 164 3 167 3 0 0 91 169 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - A - - - ML 168 167 3 170 3 1 1 93 171 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 169 167 3 170 3 0 0 89 167 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 100 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - G - - - ML 171 170 3 173 3 1 1 92 169 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 172 170 3 173 3 0 0 88 165 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - U - - - ML 174 173 3 176 3 1 1 90 167 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 175 173 3 176 3 0 0 86 163 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 97 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 63 - C - - - ML 177 176 3 179 3 1 1 88 166 -5.372 -0.263 -2.814 -1.513 1.497 -1.681 -0.955 D 178 176 3 179 3 0 0 84 161 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 96 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 64 - g - - - ML 180 179 3 182 3 1 1 87 164 -5.191 -0.081 -5.191 -0.577 -0.780 0.725 0.131 D 181 179 3 182 3 0 0 81 157 -12.946 -2.980 -0.196 IL 182 182 3 182 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - U - - - ML 183 182 3 185 3 1 1 86 162 -5.191 -0.081 -5.191 -1.017 -0.795 -1.127 1.305 D 184 182 3 185 3 0 0 80 155 -12.946 -2.980 -0.196 IL 185 185 3 185 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 66 - U - - - ML 186 185 3 188 3 1 1 84 160 -5.191 -0.081 -5.191 -1.017 -0.795 -1.127 1.305 D 187 185 3 188 3 0 0 78 154 -12.946 -2.980 -0.196 IL 188 188 3 188 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 67 - G - - - ML 189 188 3 191 3 1 1 82 158 -5.191 -0.081 -5.191 -1.131 -1.645 1.502 -1.353 D 190 188 3 191 3 0 0 77 152 -12.946 -2.980 -0.196 IL 191 191 3 191 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 68 - U - - - ML 192 191 3 194 3 1 1 80 156 -5.191 -0.081 -5.191 -1.017 -0.795 -1.127 1.305 D 193 191 3 194 3 0 0 76 151 -12.946 -2.980 -0.196 IL 194 194 3 194 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 69 - G - - - ML 195 194 3 197 3 1 1 79 154 -5.191 -0.081 -5.191 -1.131 -1.645 1.502 -1.353 D 196 194 3 197 3 0 0 76 151 -12.946 -0.422 -1.980 IL 197 197 3 197 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 70 - U - - - ML 198 197 3 200 3 1 1 77 152 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 199 197 3 200 3 0 0 73 147 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 71 - U - - - ML 201 200 3 203 3 1 1 75 150 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 202 200 3 203 3 0 0 71 145 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 72 - U - - - ML 204 203 3 206 3 1 1 73 147 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 205 203 3 206 3 0 0 69 143 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 73 - G - - - ML 207 206 3 209 3 1 1 71 145 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 208 206 3 209 3 0 0 67 140 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 74 - U - - - ML 210 209 3 212 3 1 1 69 143 -5.372 -0.071 -5.372 -1.305 -1.039 -1.443 1.455 D 211 209 3 212 3 0 0 65 138 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 75 - G - - - ML 213 212 3 215 3 1 1 68 141 -5.372 -0.071 -5.372 -1.415 -2.036 1.624 -1.747 D 214 212 3 215 3 0 0 63 136 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 76 - A - - - ML 216 215 3 218 3 1 1 66 138 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 217 215 3 218 3 0 0 61 133 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 74 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 77 - A - - - ML 219 218 3 221 3 1 1 63 136 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 220 218 3 221 3 0 0 59 130 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 78 - A - - - ML 222 221 3 224 3 1 1 61 133 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 223 221 3 224 3 0 0 56 127 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 79 - C - - - ML 225 224 3 227 3 1 1 59 130 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 226 224 3 227 3 0 0 53 124 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 80 - C - - - ML 228 227 3 230 3 1 1 56 127 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 229 227 3 230 3 0 0 50 120 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 1 67 138 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 81 - C - - - ML 231 230 3 233 3 1 1 53 123 -5.372 -0.071 -5.372 -1.513 1.497 -1.681 -0.955 D 232 230 3 233 3 0 0 45 114 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 1 64 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 82 - A - - - ML 234 233 3 236 3 1 1 49 118 -5.372 -0.071 -5.372 1.568 -1.718 -1.449 -1.459 D 235 233 3 236 3 0 0 32 101 -11.551 -1.585 -0.585 IL 236 236 3 236 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 83 - G - - - ML 237 236 3 239 2 1 1 1 1 * 0.000 -1.415 -2.036 1.624 -1.747 D 238 236 3 239 2 0 0 0 0 * 0.000 IL 239 239 3 239 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 80 ] - - - - - - E 240 239 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME WT1-AS_5 ACC RF02207 DESC WT1 antisense RNA conserved region 5 LENG 79 MAXL 170 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 18:35:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02207/CM NSEQ 4 EFFN 1.941406 CKSUM 1940675915 STATS LOCAL MSV -8.6980 0.71856 STATS LOCAL VITERBI -9.6349 0.71856 STATS LOCAL FORWARD -3.5093 0.71856 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47089 1.73352 1.05402 1.40616 1.38629 1.38629 1.38629 1.38629 0.03014 4.81932 3.83415 0.39730 1.11515 0.00000 * 1 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 2 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 3 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 4 0.84202 1.41718 1.91846 1.71518 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 5 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 6 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 7 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 8 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 9 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 10 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 11 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 12 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 13 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 14 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 15 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 16 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 17 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 18 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 19 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 20 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 21 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 22 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 23 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 24 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 25 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 26 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 27 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 28 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 29 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 30 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 31 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 32 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 33 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 34 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 35 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 36 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 37 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 38 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 39 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.18200 1.95018 3.72362 1.38730 0.28735 1.09861 0.40547 40 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 41 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 42 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 43 1.40014 1.89606 1.94358 0.77634 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 44 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 45 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 46 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 47 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 48 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 49 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 50 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 51 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 52 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 53 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 54 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 55 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 56 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 57 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 58 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 59 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.18200 3.72362 1.95018 1.46634 0.26236 1.09861 0.40547 60 1.78649 1.92695 0.88392 1.29572 - g - - : 1.38629 1.38629 1.38629 1.38629 0.05632 3.59794 3.59794 1.46634 0.26236 2.06573 0.13551 61 2.09088 1.93767 2.16728 0.48144 - U - - : 1.38629 1.38629 1.38629 1.38629 0.05632 3.59794 3.59794 1.46634 0.26236 2.06573 0.13551 62 2.09088 1.93767 2.16728 0.48144 - U - - : 1.38629 1.38629 1.38629 1.38629 0.05632 3.59794 3.59794 1.46634 0.26236 2.06573 0.13551 63 2.17057 2.52654 0.34523 2.32385 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05632 3.59794 3.59794 1.46634 0.26236 2.06573 0.13551 64 2.09088 1.93767 2.16728 0.48144 - U - - : 1.38629 1.38629 1.38629 1.38629 0.05632 3.59794 3.59794 1.46634 0.26236 2.06573 0.13551 65 2.17057 2.52654 0.34523 2.32385 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05632 3.59794 3.59794 1.46634 0.26236 0.29229 1.37259 66 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 67 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 68 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 69 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 70 2.29081 2.10635 2.38628 0.37810 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 71 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 72 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 73 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 74 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 75 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 76 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 77 2.43478 0.34883 2.55175 2.04852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 78 0.29909 2.57722 2.39070 2.39734 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04950 3.72362 3.72362 1.46634 0.26236 1.09861 0.40547 79 2.36692 2.79751 0.26035 2.59710 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //