# STOCKHOLM 1.0
#=GF ID WT1-AS_4
#=GF AC RF02206
#=GF DE WT1 antisense RNA conserved region 4
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 60.0
#=GF NC 56.4
#=GF TC 62.4
#=GF SE Predicted; MAFFT
#=GF SS Predicted; RNAalifold
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.67 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 2173145
#=GF RT Tissue, developmental, and tumor-specific expression of divergent
#=GF RT transcripts in Wilms tumor.
#=GF RA Huang A, Campbell CE, Bonetta L, McAndrews-Hill MS, Chilton-MacNeill S,
#=GF RA Coppes MJ, Law DJ, Feinberg AP, Yeger H, Williams BR
#=GF RL Science. 1990;250:991-994.
#=GF RN [2]
#=GF RM 8406502
#=GF RT Sequence of the WT1 upstream region including the Wit-1 gene.
#=GF RA Gessler M, Bruns GA
#=GF RL Genomics. 1993;17:499-501.
#=GF RN [3]
#=GF RM 17210670
#=GF RT A CTCF-binding silencer regulates the imprinted genes AWT1 and WT1-AS and
#=GF RT exhibits sequential epigenetic defects during Wilms' tumourigenesis.
#=GF RA Hancock AL, Brown KW, Moorwood K, Moon H, Holmgren C, Mardikar SH,
#=GF RA Dallosso AR, Klenova E, Loukinov D, Ohlsson R, Lobanenkov VV, Malik K
#=GF RL Hum Mol Genet. 2007;16:343-354.
#=GF WK WT1-AS
#=GF SQ 12

DQ289488.1/1032-1159      -----CUUGCAUUGCAUAAACG-UUGUCGCCAUUAAAUUCUGGCUG-CGGACCCGAAGUGUGUGCGGGCCCAGGACUUACUCGAAGG-GCGCA-------CUUCUUGGGAAUGCGCAU-CCCGUAGGCGCAGGAGACCCUGAGG
U06486.1/255-127          -----CUUGCAUUGCAUAAACGAUUGUCGCCAUUAAAUUCUGGCUG-CGGACCCGAAGUGUGUGCGGGCCCAGGACUUACUCGAAGG-GCGCA-------CUUCUUGGGAAUGCGCAU-CCCGUAGGCGCAGGAGACCCUGAGG
X77549.1/881-754          -----CUUGCAUUGCAUAAACG-UUGUCGCCAUUAAAUUCUGGCUG-CGGACCCGAAGUGUGUGCGGGCCCAGGACUUACUCGAAGG-GCGCA-------CUUCUUGGGAAUGCGCAU-CCCGUAGGCGCAGGAGACCCUGAGG
AY245105.1/357-230        -----CUUGCAUUGCAUAAACG-UUGUCGCCAUUAAAUUCUGGCUG-CGGACCCGAAGUGUGUGCGGGCCCAGGACUUACUCGAAGG-GCGCA-------CUUCUUGGGAAUGCGCAU-CCCGUAGGCGCAGGAGACCCUGAGG
AANU01216576.1/705-578    -----CUUGCAUUGCGUAAACG-UUCUCGCUAUUAAAUUCUGGCUG-CGGACCCGAAGUGUGUGCGGGUCCAGGACUUAGUCGAAGG-GCGCA-------CUUCUUGGGGAUGCGCAU-CUCGUAGGCGCAGGAGACCCUGAGG
AAQQ01112620.1/2365-2232  -----CUUGCAUGGUGUAAACA-CAACCGCUG-UAAAUUCUGGCUGAAGGAUCCGAAGUAUGUGCAGGUUCAGGAAGUCCCGUGU---GCGCGAUCCUCUUCCUCUUGGGCUGCGCAUCCCCUUAGGCACAAGAGACCUUGAGG
ABRN01427349.1/2234-2103  -----UUUCCACUACGUAAA---CGGUAGCCA-GGAGUUCUCGCUG-CGGACCAGAAGCGUGUGCCAGCUCAAGACCUACACGCUAA-GUGCAUUUCCCUCCUCUUGGGGUCGCUUGU-CUUGGAGGCGCAGGAAACCGUGAGG
ABDC01041565.1/1900-2033  -----CGUGUA-AAAAAAAAUG-CCGUCGCUG-UAAAUUCCGGUUU-CGGUCCCAAAGCGUUUGGGGGCUCGGGGCGUACCCGCGGGCUUGCAGUUCCCUCCUCUUUGGGUUGCGCAU-CCAGUGGGCGCAGCAGACCCUGAGG
AAGV020131545.1/2080-1948 -----UUUGCACUGAGUAAACC-CAGUCGCCG-UCAG-CCCAGCUG-CCGACCCCAAGCGUGUGCGGGCUCAGGACCUACACAAUGC-AAGCAAUUCUCUCCUUUCGGGAUCUCGCGG-CGGCGAGGUGCAGGAGACCCAGACC
AAFC03041825.1/2661-2535  AUUAAUUCGCACUAAGUAAA-------AGCCA-GGAGUUCUGGGUG-CGGACCCGCAGCGUGUGUG------GCACCUACACGCUAA-GUACAGGUCCUUCCUCUGGAGGUCGCUUGU-CCUGGAGGCGCAGGAAACCUUGAGG
AAGU03043695.1/2212-2078  -----AUUUCCACAAGCAAACG-CAGUCGCGG-UGAGUUCGGGCUG-ACGACCUGAAGCGUGUGCUGGUUUAGGAAACACAAGCUGGCACGCGAUUCCCCCCUUUUGGGGCAGUGGGU-CCAGGAGGCGCAGGAGACCCUGAGA
AAQR03002375.1/1927-2057  -----CUUUUGUU---UGAACU-UGCUUGCCUGUAAAUUCCGACUG-AGGUCCUAAAGCAUUUGCGGGCUCAACACCUACUUGCCAC-ACGCAACUUCCUCCU-UUGCGGCUCCUGGU-CCAGUAGGCACAGAAGACCCCGGGG
#=GC SS_cons              .....:::::::::::::::::.:::::::::.:::::::::::::.::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
#=GC RF                   .....cUUgCauugaGUAAACg.cugUcGCcg.UaAaUUCuGGCUG.cGGaCCcgAAGcGUGUGCgGGcuCAGGACuUACucGcuGg.gcGCAauUCcCUCCUcUUGGGGuuGCgcgU.CccGuAGGCGCAGGAGACCcUGAGG
//
